Guide to the Human Genome
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Name: LOC100291038 Sequence: fasta or formatted (191aa) NCBI GI: 239747332
Description:

PREDICTED: hypothetical protein XP_002346425

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          8           1
 C cysteine            3.7          7           2
 D aspartate           4.7          9           2
 E glutamate           1.6          3           1
 F phenylalanine       7.9         15           1
 G glycine             3.1          6           1
 H histidine           4.7          9           2
 I isoleucine          5.2         10           2
 K lysine              4.2          8           2
 L leucine            13.1         25           2
 M methionine          3.1          6           1
 N asparagine          3.1          6           1
 P proline             4.2          8           1
 Q glutamine           4.2          8           2
 R arginine            2.6          5           1
 S serine             12.0         23           2
 T threonine           3.7          7           2
 V valine              6.8         13           2
 W tryptophan          5.8         11           1
 Y tyrosine            2.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346425 
LOC100287946          1.000   PREDICTED: hypothetical protein XP_002342123 
LOC100292475          0.995   PREDICTED: similar to ATPase, H+ transporting, lyso...
ATP6V0E1              0.288   ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e...
ATP6V0E2              0.199   ATPase, H+ transporting, V0 subunit isoform 1 [Homo...
ATP6V0E2              0.083   ATPase, H+ transporting, V0 subunit isoform 2 [Homo...
GYLTL1B               0.018   glycosyltransferase-like 1B 
LOC100293348          0.018   PREDICTED: hypothetical protein 
LOC100287685          0.018   PREDICTED: hypothetical protein XP_002342053 
LARGE                 0.013   like-glycosyltransferase 
LARGE                 0.013   like-glycosyltransferase 
LHCGR                 0.013   luteinizing hormone/choriogonadotropin receptor pre...
OR6X1                 0.010   olfactory receptor, family 6, subfamily X, member 1 ...
WFS1                  0.008   wolframin 
WFS1                  0.008   wolframin 
HSD17B13              0.008   hydroxysteroid (17-beta) dehydrogenase 13 isoform B...
HSD17B13              0.008   hydroxysteroid (17-beta) dehydrogenase 13 isoform A...
CSF2RB                0.008   colony stimulating factor 2 receptor, beta precursor ...
LOC100294038          0.008   PREDICTED: similar to centaurin, gamma-like family,...
SLC17A3               0.008   solute carrier family 17 (sodium phosphate), member...
SLC17A3               0.008   solute carrier family 17 (sodium phosphate), member...
OR51D1                0.008   olfactory receptor, family 51, subfamily D, member 1...
HSD17B2               0.005   hydroxysteroid (17-beta) dehydrogenase 2 
SSRP1                 0.005   structure specific recognition protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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