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Search of human proteins with 239744758
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744758 PREDICTED: hypothetical protein XP_002343261 [Homo
sapiens]
(324 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744758 PREDICTED: hypothetical protein XP_002343261 [Homo ... 669 0.0
gi|239755945 PREDICTED: hypothetical protein [Homo sapiens] 141 9e-34
gi|239750458 PREDICTED: hypothetical protein [Homo sapiens] 141 9e-34
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 40 0.003
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 40 0.003
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 40 0.003
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 40 0.003
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 40 0.003
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 40 0.003
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 40 0.003
gi|12751477 forkhead box L2 [Homo sapiens] 39 0.006
gi|41281612 zinc finger protein 828 [Homo sapiens] 39 0.008
gi|163965366 nascent polypeptide-associated complex alpha subuni... 37 0.024
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 36 0.041
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 36 0.053
gi|13376611 zinc finger protein 703 [Homo sapiens] 35 0.090
gi|21704281 junctophilin 2 isoform 1 [Homo sapiens] 35 0.090
gi|51479192 ring finger protein 1 [Homo sapiens] 35 0.090
gi|34335253 disks large-associated protein 4 isoform a [Homo sap... 35 0.12
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 35 0.12
gi|37595553 ring finger protein 111 [Homo sapiens] 35 0.12
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 34 0.15
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 34 0.15
gi|48762934 alpha 2 type I collagen [Homo sapiens] 34 0.15
gi|19924103 synapsin II isoform IIa [Homo sapiens] 34 0.15
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 34 0.15
gi|88759346 GATA zinc finger domain containing 1 [Homo sapiens] 34 0.20
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 34 0.20
gi|148536864 SWI/SNF-related matrix-associated actin-dependent r... 34 0.20
gi|148806874 hypothetical protein LOC54754 [Homo sapiens] 34 0.20
>gi|239744758 PREDICTED: hypothetical protein XP_002343261 [Homo
sapiens]
Length = 324
Score = 669 bits (1726), Expect = 0.0
Identities = 324/324 (100%), Positives = 324/324 (100%)
Query: 1 MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSESLDLG 60
MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSESLDLG
Sbjct: 1 MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSESLDLG 60
Query: 61 GYSIVFPVVAPGPHLLTPMGAGSLSATGVGSPGPGGFHGAMESKALAPAGTSGGLAWAPQ 120
GYSIVFPVVAPGPHLLTPMGAGSLSATGVGSPGPGGFHGAMESKALAPAGTSGGLAWAPQ
Sbjct: 61 GYSIVFPVVAPGPHLLTPMGAGSLSATGVGSPGPGGFHGAMESKALAPAGTSGGLAWAPQ 120
Query: 121 RPQPTPKPHARQAHRGGAQPPGHLGHWKDQPVRFSSKKLVSWDTSERKRQFRRRMFSLAN 180
RPQPTPKPHARQAHRGGAQPPGHLGHWKDQPVRFSSKKLVSWDTSERKRQFRRRMFSLAN
Sbjct: 121 RPQPTPKPHARQAHRGGAQPPGHLGHWKDQPVRFSSKKLVSWDTSERKRQFRRRMFSLAN 180
Query: 181 MRVKMPPRIPAANELIADKRYYSTMSFQTSDHTRLPPPAAGRPGSPTAAPLQGWHPCGVP 240
MRVKMPPRIPAANELIADKRYYSTMSFQTSDHTRLPPPAAGRPGSPTAAPLQGWHPCGVP
Sbjct: 181 MRVKMPPRIPAANELIADKRYYSTMSFQTSDHTRLPPPAAGRPGSPTAAPLQGWHPCGVP 240
Query: 241 LIPSGSPPQGRGVRGRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAINGAARVVGQEG 300
LIPSGSPPQGRGVRGRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAINGAARVVGQEG
