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Search of human proteins with 239745703
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens]
(220 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226442736 ring finger protein 222 [Homo sapiens] 444 e-125
gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens] 444 e-125
gi|239756718 PREDICTED: ring finger protein 222 [Homo sapiens] 441 e-124
gi|239751213 PREDICTED: ring finger protein 222 [Homo sapiens] 441 e-124
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap... 50 2e-06
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap... 50 2e-06
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap... 50 2e-06
gi|153252110 ring finger protein 183 [Homo sapiens] 49 3e-06
gi|239752655 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|239747208 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|239740999 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|153791514 tripartite motif-containing 32 [Homo sapiens] 46 2e-05
gi|153792582 tripartite motif-containing 32 [Homo sapiens] 46 2e-05
gi|30023818 tripartite motif protein 50A [Homo sapiens] 45 6e-05
gi|153791360 ret finger protein-like 4B [Homo sapiens] 45 6e-05
gi|22749455 ring finger protein 182 [Homo sapiens] 44 8e-05
gi|38524612 tripartite motif-containing 74 [Homo sapiens] 44 1e-04
gi|65285121 tripartite motif-containing 73 [Homo sapiens] 44 1e-04
gi|56605981 tripartite motif-containing 72 [Homo sapiens] 43 2e-04
gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Ho... 43 2e-04
gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Hom... 43 2e-04
gi|221139764 PHD and ring finger domains 1 [Homo sapiens] 42 3e-04
gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens] 42 3e-04
gi|222446607 SH3 domain containing ring finger 2 [Homo sapiens] 42 5e-04
gi|47717106 zinc finger, FYVE domain containing 9 isoform 3 [Hom... 42 5e-04
gi|27436877 tripartite motif-containing 59 [Homo sapiens] 42 5e-04
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens] 41 7e-04
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens] 41 7e-04
gi|94536782 tripartite motif-containing 35 isoform 2 [Homo sapiens] 41 7e-04
gi|223890259 midline 2 isoform 2 [Homo sapiens] 40 0.001
>gi|226442736 ring finger protein 222 [Homo sapiens]
Length = 220
Score = 444 bits (1141), Expect = e-125
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV
Sbjct: 1 MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
Query: 61 CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPPP 120
CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPPP
Sbjct: 61 CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPPP 120
Query: 121 GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA 180
GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA
Sbjct: 121 GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA 180
Query: 181 PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA 220
PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA
Sbjct: 181 PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA 220
>gi|239745703 PREDICTED: ring finger protein 222 [Homo sapiens]
Length = 220
Score = 444 bits (1141), Expect = e-125
Identities = 220/220 (100%), Positives = 220/220 (100%)
Query: 1 MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV
Sbjct: 1 MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
Query: 61 CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPPP 120
CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPPP
Sbjct: 61 CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPPP 120
Query: 121 GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA 180
GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA
Sbjct: 121 GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA 180
Query: 181 PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA 220
PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA
Sbjct: 181 PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA 220
>gi|239756718 PREDICTED: ring finger protein 222 [Homo sapiens]
Length = 220
Score = 441 bits (1133), Expect = e-124
Identities = 219/220 (99%), Positives = 219/220 (99%)
Query: 1 MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV
Sbjct: 1 MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
Query: 61 CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPPP 120
CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASS AWRPPP
Sbjct: 61 CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSSAWRPPP 120
Query: 121 GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA 180
GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA
Sbjct: 121 GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA 180
Query: 181 PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA 220
PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA
Sbjct: 181 PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA 220
>gi|239751213 PREDICTED: ring finger protein 222 [Homo sapiens]
Length = 220
Score = 441 bits (1133), Expect = e-124
Identities = 219/220 (99%), Positives = 219/220 (99%)
Query: 1 MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV
Sbjct: 1 MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
Query: 61 CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPPP 120
CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASS AWRPPP
Sbjct: 61 CPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSSAWRPPP 120
Query: 121 GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA 180
GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA
Sbjct: 121 GQARPPGSPGQSAQLPLDLLPSLPRESQIFVISRHGMPLGEQDSVLPRRSLAELSEASLA 180
Query: 181 PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA 220
PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA
Sbjct: 181 PRSARAFCCRSRALLLITLIAVVAVVAAILPWVLLVRKQA 220
>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 49.7 bits (117), Expect = 2e-06
Identities = 47/178 (26%), Positives = 64/178 (35%), Gaps = 54/178 (30%)
Query: 3 EGESKDSSGS--------ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQ 54
EG+ SG EC +C F + + L CGHVFC +CL + L+T G
Sbjct: 45 EGDGSPGSGPILPPASPVECLICVSSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGG- 103
Query: 55 VQRTLVCPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSP 114
+ CP+CR T L+ + GLP++P L P A +P
Sbjct: 104 --NAVACPVCRAPTRLAPRR------------------GLPALPTQSGL---LPRDARAP 140
Query: 115 AWR-------------------PPPGQAR---PPGSPGQSAQLPLDLLPSLPRESQIF 150
R PPPG + PP P PL SL + +F
Sbjct: 141 PSRQGSVRFDRRRGLLYLRPPPPPPGPRKARAPPPPPPLRLGRPLSRRLSLASPAWVF 198
>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 49.7 bits (117), Expect = 2e-06
Identities = 47/178 (26%), Positives = 64/178 (35%), Gaps = 54/178 (30%)
Query: 3 EGESKDSSGS--------ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQ 54
EG+ SG EC +C F + + L CGHVFC +CL + L+T G
Sbjct: 45 EGDGSPGSGPILPPASPVECLICVSSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGG- 103
Query: 55 VQRTLVCPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSP 114
+ CP+CR T L+ + GLP++P L P A +P
Sbjct: 104 --NAVACPVCRAPTRLAPRR------------------GLPALPTQSGL---LPRDARAP 140
Query: 115 AWR-------------------PPPGQAR---PPGSPGQSAQLPLDLLPSLPRESQIF 150
R PPPG + PP P PL SL + +F
Sbjct: 141 PSRQGSVRFDRRRGLLYLRPPPPPPGPRKARAPPPPPPLRLGRPLSRRLSLASPAWVF 198
