SOBP 2052

Name: SOBP	Sequence: fasta or formatted (873aa)		NCBI GI: 117938310
Description: sine oculis binding protein homolog		Not currently referenced in the text
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.2 72 4 C cysteine 2.5 22 1 D aspartate 3.8 33 2 E glutamate 5.8 51 2 F phenylalanine 2.1 18 1 G glycine 8.2 72 2 H histidine 2.7 24 2 I isoleucine 4.4 38 2 K lysine 5.3 46 2 L leucine 6.9 60 2 M methionine 2.9 25 2 N asparagine 4.8 42 2 P proline 16.6 145 7 Q glutamine 2.9 25 2 R arginine 4.6 40 2 S serine 8.2 72 2 T threonine 3.3 29 2 V valine 4.8 42 2 W tryptophan 0.5 4 1 Y tyrosine 1.5 13 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 sine oculis binding protein homolog RAI2 0.057 retinoic acid induced 2 FLJ22184 0.042 PREDICTED: hypothetical protein FLJ22184 FLJ22184 0.042 PREDICTED: hypothetical protein LOC80164 FLJ22184 0.037 PREDICTED: hypothetical protein FLJ22184 MUC2 0.034 mucin 2 precursor FMN2 0.033 formin 2 MLL2 0.032 myeloid/lymphoid or mixed-lineage leukemia 2 RERE 0.032 atrophin-1 like protein isoform b RERE 0.032 atrophin-1 like protein isoform a RERE 0.032 atrophin-1 like protein isoform a NACA 0.032 nascent polypeptide-associated complex alpha subuni... SRCAP 0.032 Snf2-related CBP activator protein TPRX1 0.031 tetra-peptide repeat homeobox CCNK 0.030 cyclin K isoform 1 CPSF6 0.030 cleavage and polyadenylation specific factor 6, 68 ... BCORL1 0.030 BCL6 co-repressor-like 1 COL17A1 0.029 alpha 1 type XVII collagen GLTSCR1 0.029 glioma tumor suppressor candidate region gene 1 [Ho... PYGO2 0.029 pygopus homolog 2 COL3A1 0.028 collagen type III alpha 1 preproprotein PTPN23 0.028 protein tyrosine phosphatase, non-receptor type 23 [... MBD6 0.028 methyl-CpG binding domain protein 6 ZIC5 0.027 zinc finger protein of the cerebellum 5 WASL 0.027 Wiskott-Aldrich syndrome gene-like protein RAPH1 0.027 Ras association and pleckstrin homology domains 1 is... YLPM1 0.027 YLP motif containing 1 LOC100128719 0.027 PREDICTED: hypothetical protein, partial LOC100128719 0.027 PREDICTED: hypothetical protein, partial PRB2 0.027 proline-rich protein BstNI subfamily 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.