Sbjct: 241 LIPSGSPPQGRGVRGRAWGLSQLPANGQQAHDDDSRAELIHAFLDDDAINGAARVVGQEG 300
Query: 301 PYLPRAATMRKKEAATRKATSGLV 324
PYLPRAATMRKKEAATRKATSGLV
Sbjct: 301 PYLPRAATMRKKEAATRKATSGLV 324
>gi|239755945 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 141 bits (355), Expect = 9e-34
Identities = 77/104 (74%), Positives = 79/104 (75%), Gaps = 4/104 (3%)
Query: 225 SPTAAPLQGWHPCGVP---LIPSGSPPQGRGVR-GRAWGLSQLPANGQQAHDDDSRAELI 280
S T + W P P L PP + RAWGLSQLPANGQQAHDDDSRAELI
Sbjct: 48 SLTMVVSEAWEPHRSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELI 107
Query: 281 HAFLDDDAINGAARVVGQEGPYLPRAATMRKKEAATRKATSGLV 324
HAFLDDDAINGAARVVGQEGPYLPRAATMRKKEAATRKATSGLV
Sbjct: 108 HAFLDDDAINGAARVVGQEGPYLPRAATMRKKEAATRKATSGLV 151
Score = 114 bits (284), Expect = 2e-25
Identities = 55/56 (98%), Positives = 56/56 (100%)
Query: 1 MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSES 56
MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSE+
Sbjct: 1 MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSEA 56
>gi|239750458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 151
Score = 141 bits (355), Expect = 9e-34
Identities = 77/104 (74%), Positives = 79/104 (75%), Gaps = 4/104 (3%)
Query: 225 SPTAAPLQGWHPCGVP---LIPSGSPPQGRGVR-GRAWGLSQLPANGQQAHDDDSRAELI 280
S T + W P P L PP + RAWGLSQLPANGQQAHDDDSRAELI
Sbjct: 48 SLTMVVSEAWEPHRSPTPGLASLRGPPHSQWEPPSRAWGLSQLPANGQQAHDDDSRAELI 107
Query: 281 HAFLDDDAINGAARVVGQEGPYLPRAATMRKKEAATRKATSGLV 324
HAFLDDDAINGAARVVGQEGPYLPRAATMRKKEAATRKATSGLV
Sbjct: 108 HAFLDDDAINGAARVVGQEGPYLPRAATMRKKEAATRKATSGLV 151
Score = 114 bits (284), Expect = 2e-25
Identities = 55/56 (98%), Positives = 56/56 (100%)
Query: 1 MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSES 56
MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSE+
Sbjct: 1 MLDTIMMMGKPMKVTKESCHERLNMKTTTPVTLTVFRRKTLMFWETRSLTMVVSEA 56
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 40.0 bits (92), Expect = 0.003
Identities = 53/184 (28%), Positives = 70/184 (38%), Gaps = 25/184 (13%)
Query: 91 SPGPGGFHGAMESKALAPA-GTSGGLAWAPQRPQPTPKP--HARQAHRGGAQPPGHLGHW 147
SPGPG GAM L P+ G S G A + P P P H G P ++ H
Sbjct: 17 SPGPGPSPGAM----LGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNM-HQ 71
Query: 148 KDQPVRFSSKKLVSWDTSERKRQFRRRMFSLANMRVKMPPRIPAANELIADKRYYSTMSF 207
+P+ +K +S D R Q + PP P + Y S +
Sbjct: 72 MHKPMESMHEKGMSDD--PRYNQMKGMGMRSGGHAGMGPPPSPMDQH---SQGYPSPLG- 125
Query: 208 QTSDHTRLPPPAAGRPGSPTAAPLQGWHPCGVPLIPSGSPPQGRGVRGRAWGLSQLPANG 267
S+H P PA+G P++ P P G PL G+ PQ G + R P N
Sbjct: 126 -GSEHASSPVPASG----PSSGPQMSSGPGGAPL--DGADPQALGQQNR----GPTPFNQ 174
Query: 268 QQAH 271
Q H
Sbjct: 175 NQLH 178
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 40.0 bits (92), Expect = 0.003
Identities = 53/184 (28%), Positives = 70/184 (38%), Gaps = 25/184 (13%)
Query: 91 SPGPGGFHGAMESKALAPA-GTSGGLAWAPQRPQPTPKP--HARQAHRGGAQPPGHLGHW 147
SPGPG GAM L P+ G S G A + P P P H G P ++ H
Sbjct: 17 SPGPGPSPGAM----LGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNM-HQ 71
Query: 148 KDQPVRFSSKKLVSWDTSERKRQFRRRMFSLANMRVKMPPRIPAANELIADKRYYSTMSF 207
+P+ +K +S D R Q + PP P + Y S +
Sbjct: 72 MHKPMESMHEKGMSDD--PRYNQMKGMGMRSGGHAGMGPPPSPMDQH---SQGYPSPLG- 125
Query: 208 QTSDHTRLPPPAAGRPGSPTAAPLQGWHPCGVPLIPSGSPPQGRGVRGRAWGLSQLPANG 267
S+H P PA+G P++ P P G PL G+ PQ G + R P N
Sbjct: 126 -GSEHASSPVPASG----PSSGPQMSSGPGGAPL--DGADPQALGQQNR----GPTPFNQ 174
Query: 268 QQAH 271
Q H
Sbjct: 175 NQLH 178
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 40.0 bits (92), Expect = 0.003
