Guide to the Human Genome
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Name: LOC100291383 Sequence: fasta or formatted (114aa) NCBI GI: 239749044
Description:

PREDICTED: hypothetical protein XP_002346891

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.7         19           5
 C cysteine            3.5          4           2
 D aspartate           3.5          4           1
 E glutamate           7.9          9           2
 F phenylalanine       0.9          1           1
 G glycine             7.0          8           2
 H histidine           0.0          0           0
 I isoleucine          2.6          3           1
 K lysine              2.6          3           1
 L leucine             5.3          6           1
 M methionine          3.5          4           1
 N asparagine          3.5          4           1
 P proline            14.9         17           2
 Q glutamine           0.0          0           0
 R arginine           10.5         12           1
 S serine              8.8         10           2
 T threonine           6.1          7           1
 V valine              1.8          2           1
 W tryptophan          0.9          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346891 
LOC100288658          0.735   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.735   PREDICTED: hypothetical protein 
LOC100293776          0.720   PREDICTED: hypothetical protein 
FOXK1                 0.066   forkhead box K1 
MAP3K1                0.057   mitogen-activated protein kinase kinase kinase 1 [H...
LTBP2                 0.052   latent transforming growth factor beta binding protei...
LOC147670             0.052   PREDICTED: hypothetical protein LOC147670 
LOC147670             0.052   PREDICTED: hypothetical protein LOC147670 
LOC147670             0.052   PREDICTED: hypothetical protein LOC147670 
IRX1                  0.052   iroquois homeobox protein 1 
BAG3                  0.047   BCL2-associated athanogene 3 
GGN                   0.047   gametogenetin 
GNAS                  0.047   GNAS complex locus XLas 
TAF4                  0.047   TBP-associated factor 4 
ZFR2                  0.047   zinc finger RNA binding protein 2 isoform 1 
SAMD1                 0.047   sterile alpha motif domain containing 1 
MAGI2                 0.043   membrane associated guanylate kinase, WW and PDZ dom...
CABP1                 0.043   calcium binding protein 1 isoform 3 
CHD3                  0.043   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.043   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.043   chromodomain helicase DNA binding protein 3 isoform...
CCDC9                 0.043   coiled-coil domain containing 9 
SPRED3                0.043   sprouty-related, EVH1 domain containing 3 isoform a...
DMWD                  0.043   dystrophia myotonica-containing WD repeat motif prot...
MAZ                   0.043   MYC-associated zinc finger protein isoform 2 
MAZ                   0.043   MYC-associated zinc finger protein isoform 1 
SALL3                 0.043   sal-like 3 
VSIG1                 0.043   V-set and immunoglobulin domain containing 1 
BTBD6                 0.038   BTB domain protein BDPL 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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