>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 49.7 bits (117), Expect = 2e-06
Identities = 47/178 (26%), Positives = 64/178 (35%), Gaps = 54/178 (30%)
Query: 3 EGESKDSSGS--------ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQ 54
EG+ SG EC +C F + + L CGHVFC +CL + L+T G
Sbjct: 45 EGDGSPGSGPILPPASPVECLICVSSFDGVFKLPKRLDCGHVFCLECLARLSLATAGGG- 103
Query: 55 VQRTLVCPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSP 114
+ CP+CR T L+ + GLP++P L P A +P
Sbjct: 104 --NAVACPVCRAPTRLAPRR------------------GLPALPTQSGL---LPRDARAP 140
Query: 115 AWR-------------------PPPGQAR---PPGSPGQSAQLPLDLLPSLPRESQIF 150
R PPPG + PP P PL SL + +F
Sbjct: 141 PSRQGSVRFDRRRGLLYLRPPPPPPGPRKARAPPPPPPLRLGRPLSRRLSLASPAWVF 198
>gi|153252110 ring finger protein 183 [Homo sapiens]
Length = 192
Score = 49.3 bits (116), Expect = 3e-06
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 1 MSEGESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
M+E + ++ +ECPVC+ F + + L C H FC +CL L T +R L+
Sbjct: 1 MAEQQGRELE-AECPVCWNPFNNTFHTPKMLDCCHSFCVECLAHLSLVT----PARRRLL 55
Query: 61 CPICRYVTFLS 71
CP+CR T L+
Sbjct: 56 CPLCRQPTVLA 66
>gi|239752655 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 46.2 bits (108), Expect = 2e-05
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 4 GESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPI 63
G + +S EC +C+ + ++ + LSC HVFC +CL + + V + CP
Sbjct: 41 GSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPF 100
Query: 64 CRYVT 68
CR T
Sbjct: 101 CRQPT 105
>gi|239747208 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 46.2 bits (108), Expect = 2e-05
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 4 GESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPI 63
G + +S EC +C+ + ++ + LSC HVFC +CL + + V + CP
Sbjct: 41 GSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPF 100
Query: 64 CRYVT 68
CR T
Sbjct: 101 CRQPT 105
>gi|239740999 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 46.2 bits (108), Expect = 2e-05
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 4 GESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPI 63
G + +S EC +C+ + ++ + LSC HVFC +CL + + V + CP
Sbjct: 41 GSERVASPLECSICFSGYDNIFKTPKELSCTHVFCLECLARLAAAQPVGRPGGEAVPCPF 100
Query: 64 CRYVT 68
CR T
Sbjct: 101 CRQPT 105
>gi|153791514 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 46.2 bits (108), Expect = 2e-05
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 13 ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVT 68
ECP+C E F + + + L CGH C CL K LL++ ++G + CP C +T
Sbjct: 19 ECPICMESFTEEQLRPKLLHCGHTICRQCLEK-LLASSING-----VRCPFCSKIT 68
>gi|153792582 tripartite motif-containing 32 [Homo sapiens]
Length = 653
Score = 46.2 bits (108), Expect = 2e-05
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 13 ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVT 68
ECP+C E F + + + L CGH C CL K LL++ ++G + CP C +T
Sbjct: 19 ECPICMESFTEEQLRPKLLHCGHTICRQCLEK-LLASSING-----VRCPFCSKIT 68
>gi|30023818 tripartite motif protein 50A [Homo sapiens]
Length = 487
Score = 44.7 bits (104), Expect = 6e-05
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 17/99 (17%)
Query: 13 ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVTFLSK 72
+CP+C E F++ L CGH +C CLV LS +D +++ CP+CR
Sbjct: 15 QCPICLEVFKE----PLMLQCGHSYCKGCLVS--LSCHLDAELR----CPVCRQAV---D 61
Query: 73 KSSRWPSM-LDKSSQTLAVPVGLPSVPPLDSLGHTNPLA 110
SS P++ L + + L +P G P P + H NPL+
Sbjct: 62 GSSSLPNVSLARVIEALRLP-GDPE--PKVCVHHRNPLS 97
>gi|153791360 ret finger protein-like 4B [Homo sapiens]
Length = 263
Score = 44.7 bits (104), Expect = 6e-05
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 14 CPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYV 67