Identities = 53/184 (28%), Positives = 70/184 (38%), Gaps = 25/184 (13%)
Query: 91 SPGPGGFHGAMESKALAPA-GTSGGLAWAPQRPQPTPKP--HARQAHRGGAQPPGHLGHW 147
SPGPG GAM L P+ G S G A + P P P H G P ++ H
Sbjct: 17 SPGPGPSPGAM----LGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNM-HQ 71
Query: 148 KDQPVRFSSKKLVSWDTSERKRQFRRRMFSLANMRVKMPPRIPAANELIADKRYYSTMSF 207
+P+ +K +S D R Q + PP P + Y S +
Sbjct: 72 MHKPMESMHEKGMSDD--PRYNQMKGMGMRSGGHAGMGPPPSPMDQH---SQGYPSPLG- 125
Query: 208 QTSDHTRLPPPAAGRPGSPTAAPLQGWHPCGVPLIPSGSPPQGRGVRGRAWGLSQLPANG 267
S+H P PA+G P++ P P G PL G+ PQ G + R P N
Sbjct: 126 -GSEHASSPVPASG----PSSGPQMSSGPGGAPL--DGADPQALGQQNR----GPTPFNQ 174
Query: 268 QQAH 271
Q H
Sbjct: 175 NQLH 178
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 40.0 bits (92), Expect = 0.003
Identities = 53/184 (28%), Positives = 70/184 (38%), Gaps = 25/184 (13%)
Query: 91 SPGPGGFHGAMESKALAPA-GTSGGLAWAPQRPQPTPKP--HARQAHRGGAQPPGHLGHW 147
SPGPG GAM L P+ G S G A + P P P H G P ++ H
Sbjct: 17 SPGPGPSPGAM----LGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNM-HQ 71
Query: 148 KDQPVRFSSKKLVSWDTSERKRQFRRRMFSLANMRVKMPPRIPAANELIADKRYYSTMSF 207
+P+ +K +S D R Q + PP P + Y S +
Sbjct: 72 MHKPMESMHEKGMSDD--PRYNQMKGMGMRSGGHAGMGPPPSPMDQH---SQGYPSPLG- 125
Query: 208 QTSDHTRLPPPAAGRPGSPTAAPLQGWHPCGVPLIPSGSPPQGRGVRGRAWGLSQLPANG 267
S+H P PA+G P++ P P G PL G+ PQ G + R P N
Sbjct: 126 -GSEHASSPVPASG----PSSGPQMSSGPGGAPL--DGADPQALGQQNR----GPTPFNQ 174
Query: 268 QQAH 271
Q H
Sbjct: 175 NQLH 178
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 40.0 bits (92), Expect = 0.003
Identities = 53/184 (28%), Positives = 70/184 (38%), Gaps = 25/184 (13%)
Query: 91 SPGPGGFHGAMESKALAPA-GTSGGLAWAPQRPQPTPKP--HARQAHRGGAQPPGHLGHW 147
SPGPG GAM L P+ G S G A + P P P H G P ++ H
Sbjct: 17 SPGPGPSPGAM----LGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNM-HQ 71
Query: 148 KDQPVRFSSKKLVSWDTSERKRQFRRRMFSLANMRVKMPPRIPAANELIADKRYYSTMSF 207
+P+ +K +S D R Q + PP P + Y S +
Sbjct: 72 MHKPMESMHEKGMSDD--PRYNQMKGMGMRSGGHAGMGPPPSPMDQH---SQGYPSPLG- 125
Query: 208 QTSDHTRLPPPAAGRPGSPTAAPLQGWHPCGVPLIPSGSPPQGRGVRGRAWGLSQLPANG 267
S+H P PA+G P++ P P G PL G+ PQ G + R P N
Sbjct: 126 -GSEHASSPVPASG----PSSGPQMSSGPGGAPL--DGADPQALGQQNR----GPTPFNQ 174
Query: 268 QQAH 271
Q H
Sbjct: 175 NQLH 178
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 40.0 bits (92), Expect = 0.003
Identities = 53/184 (28%), Positives = 70/184 (38%), Gaps = 25/184 (13%)
Query: 91 SPGPGGFHGAMESKALAPA-GTSGGLAWAPQRPQPTPKP--HARQAHRGGAQPPGHLGHW 147
SPGPG GAM L P+ G S G A + P P P H G P ++ H
Sbjct: 17 SPGPGPSPGAM----LGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNM-HQ 71
Query: 148 KDQPVRFSSKKLVSWDTSERKRQFRRRMFSLANMRVKMPPRIPAANELIADKRYYSTMSF 207
+P+ +K +S D R Q + PP P + Y S +
Sbjct: 72 MHKPMESMHEKGMSDD--PRYNQMKGMGMRSGGHAGMGPPPSPMDQH---SQGYPSPLG- 125
Query: 208 QTSDHTRLPPPAAGRPGSPTAAPLQGWHPCGVPLIPSGSPPQGRGVRGRAWGLSQLPANG 267
S+H P PA+G P++ P P G PL G+ PQ G + R P N
Sbjct: 126 -GSEHASSPVPASG----PSSGPQMSSGPGGAPL--DGADPQALGQQNR----GPTPFNQ 174
Query: 268 QQAH 271
Q H
Sbjct: 175 NQLH 178
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 40.0 bits (92), Expect = 0.003
Identities = 53/184 (28%), Positives = 70/184 (38%), Gaps = 25/184 (13%)
Query: 91 SPGPGGFHGAMESKALAPA-GTSGGLAWAPQRPQPTPKP--HARQAHRGGAQPPGHLGHW 147
SPGPG GAM L P+ G S G A + P P P H G P ++ H
Sbjct: 17 SPGPGPSPGAM----LGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQDNM-HQ 71
