Guide to the Human Genome
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Name: LOC731075 Sequence: fasta or formatted (359aa) NCBI GI: 169171033
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {147aa} PREDICTED: hypothetical protein
alt prot {147aa} PREDICTED: hypothetical protein
alt mRNA {359aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         37           2
 C cysteine            4.2         15           2
 D aspartate           3.3         12           1
 E glutamate           3.1         11           1
 F phenylalanine       3.1         11           1
 G glycine             5.8         21           2
 H histidine           2.8         10           1
 I isoleucine          2.2          8           1
 K lysine              1.4          5           1
 L leucine            13.6         49           2
 M methionine          1.9          7           1
 N asparagine          1.7          6           1
 P proline            12.0         43           2
 Q glutamine           4.2         15           1
 R arginine            5.0         18           2
 S serine             14.2         51           3
 T threonine           4.2         15           1
 V valine              5.3         19           2
 W tryptophan          1.1          4           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC731075             1.000   PREDICTED: hypothetical protein 
LOC731075             0.345   PREDICTED: hypothetical protein 
LOC731075             0.345   PREDICTED: hypothetical protein 
SEC16A                0.026   SEC16 homolog A 
LOC100128719          0.023   PREDICTED: hypothetical protein, partial 
LOC100128719          0.023   PREDICTED: hypothetical protein, partial 
BCORL1                0.021   BCL6 co-repressor-like 1 
C13orf23              0.020   hypothetical protein LOC80209 isoform 2 
C13orf23              0.020   hypothetical protein LOC80209 isoform 1 
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
MAVS                  0.020   virus-induced signaling adapter 
FLJ22184              0.018   PREDICTED: hypothetical protein LOC80164 
WNK2                  0.018   WNK lysine deficient protein kinase 2 
TET3                  0.017   tet oncogene family member 3 
LOC100134663          0.017   PREDICTED: hypothetical protein, partial 
FOXC1                 0.017   forkhead box C1 
PTPN23                0.016   protein tyrosine phosphatase, non-receptor type 23 [...
LOC729569             0.016   PREDICTED: hypothetical protein 
WIPF1                 0.016   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.016   WAS/WASL interacting protein family, member 1 
BAT2D1                0.014   HBxAg transactivated protein 2 
SYNJ1                 0.014   synaptojanin 1 isoform a 
SYNJ1                 0.014   synaptojanin 1 isoform d 
MLL2                  0.014   myeloid/lymphoid or mixed-lineage leukemia 2 
MUC6                  0.014   mucin 6, gastric 
MUC12                 0.013   PREDICTED: mucin 12 
LOC100289743          0.013   PREDICTED: hypothetical protein XP_002348163 
TENC1                 0.013   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.013   tensin like C1 domain containing phosphatase isoform...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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