Guide to the Human Genome
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Name: LOC100287685 Sequence: fasta or formatted (131aa) NCBI GI: 239741010
Description:

PREDICTED: hypothetical protein XP_002342053

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3          7           1
 C cysteine            3.8          5           1
 D aspartate           1.5          2           1
 E glutamate           1.5          2           1
 F phenylalanine       6.9          9           1
 G glycine             6.9          9           2
 H histidine           3.8          5           1
 I isoleucine          3.8          5           1
 K lysine              5.3          7           1
 L leucine            13.7         18           2
 M methionine          3.1          4           1
 N asparagine          1.5          2           1
 P proline             5.3          7           1
 Q glutamine           6.1          8           2
 R arginine           10.7         14           1
 S serine              6.1          8           2
 T threonine           4.6          6           1
 V valine              6.9          9           2
 W tryptophan          2.3          3           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342053 
LOC100293348          1.000   PREDICTED: hypothetical protein 
LOC100292475          0.028   PREDICTED: similar to ATPase, H+ transporting, lyso...
LOC100291038          0.028   PREDICTED: hypothetical protein XP_002346425 
LOC100287946          0.028   PREDICTED: hypothetical protein XP_002342123 
SHC4                  0.016   rai-like protein 
L3MBTL                0.012   l(3)mbt-like isoform I 
L3MBTL                0.012   l(3)mbt-like isoform II 
SLC12A9               0.008   solute carrier family 12 (potassium/chloride transpo...
SPATA20               0.004   spermatogenesis associated 20 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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