Query: 148 KDQPVRFSSKKLVSWDTSERKRQFRRRMFSLANMRVKMPPRIPAANELIADKRYYSTMSF 207
+P+ +K +S D R Q + PP P + Y S +
Sbjct: 72 MHKPMESMHEKGMSDD--PRYNQMKGMGMRSGGHAGMGPPPSPMDQH---SQGYPSPLG- 125
Query: 208 QTSDHTRLPPPAAGRPGSPTAAPLQGWHPCGVPLIPSGSPPQGRGVRGRAWGLSQLPANG 267
S+H P PA+G P++ P P G PL G+ PQ G + R P N
Sbjct: 126 -GSEHASSPVPASG----PSSGPQMSSGPGGAPL--DGADPQALGQQNR----GPTPFNQ 174
Query: 268 QQAH 271
Q H
Sbjct: 175 NQLH 178
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 38.9 bits (89), Expect = 0.006
Identities = 29/83 (34%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 80 GAGSLSATGV--GSPGPGGFHGA---MESKALAPA------GTSGGLAWAPQRPQPTPKP 128
G GS A V G GP +G ++S AL P G G A P P P P P
Sbjct: 235 GPGSPGAAAVVKGLAGPAASYGPYTRVQSMALPPGVVNSYNGLGGPPAAPPPPPHPHPHP 294
Query: 129 HARQAHRGGAQPPGHLGHWKDQP 151
HA H A PP H P
Sbjct: 295 HAHHLHAAAAPPPAPPHHGAAAP 317
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 38.5 bits (88), Expect = 0.008
Identities = 46/187 (24%), Positives = 69/187 (36%), Gaps = 38/187 (20%)
Query: 66 FPVVAPGPHLLTP-MGAGSLSATGVGSPGPGGFHGAMESKALAPAGTSGGLAWAPQRPQP 124
FP V+P P P + GS GSP P + + S PA + ++ P +P P
Sbjct: 293 FPAVSPEPRRPAPAVSPGSWKPGPPGSPRPWKSNPSASSGPWKPAKPAPSVSPGPWKPIP 352
Query: 125 TPKPHARQAHRGGAQPPGHLGHWKDQPVRFSSKKLVSWDTSERKRQFRRRMFSLANMRVK 184
+ P G WK P S SW +S S++ K
Sbjct: 353 SVSP----------------GPWKPTP----SVSSASWKSS-----------SVSPSSWK 381
Query: 185 MPPRIPAANELIADKRYYSTMSFQTSDHTRLPP--PAAGRPGSPTAAPLQGWHPCGVPLI 242
PP P + + + + + +PP P +PG P + ++ P G P +
Sbjct: 382 SPPASPESWKSGPPELRKTAPTLSPEHWKAVPPVSPELRKPGPPLSPEIRS--PAGSPEL 439
Query: 243 --PSGSP 247
PSGSP
Sbjct: 440 RKPSGSP 446
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 37.0 bits (84), Expect = 0.024
Identities = 48/193 (24%), Positives = 59/193 (30%), Gaps = 54/193 (27%)
Query: 60 GGYSIVFPVVAPGPHLLTPMGAGSLSATGVGSPGPGGFHGAMESKALAPAGTSGGLAWAP 119
GG + P AP TP G+ +P P GA + A P GG A P
Sbjct: 1207 GGLATPSPKGAP----TTPAATPPSPKGGLATPSP---KGAPTTPAATPPSPKGGPATPP 1259
Query: 120 QRPQPTPKPHARQAHRGGAQPPGHLGHWKDQPVRFSSKKLVSWDTSERKRQFRRRMFSLA 179
+ PTP + +GG P H G V S K A
Sbjct: 1260 PKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPK-----------------GGPA 1302
Query: 180 NMRVKMPPRIPAANELIADKRYYSTMSFQTSDHTRLPPPAAGRPGSPTAAPLQGWHPCGV 239
K P PAA PP G PG+P P G
Sbjct: 1303 TSPPKGAPTPPAAT----------------------PPSPKGSPGTPP--------PKGA 1332
Query: 240 PLIPSGSPPQGRG 252
P P+ +PP +G
Sbjct: 1333 PTPPAVTPPSPKG 1345
Score = 35.0 bits (79), Expect = 0.090
Identities = 49/196 (25%), Positives = 59/196 (30%), Gaps = 31/196 (15%)
Query: 60 GGYSIVFPVVAPGPHLLTPMGAGSLSATGVGSPGPGGFHGAMESKALAPAGTSGGLAWAP 119
GG + P AP TP G+ +P P GA + A P GGLA
Sbjct: 1161 GGLATPPPKGAP----TTPAATPPSPKGGLATPSP---KGAPTTPAATPPSPKGGLATPS 1213
Query: 120 QRPQPTPKPHARQAHRGGAQPPGHLGHWKDQPVRFSSKKLVSWDTSERKRQFRRRMFSLA 179
+ PT + +GG P G S K A
Sbjct: 1214 PKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPK-----------------GGPA 1256
Query: 180 NMRVKMPPRIPAANELIADKRYYSTMSFQTSDHTRLPPPAAGRPGSPTAAPLQGWHPCGV 239
K P PAA T H P PA P SP P P G
Sbjct: 1257 TPPPKGAPTPPAATPPSLKG------GLATPPHKGAPNPAVVTPPSPKGGPATS-PPKGA 1309
Query: 240 PLIPSGSPPQGRGVRG 255
P P+ +PP +G G
Sbjct: 1310 PTPPAATPPSPKGSPG 1325
Score = 33.9 bits (76), Expect = 0.20
Identities = 48/197 (24%), Positives = 66/197 (33%), Gaps = 36/197 (18%)
Query: 70 APGPHLLTPMGAGSLSATGVGSPGPGGFHGAMESKALAPAGTSGGLAWAPQRPQPTPKPH 129
AP P TP G +P P GA A P GGLA P + PT
