Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100128430 Sequence: fasta or formatted (124aa) NCBI GI: 239744890
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {173aa} PREDICTED: similar to hCG2012058
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6          7           1
 C cysteine            4.0          5           1
 D aspartate           2.4          3           1
 E glutamate           3.2          4           1
 F phenylalanine       3.2          4           1
 G glycine            11.3         14           1
 H histidine           2.4          3           1
 I isoleucine          2.4          3           1
 K lysine              3.2          4           1
 L leucine             8.9         11           3
 M methionine          1.6          2           1
 N asparagine          3.2          4           1
 P proline            16.9         21           3
 Q glutamine           6.5          8           2
 R arginine            4.0          5           1
 S serine              5.6          7           2
 T threonine           7.3          9           2
 V valine              5.6          7           1
 W tryptophan          1.6          2           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
GLCCI1                0.032   glucocorticoid induced transcript 1 
IRAK4                 0.024   interleukin-1 receptor-associated kinase 4 isoform ...
IRAK4                 0.024   interleukin-1 receptor-associated kinase 4 isoform ...
IRAK4                 0.024   interleukin-1 receptor-associated kinase 4 isoform ...
IRAK4                 0.024   interleukin-1 receptor-associated kinase 4 isoform ...
IRAK4                 0.024   interleukin-1 receptor-associated kinase 4 isoform ...
IKZF4                 0.024   zinc finger protein, subfamily 1A, 4 
BBC3                  0.020   BCL2 binding component 3 isoform 1 
ATXN7L2               0.016   ataxin 7-like 2 
SEC24D                0.016   Sec24-related protein D 
SMARCC1               0.012   SWI/SNF-related matrix-associated actin-dependent r...
ZFHX4                 0.012   zinc finger homeodomain 4 
LOC730351             0.008   PREDICTED: hypothetical protein 
LOC730351             0.008   PREDICTED: hypothetical protein 
LOC730351             0.008   PREDICTED: hypothetical protein 
LOC730351             0.008   PREDICTED: hypothetical protein 
TMEM67                0.008   meckelin isoform 1 
FXYD2                 0.008   FXYD domain-containing ion transport regulator 2 is...
FBXO6                 0.008   F-box only protein 6 
LOC731075             0.008   PREDICTED: hypothetical protein 
LOC731075             0.008   PREDICTED: hypothetical protein 
PDE4DIP               0.008   phosphodiesterase 4D interacting protein isoform 5 [...
MYST3                 0.008   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.008   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.008   MYST histone acetyltransferase (monocytic leukemia)...
OPLAH                 0.008   5-oxoprolinase (ATP-hydrolysing) 
CTDP1                 0.008   CTD (carboxy-terminal domain, RNA polymerase II, pol...
CTDP1                 0.008   CTD (carboxy-terminal domain, RNA polymerase II, pol...
LOC100291176          0.008   PREDICTED: hypothetical protein XP_002346954 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press