CPVC + F S +LSC HVFC DC+ +Y+L +CP+CR V
Sbjct: 11 CPVCLDFF----SCSISLSCTHVFCFDCIQRYILENH-----DFRAMCPLCRDV 55
>gi|22749455 ring finger protein 182 [Homo sapiens]
Length = 247
Score = 44.3 bits (103), Expect = 8e-05
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 5 ESKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPIC 64
ES+ S EC +CY ++ + + L C H C CL K + Q +VCP C
Sbjct: 11 ESQASDELECKICYNRYNLKQRKPKVLECCHRVCAKCLYKII---DFGDSPQGVIVCPFC 67
Query: 65 RYVTFL 70
R+ T L
Sbjct: 68 RFETCL 73
>gi|38524612 tripartite motif-containing 74 [Homo sapiens]
Length = 250
Score = 43.5 bits (101), Expect = 1e-04
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 17/99 (17%)
Query: 13 ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVTFLSK 72
+CP+C E F++ S L CGH +C CLV LS +D +V+ CP+C V
Sbjct: 15 QCPICLEVFKE----SLMLQCGHSYCKGCLVS--LSYHLDTKVR----CPMCWQVV---D 61
Query: 73 KSSRWPSMLDKSSQTLAVPVGLPSVP-PLDSLGHTNPLA 110
SS P++ S + + LP P P + H NPL+
Sbjct: 62 GSSSLPNV---SLAWVIEALRLPGDPEPKVCVHHRNPLS 97
>gi|65285121 tripartite motif-containing 73 [Homo sapiens]
Length = 250
Score = 43.5 bits (101), Expect = 1e-04
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 17/99 (17%)
Query: 13 ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVTFLSK 72
+CP+C E F++ S L CGH +C CLV LS +D +V+ CP+C V
Sbjct: 15 QCPICLEVFKE----SLMLQCGHSYCKGCLVS--LSYHLDTKVR----CPMCWQVV---D 61
Query: 73 KSSRWPSMLDKSSQTLAVPVGLPSVP-PLDSLGHTNPLA 110
SS P++ S + + LP P P + H NPL+
Sbjct: 62 GSSSLPNV---SLAWVIEALRLPGDPEPKVCVHHRNPLS 97
>gi|56605981 tripartite motif-containing 72 [Homo sapiens]
Length = 477
Score = 43.1 bits (100), Expect = 2e-04
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 14 CPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVTFLSKK 73
CP+C + F A T CGH FC CL + DG T++CP C+ T
Sbjct: 14 CPLCLQLF----DAPVTAECGHSFCRACLGRVAGEPAADG----TVLCPCCQAPT----- 60
Query: 74 SSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLA 110
P L + Q + GL VP H +PL+
Sbjct: 61 ---RPQALSTNLQLARLVEGLAQVPQGHCEEHLDPLS 94
>gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Homo
sapiens]
Length = 1687
Score = 42.7 bits (99), Expect = 2e-04
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 1 MSEGESKDSSG---SECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQR 57
+ + + K S G CP+C R L L+CGH FC++C + ++ G +
Sbjct: 1420 LEKSQDKTSGGVNPEPCPICA---RQLGKQWAVLTCGHCFCNEC-ISIIIEQYSVGSHRS 1475
Query: 58 TLVCPICRYVTFLSKKSSRWPSMLDKSSQTLAVPV 92
++ C ICR T S K + +K++Q +PV
Sbjct: 1476 SIKCAICRQTT--SHKEISYVFTSEKANQEEDIPV 1508
>gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Homo
sapiens]
Length = 1659
Score = 42.7 bits (99), Expect = 2e-04
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 1 MSEGESKDSSG---SECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQR 57
+ + + K S G CP+C R L L+CGH FC++C + ++ G +
Sbjct: 1420 LEKSQDKTSGGVNPEPCPICA---RQLGKQWAVLTCGHCFCNEC-ISIIIEQYSVGSHRS 1475
Query: 58 TLVCPICRYVTFLSKKSSRWPSMLDKSSQTLAVPV 92
++ C ICR T S K + +K++Q +PV
Sbjct: 1476 SIKCAICRQTT--SHKEISYVFTSEKANQEEDIPV 1508
>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
Length = 1648
Score = 42.4 bits (98), Expect = 3e-04
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 6 SKDSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICR 65
+ D CP+C FRD + +C H FC DC+V++ + V RTL IC
Sbjct: 100 NSDDDAESCPICLNAFRD-QAVGTPENCAHYFCLDCIVEWSKNAN-SCPVDRTLFKCICI 157
Query: 66 YVTFLSKKSSRWPSMLDKSSQ 86
F K + P K+S+
Sbjct: 158 RAQFGGKILRKIPVENTKASE 178
>gi|150010572 SH3 domain containing ring finger 3 [Homo sapiens]
Length = 882
Score = 42.4 bits (98), Expect = 3e-04
Identities = 41/134 (30%), Positives = 52/134 (38%), Gaps = 35/134 (26%)