Sbjct: 1079 APTPPAATPPSPKG----GPATPSP---KGAPMPPAATPPSPKGGLATPPHKGAPTTPAA 1131
Query: 130 ARQAHRGG--------------AQPPGHLGHWKDQPVRFSSKKLVSWDTSERKRQFRRRM 175
+ +GG A PP G P + + + S +
Sbjct: 1132 TPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKG------- 1184
Query: 176 FSLANMRVKMPPRIPAANELIADKRYYSTMSFQTSDHTRLPPPAAGRPGSPTAAPLQGWH 235
LA K P PAA + K +T S + + T P + + G T +P
Sbjct: 1185 -GLATPSPKGAPTTPAATP-PSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPK---- 1238
Query: 236 PCGVPLIPSGSPPQGRG 252
G P P+ +PP +G
Sbjct: 1239 --GAPTTPAATPPSPKG 1253
Score = 32.7 bits (73), Expect = 0.45
Identities = 55/211 (26%), Positives = 69/211 (32%), Gaps = 32/211 (15%)
Query: 67 PVVAPGPHLLTPMGAGSLSATGVGSPGPGGFHGAMESKALAPAGTSGGLAWAPQRPQPTP 126
P AP P TP G +P P A A P GG A + PTP
Sbjct: 936 PKGAPTPPAATPPSPKG----GPATPSP---KWAPTPPAATPPSPKGGPATPSPKGAPTP 988
Query: 127 KPHARQAHRGGAQPPGHLG----------HWKDQPVRFSSKKLVSWDTSERKRQFRRRMF 176
+ +GG P G K P K S T +
Sbjct: 989 PAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGAS--TPPAATPPSPKGS 1046
Query: 177 SLANMRVKMPPRIPAANELIADKRYYSTMSFQTSDHTRLPPPAAGRPGSPTAAPLQGWHP 236
A K P PAA L + K +T S + + P P A P SP P P
Sbjct: 1047 PAATPLPKGAPTTPAAT-LPSPKGGPATPSLKGA-----PTPPAATPPSPKGGPATP-SP 1099
Query: 237 CGVPLIPSGSPPQGRGVRGRAWGLSQLPANG 267
G P+ P+ +PP +G GL+ P G
Sbjct: 1100 KGAPMPPAATPPSPKG------GLATPPHKG 1124
>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
[Homo sapiens]
Length = 593
Score = 36.2 bits (82), Expect = 0.041
Identities = 36/124 (29%), Positives = 48/124 (38%), Gaps = 23/124 (18%)
Query: 88 GVGSPGPG--GFHGAMESKALAPAGTSGG----LAWAPQRPQPTPKPHARQAHRGGA--- 138
G+G PGP G KA P G + +RP P P AH GGA
Sbjct: 158 GLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVLGGQERPGPGP------AHPGGAAHV 211
Query: 139 ----QPPGHLGHWKDQPVRFSSKKLVSWDTSERKRQFRRRMFSLANMRVKMPPRIPAANE 194
QPP H G W + K+L D ++++F +FS R RIP +
Sbjct: 212 APQLQPPDH-GDWTYEE---QFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAK 267
Query: 195 LIAD 198
+ D
Sbjct: 268 QVLD 271
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 35.8 bits (81), Expect = 0.053
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 90 GSPGPGGFHGAMESKA-LAPAGTSGGLAWAPQRPQPTPKPHARQAHRGGAQPPGHLG 145
G PG GF G+ +K + PAG+ G QR +P P Q H G PPG G
Sbjct: 336 GPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGP-----QGHAGAQGPPGPPG 387
Score = 35.0 bits (79), Expect = 0.090
Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 90 GSPGPGGFHGAMESKALA----PAGTSG--GLAWAPQRPQP--TPKPHARQAHRGGAQPP 141
GSPGP G GA+ S A P G SG G P P P P + RG P
Sbjct: 1119 GSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSP 1178
Query: 142 GHLG 145
GH G
Sbjct: 1179 GHPG 1182
>gi|13376611 zinc finger protein 703 [Homo sapiens]
Length = 590
Score = 35.0 bits (79), Expect = 0.090
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 58 DLGGYSIVFPVVAPGPHLLTPMGAGSLSATGVGSPGPGGFHGAMESKALAPAGTSGG-LA 116
D G+ + P P P+ A S S++ GS G H ++ G GG L
Sbjct: 188 DKAGFRVPSAACPPFPPHGAPVSASSSSSSPGGSRGGSPHHSDCKNGG----GVGGGELD 243
Query: 117 WAPQRPQPTPKPHARQAHRGGAQPPGHLG 145
Q P+P+P+P A RGG PG G
Sbjct: 244 KKDQEPKPSPEPAA--VSRGGGGEPGAHG 270
Score = 32.3 bits (72), Expect = 0.59
Identities = 50/196 (25%), Positives = 76/196 (38%), Gaps = 33/196 (16%)
Query: 95 GGFHGAME--------SKALAPAGTSGGLAWAPQ-RPQPTPKPHARQAHRGGAQPPGHLG 145
GG+HGA A PAG S P P +P A + A PGH
Sbjct: 383 GGYHGASHLGGSSCSTCSAHDPAGPSLKAGGYPLVYPGHPLQPAALSSSAAQAALPGHPL 442
