Guide to the Human Genome
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Name: IRX1 Sequence: fasta or formatted (480aa) NCBI GI: 51479177
Description:

iroquois homeobox protein 1

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.7         80          10
 C cysteine            0.2          1           1
 D aspartate           5.4         26           2
 E glutamate           4.8         23           2
 F phenylalanine       2.5         12           1
 G glycine            10.0         48           3
 H histidine           2.9         14           1
 I isoleucine          2.3         11           2
 K lysine              4.6         22           2
 L leucine             8.3         40           2
 M methionine          1.2          6           1
 N asparagine          2.7         13           1
 P proline            12.5         60           4
 Q glutamine           4.0         19           2
 R arginine            3.5         17           3
 S serine              7.7         37           2
 T threonine           4.2         20           1
 V valine              2.5         12           1
 W tryptophan          1.0          5           1
 Y tyrosine            2.9         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   iroquois homeobox protein 1 
IRX3                  0.314   iroquois homeobox 3 
IRX2                  0.188   iroquois homeobox 2 
IRX2                  0.188   iroquois homeobox 2 
IRX4                  0.181   iroquois homeobox 4 
IRX6                  0.179   iroquois homeobox protein 6 
IRX5                  0.172   iroquois homeobox protein 5 
MKX                   0.055   mohawk homeobox 
MNX1                  0.035   homeo box HB9 
DMBX1                 0.035   diencephalon/mesencephalon homeobox 1 isoform a [Hom...
PKNOX1                0.034   PBX/knotted 1 homeobox 1 
DMBX1                 0.034   diencephalon/mesencephalon homeobox 1 isoform b [Hom...
TGIF1                 0.033   TG-interacting factor isoform a 
TGIF1                 0.033   TG-interacting factor isoform c 
TGIF1                 0.033   TG-interacting factor isoform d 
TGIF1                 0.033   TG-interacting factor isoform d 
TGIF1                 0.033   TG-interacting factor isoform d 
TGIF1                 0.033   TG-interacting factor isoform d 
TGIF1                 0.033   TG-interacting factor isoform c 
TGIF1                 0.033   TG-interacting factor isoform b 
PKNOX2                0.033   PBX/knotted 1 homeobox 2 
TGIF2LX               0.033   TGFB-induced factor homeobox 2-like, X-linked 
UNCX                  0.032   UNC homeobox 
MEIS3                 0.031   Meis1, myeloid ecotropic viral integration site 1 ho...
TGIF2                 0.031   TGFB-induced factor homeobox 2 
NACA                  0.030   nascent polypeptide-associated complex alpha subuni...
SIX5                  0.030   sine oculis homeobox homolog 5 
HOXB7                 0.030   homeobox B7 
MEIS2                 0.029   Meis homeobox 2 isoform h 
MEIS2                 0.029   Meis homeobox 2 isoform g 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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