Guide to the Human Genome
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Name: LOC730351 Sequence: fasta or formatted (424aa) NCBI GI: 239508713
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {424aa} PREDICTED: hypothetical protein
alt mRNA {424aa} PREDICTED: hypothetical protein
alt mRNA {424aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         27           2
 C cysteine            2.4         10           1
 D aspartate           0.9          4           1
 E glutamate           8.0         34           2
 F phenylalanine       2.1          9           1
 G glycine            13.4         57           2
 H histidine           5.2         22           1
 I isoleucine          1.4          6           1
 K lysine              6.6         28           2
 L leucine             9.7         41           3
 M methionine          1.2          5           1
 N asparagine          0.9          4           1
 P proline             6.1         26           1
 Q glutamine           3.8         16           3
 R arginine            8.5         36           2
 S serine              9.0         38           2
 T threonine           6.6         28           1
 V valine              5.0         21           2
 W tryptophan          1.7          7           1
 Y tyrosine            1.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730351             1.000   PREDICTED: hypothetical protein 
LOC730351             1.000   PREDICTED: hypothetical protein 
LOC730351             0.998   PREDICTED: hypothetical protein 
RPGR                  0.027   retinitis pigmentosa GTPase regulator isoform C [Hom...
LOC100133599          0.025   PREDICTED: hypothetical protein 
NSBP1                 0.023   nucleosomal binding protein 1 
LOC100131202          0.022   PREDICTED: hypothetical protein 
LOC100131202          0.022   PREDICTED: hypothetical protein 
KIAA0182              0.022   genetic suppressor element 1 isoform 2 
KIAA0182              0.022   genetic suppressor element 1 isoform 1 
ZC3H13                0.020   zinc finger CCCH-type containing 13 
C9orf86               0.020   Rab-like GTP-binding protein 1 isoform 1 
LOC100133599          0.019   PREDICTED: hypothetical protein 
LOC100286959          0.019   PREDICTED: hypothetical protein XP_002343921 
PRPF38B               0.018   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
RBM25                 0.018   RNA binding motif protein 25 
NEFM                  0.018   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.018   neurofilament, medium polypeptide 150kDa isoform 2 ...
SNRNP70               0.016   U1 small nuclear ribonucleoprotein 70 kDa 
RSRC2                 0.016   arginine/serine-rich coiled-coil 2 isoform b 
RSRC2                 0.016   arginine/serine-rich coiled-coil 2 isoform a 
LOC100294088          0.016   PREDICTED: hypothetical protein, partial 
ACIN1                 0.016   apoptotic chromatin condensation inducer 1 
CYLC2                 0.016   cylicin 2 
VGF                   0.016   VGF nerve growth factor inducible precursor 
LOC100292370          0.015   PREDICTED: hypothetical protein 
DDX50                 0.015   nucleolar protein GU2 
AP3B1                 0.014   adaptor-related protein complex 3, beta 1 subunit [H...
LOC100294476          0.014   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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