Query: 146 HW-----KDQPVRFSSKKLVSWDTSERKRQFRRRMFSLANMRVKMPPRIPAANELIADKR 200
+ +++P+ S + + +++ + S ++ +P A +L+A
Sbjct: 443 YTYGFMLQNEPLPHSCNWVAASGPCDKRFATSEELLS----HLRTHTALPGAEKLLAAYP 498
Query: 201 YYSTM-------SFQTSDHTRLPPPAAGRPGSPTAAPLQGWHPCGVPLIPSGSPPQGRGV 253
S + + S H LPPPAA PGSP + L+ H G+ S P G+
Sbjct: 499 GASGLGSAAAAAAAAASCHLHLPPPAA--PGSPGSLSLRNPHTLGL----SRYHPYGKSH 552
Query: 254 RGRAWGLS--QLPANG 267
A GL+ LP G
Sbjct: 553 LSTAGGLAVPSLPTAG 568
>gi|21704281 junctophilin 2 isoform 1 [Homo sapiens]
Length = 696
Score = 35.0 bits (79), Expect = 0.090
Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 35/159 (22%)
Query: 106 LAPAGTSGGLAWAPQRPQPTPKPHARQAHR--GGAQPPGHL------------------- 144
L P G A PQ P+ +P+ H R+ R GG+ P
Sbjct: 450 LEPPDRGAGAAGLPQPPRESPQLHERETPRPEGGSPSPAGTPPQPKRPRPGVSKDGLLSP 509
Query: 145 GHWKDQPVRFSSKKLVSWDTSERKRQFRRRMFSLANMRVKMPPRIPAANELIADKRYYST 204
G W +P S+ + + + R+ R +A ++ PP P+ +A + Y +
Sbjct: 510 GAWNGEPSGEGSRSVTPSEGAGRRSPARPATERMAIEALQAPP-APSREPEVALYQGYHS 568
Query: 205 MSFQTSDHTRLPPP-----------AAGRPGSPTAAPLQ 232
+ +T+ PPP + P SP APLQ
Sbjct: 569 YAVRTTPPE--PPPFEDQPEPEVSGSESAPSSPATAPLQ 605
>gi|51479192 ring finger protein 1 [Homo sapiens]
Length = 406
Score = 35.0 bits (79), Expect = 0.090
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 67 PVVAPGPHLLTPMGAGSL-SATGVGSPGPGGFHGAMESKALAP-AGTSGGLAWAPQRPQP 124
P APGP P G G+ S+ G G G GG G S+ GT GG P P
Sbjct: 192 PDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPG 251
Query: 125 TPKP 128
P P
Sbjct: 252 APSP 255
>gi|34335253 disks large-associated protein 4 isoform a [Homo
sapiens]
Length = 989
Score = 34.7 bits (78), Expect = 0.12
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 100 AMESKALAPAGTSGGLAWAPQRPQPTPKPHARQAHRGGAQPPGHLGHWKDQPVRFSSKKL 159
+++S P+ T GG+A AP+ P+P PK A ++ + G L + P +KL
Sbjct: 611 SLDSSTRPPSVTRGGVAPAPEAPEPPPKHAALKSEQ------GTLTSSESHPEAAPKRKL 664
Query: 160 VSWDTSERKRQ 170
S ER R+
Sbjct: 665 SSIGIQERTRR 675
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 34.7 bits (78), Expect = 0.12
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 216 PPPAAGRPGSPTAAPLQGWHPCGVPLIPSGSP----PQGRGVRGRAWGLSQLPANG 267
P P RP SP + P G P P S + P R GR W L+ LP++G
Sbjct: 38 PSPTLSRPLSPLSVPTAGSSPLDSPRNFSAASALNFPFARRADGRRWSLASLPSSG 93
>gi|37595553 ring finger protein 111 [Homo sapiens]
Length = 986
Score = 34.7 bits (78), Expect = 0.12
Identities = 52/217 (23%), Positives = 75/217 (34%), Gaps = 42/217 (19%)
Query: 67 PVVAPGPHLLTPMGAGSLSAT---------------GVGSPGPGGFHGAMESKALAPAGT 111
PV P P + P GA S S T G+ S G G FHGA P +
Sbjct: 538 PVERP-PQVQAPCGANSSSGTSYHEQQALPVDLSNSGIRSHGSGSFHGASAFDPCCPVSS 596
Query: 112 SGGLAWAPQRPQPTPKPHARQAHRGGA--------QPPGHLGHWKDQPVRFSSKKLVSWD 163
S + Q P G+ QPP QP S + +
Sbjct: 597 SRAAIFGHQAAAAAPSQPLSSIDGYGSSMVAQPQPQPP-------PQPSLSSCRHYMPPP 649
Query: 164 TSERKRQFRRRMFSLANMRVKMPPRI---PAANELIAD--KRYYSTMSFQTSDHTRLPPP 218
+ R + + + PP+ P + +I ++S +S + H PPP
Sbjct: 650 YASLTRPLHHQASACPHSHGNPPPQTQPPPQVDYVIPHPVHAFHSQISSHATSHPVAPPP 709
Query: 219 AAGRPGSPTAAPL-QGWHPCGVPL---IPSGSPPQGR 251
+ TAAP+ Q P P+ IP+ +PP R
Sbjct: 710 PTHL--ASTAAPIPQHLPPTHQPISHHIPATAPPAQR 744
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 34.3 bits (77), Expect = 0.15
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 67 PVVAPGPHLLTPMGAGSLSATGVGSPGPGGFHGAMESKALAPAGTSGGLAWAPQRPQPTP 126
P APGP T + + G PG GF GA + + P G++G P P P+
Sbjct: 868 PSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGA--AGRVGPPGSNGN-PGPPGPPGPSG 924