Query: 4 GESKDSSGS----ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTL 59
GE D S EC VC E+ L+ ++ L C H FC CL + S + L
Sbjct: 43 GEDMDESSLLDLLECSVCLER---LDTTAKVLPCQHTFCRRCLESIVCS-------RHEL 92
Query: 60 VCPICRYVTFLSKKSSRWPSMLDKSSQTLAVPVGLPSVPPLDSLGHTNPLAASSPAWRPP 119
CP CR + +P + V LD + P A +SP PP
Sbjct: 93 RCPECRILVGCGVDE---------------LPANILLVRLLDGI-RQRPRAGTSPGGSPP 136
Query: 120 PGQARPPGSPGQSA 133
ARP PGQSA
Sbjct: 137 ---ARP--IPGQSA 145
>gi|222446607 SH3 domain containing ring finger 2 [Homo sapiens]
Length = 729
Score = 41.6 bits (96), Expect = 5e-04
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 13 ECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVTF 69
ECPVC+EK L+ ++ L C H FC CL + + + L CP CR F
Sbjct: 11 ECPVCFEK---LDVTAKVLPCQHTFCKPCLQRVF-------KAHKELRCPECRTPVF 57
>gi|47717106 zinc finger, FYVE domain containing 9 isoform 3 [Homo
sapiens]
Length = 1425
Score = 41.6 bits (96), Expect = 5e-04
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 8/124 (6%)
Query: 8 DSSGSECPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYV 67
DS C C +F + +CG VFC C +D + R VC IC V
Sbjct: 699 DSQAPNCMKCEARFTFTKRRHHCRACGKVFCASCCSLKCKLLYMDRKEAR--VCVICHSV 756
Query: 68 TFLSKKSSRWPSMLDKSSQTLAV--PVGLPS-VPPLDSLGHTNPLAASSPAWRPPPGQAR 124
+ W +M+ SSQ+ P S +PPL + L++ P P G +
Sbjct: 757 LM---NAQAWENMMSASSQSPNPNNPAEYCSTIPPLQQAQASGALSSPPPTVMVPVGVLK 813
Query: 125 PPGS 128
PG+
Sbjct: 814 HPGA 817
>gi|27436877 tripartite motif-containing 59 [Homo sapiens]
Length = 403
Score = 41.6 bits (96), Expect = 5e-04
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 14 CPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLST---RVDGQVQRTLVCPICRYVT 68
CP+CY F D R L C H FC +CL L ++ + ++ L CP CR +T
Sbjct: 10 CPICYSIFED----PRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCRSIT 63
>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo
sapiens]
Length = 744
Score = 41.2 bits (95), Expect = 7e-04
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 14 CPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVTFLSKK 73
C +C E++++ + L C H FC CL Y+ + + TL CP+CR + L +K
Sbjct: 23 CSICLERYKN----PKVLPCLHTFCERCLQNYIPAHSL------TLSCPVCRQTSILPEK 72
>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo
sapiens]
Length = 771
Score = 41.2 bits (95), Expect = 7e-04
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 14 CPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICRYVTFLSKK 73
C +C E++++ + L C H FC CL Y+ + + TL CP+CR + L +K
Sbjct: 50 CSICLERYKN----PKVLPCLHTFCERCLQNYIPAHSL------TLSCPVCRQTSILPEK 99
>gi|94536782 tripartite motif-containing 35 isoform 2 [Homo
sapiens]
Length = 493
Score = 41.2 bits (95), Expect = 7e-04
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
Query: 14 CPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLVCPICR 65
C VCY+ FRD + TL CGH FC C+ + +VQ + CP+C+
Sbjct: 21 CAVCYDPFRD----AVTLRCGHNFCRGCVSRC-------WEVQVSPTCPVCK 61
>gi|223890259 midline 2 isoform 2 [Homo sapiens]
Length = 705
Score = 40.4 bits (93), Expect = 0.001
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 14 CPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV---CPICRYVTFL 70
CP+C E F D L C H C C + L+S+ G+ + CP CRYV L
Sbjct: 30 CPICLELFED----PLLLPCAHSLCFSCAHRILVSSCSSGESIEPITAFQCPTCRYVISL 85
Query: 71 SKK 73
+ +
Sbjct: 86 NHR 88
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,605,177
Number of Sequences: 37866
Number of extensions: 527743
Number of successful extensions: 6421
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 464
Number of HSP's that attempted gapping in prelim test: 4991
Number of HSP's gapped (non-prelim): 1867
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.