Query: 127 KPHARQAHRGGAQPPGHLG 145
K + A RG + PPG G
Sbjct: 925 KDGPKGA-RGDSGPPGRAG 942
Score = 33.1 bits (74), Expect = 0.34
Identities = 28/87 (32%), Positives = 31/87 (35%), Gaps = 18/87 (20%)
Query: 67 PVVAPGPHLLTPMGA-GSLSATG-------VGSPGPGGFHGAMESKALAPAGTSGGLAWA 118
P +A P P G G ATG G PG GF G P G G
Sbjct: 425 PGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQ-----GPKGEPG----- 474
Query: 119 PQRPQPTPKPHARQAHRGGAQPPGHLG 145
P PQ P P + RG PG +G
Sbjct: 475 PAGPQGAPGPAGEEGKRGARGEPGGVG 501
Score = 31.6 bits (70), Expect = 1.0
Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 60 GGYSIVFPVVAPGPHLLTPMGAGSLSATG-VGSPGPGGFHGAM----ESKALAPAGTSGG 114
GG + P+ PGP AG+ G VG PGP G GA E P G +G
Sbjct: 783 GGRGLTGPIGPPGP-------AGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGF 835
Query: 115 LAWAPQRPQPTPKPHARQA-HRGGAQPPGHLG 145
QP K +A +G A PG G
Sbjct: 836 AGPPGADGQPGAKGEQGEAGQKGDAGAPGPQG 867
Score = 30.0 bits (66), Expect = 2.9
Identities = 25/69 (36%), Positives = 26/69 (37%), Gaps = 18/69 (26%)
Query: 90 GSPGPGGFHGAMESKALAPAGTSG-----------GLAWAPQRPQPT--PKPHARQAHRG 136
G PGP G GA PAG SG G A P P P P R G
Sbjct: 1143 GPPGPSGDQGAS-----GPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETG 1197
Query: 137 GAQPPGHLG 145
A PPG+ G
Sbjct: 1198 PAGPPGNPG 1206
Score = 28.5 bits (62), Expect = 8.5
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 90 GSPGPGGFHGAMESKALAPA-GTSG--GLAWAPQRPQPTPKPHARQAHRGGAQPPGHLG 145
GSPGP G G + + A G++G G+A AP P P P Q G P G G
Sbjct: 399 GSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPP-GPQGATGPLGPKGQTG 456
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 34.3 bits (77), Expect = 0.15
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 67 PVVAPGPHLLTPMGAGSLSATGVGSPGPGGFHGAMESKALAPAGTSGGLAWAPQRPQPTP 126
P APGP T + + G PG GF GA + + P G++G P P P+
Sbjct: 799 PSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGA--AGRVGPPGSNGN-PGPPGPPGPSG 855
Query: 127 KPHARQAHRGGAQPPGHLG 145
K + A RG + PPG G
Sbjct: 856 KDGPKGA-RGDSGPPGRAG 873
Score = 33.1 bits (74), Expect = 0.34
Identities = 28/87 (32%), Positives = 31/87 (35%), Gaps = 18/87 (20%)
Query: 67 PVVAPGPHLLTPMGA-GSLSATG-------VGSPGPGGFHGAMESKALAPAGTSGGLAWA 118
P +A P P G G ATG G PG GF G P G G
Sbjct: 356 PGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQ-----GPKGEPG----- 405
Query: 119 PQRPQPTPKPHARQAHRGGAQPPGHLG 145
P PQ P P + RG PG +G
Sbjct: 406 PAGPQGAPGPAGEEGKRGARGEPGGVG 432
Score = 31.6 bits (70), Expect = 1.0
Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 60 GGYSIVFPVVAPGPHLLTPMGAGSLSATG-VGSPGPGGFHGAM----ESKALAPAGTSGG 114
GG + P+ PGP AG+ G VG PGP G GA E P G +G
Sbjct: 714 GGRGLTGPIGPPGP-------AGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGF 766
Query: 115 LAWAPQRPQPTPKPHARQA-HRGGAQPPGHLG 145
QP K +A +G A PG G
Sbjct: 767 AGPPGADGQPGAKGEQGEAGQKGDAGAPGPQG 798
Score = 30.0 bits (66), Expect = 2.9
Identities = 25/69 (36%), Positives = 26/69 (37%), Gaps = 18/69 (26%)
Query: 90 GSPGPGGFHGAMESKALAPAGTSG-----------GLAWAPQRPQPT--PKPHARQAHRG 136
G PGP G GA PAG SG G A P P P P R G
Sbjct: 1074 GPPGPSGDQGAS-----GPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETG 1128
Query: 137 GAQPPGHLG 145
A PPG+ G
Sbjct: 1129 PAGPPGNPG 1137
Score = 28.5 bits (62), Expect = 8.5
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 90 GSPGPGGFHGAMESKALAPA-GTSG--GLAWAPQRPQPTPKPHARQAHRGGAQPPGHLG 145
GSPGP G G + + A G++G G+A AP P P P Q G P G G
Sbjct: 330 GSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPP-GPQGATGPLGPKGQTG 387
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 34.3 bits (77), Expect = 0.15
Identities = 33/93 (35%), Positives = 37/93 (39%), Gaps = 24/93 (25%)
Query: 67 PVVAPGPHLLTPMG----AGSLSATG----VGSPGPGGFHGAMESKALAPAGTSGGLAWA 118
P VA P L P G G+ ATG VG PGP G G ES G++G
Sbjct: 315 PGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKG--ESGNKGEPGSAG----- 367
Query: 119 PQRPQPTPKPHARQAHR------GGAQPPGHLG 145
PQ P P + R G A PPG G
Sbjct: 368 ---PQGPPGPSGEEGKRGPNGEAGSAGPPGPPG 397
Score = 28.9 bits (63), Expect = 6.5
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 70 APGPHLLTPMGAGSLSATG----VGSPGPGGFHGAMESKALAPAGTSG--GLAWAPQRPQ 123
APG + TP G+ G VG+PGP G G+ ++ P G +G G A P P
Sbjct: 203 APGENG-TPGQTGARGLPGERGRVGAPGPAGARGS--DGSVGPVGPAGPIGSAGPPGFP- 258
Query: 124 PTPKPHARQAHRGGAQPPGHLG 145
P P G A P G G
Sbjct: 259 GAPGPKGEIGAVGNAGPAGPAG 280
Score = 28.9 bits (63), Expect = 6.5
Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 71 PGPHLLTPMGAGSLSATGVGSPGPGGFHGAMESKALAPAGTSGGLAWAPQRPQPTPKPHA 130
PGP + S A VG PG G HG E PAG G P P
Sbjct: 549 PGPPGFQGLPGPSGPAGEVGKPGERGLHG--EFGLPGPAGPRG--ERGPPGESGAAGPTG 604
Query: 131 RQAHRGGAQPPGHLGHWKDQP 151
RG + PPG G+ K +P
Sbjct: 605 PIGSRGPSGPPGPDGN-KGEP 624
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 34.3 bits (77), Expect = 0.15
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 71 PGPHLLTPMGAGSLSATGVGSPGPGG--FHGAMESKALAPAGTSGGLAWAPQRPQPTPKP 128
PGP L P + S S++ PGG HG S + + A LA PQ+PQP P+
Sbjct: 479 PGPSL-PPSSSSSSSSSSSAPQRPGGPTTHGDAPSSSSSLAEAQPPLAAPPQKPQPHPQL 537
Query: 129 HARQA 133
+ Q+
Sbjct: 538 NKSQS 542
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 34.3 bits (77), Expect = 0.15
Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 21/165 (12%)
Query: 92 PGPGGFHGAMESKALAPAGTSGGLAWAPQRPQPTPKPHARQAHRGGAQPPGHLGHWKDQP 151
P P + S+A +G GL ++ P P+P +Q + G+QPP G+W P
Sbjct: 1148 PPPSSKVSSHSSQATKDSGV--GLKYSASTPVRKPRP-GQQDGKEGSQPPPASGYWVYSP 1204
Query: 152 VR------FSSKKLVSWDTSERKRQFRRRMFSLANMRVKMPPRIPAANELIADKRYYSTM 205
+R F S+ S S+ + + + + PP +P ++ +
Sbjct: 1205 IRSGLHKLFPSRDADSGGDSQEESELDDQ---------EEPPFVPPPGYMMYTVLPDGSP 1255
Query: 206 SFQTSDHTRLPPPAA--GRPGSPTAAPLQGWHPCGVPLIPSGSPP 248
Q PPP RP +P + G P G P++ PP
Sbjct: 1256 VPQGMALYAPPPPLPNNSRPLTP-GTVVYGPPPAGAPMVYGPPPP 1299
>gi|88759346 GATA zinc finger domain containing 1 [Homo sapiens]
Length = 269
Score = 33.9 bits (76), Expect = 0.20
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 21/144 (14%)
Query: 80 GAGSLSATGVGSPGPGGFHGAMESKALAPAGTSGGLAWAPQRPQPTPKPHARQAHRGGAQ 139
GAGS +A G G G GGF A + A S G Q Q + HR A+
Sbjct: 43 GAGSGAAGGTGGSGGGGFGAATFASTSATPPQSNGGGGGKQSKQ--------EIHRRSAR 94
Query: 140 PPGHLGHWKDQPVRFSSKKLVSWDTSERKRQFRRRMFSLANMRVKMPPRIPAANELIADK 199
L + K + + KK+ K + RR +F L N +K P + + + A+
Sbjct: 95 ----LRNTKYKSAPAAEKKV------STKGKGRRHIFKLKN-PIKAPESV--STIITAES 141
Query: 200 RYYSTMSFQTSDHTRLPPPAAGRP 223
+Y + +Q D + G+P
Sbjct: 142 IFYKGVYYQIGDVVSVIDEQDGKP 165
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 33.9 bits (76), Expect = 0.20
Identities = 50/177 (28%), Positives = 64/177 (36%), Gaps = 37/177 (20%)
Query: 90 GSPGPGGFHGAMESKALAPAGTSGGLAWAPQR-----PQPTPKPHARQAHRGGAQPPGHL 144
G PGP G GA K A G+ P + P P P + H G P G
Sbjct: 1362 GPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSP 1421
Query: 145 GHWKDQPVRFSSKKLVSWDTSERKRQFRRRMFSLANMRVKMPPRIPAANELIADKRYYST 204
G V S +V++D E KR R+ + + + R+ Y S
Sbjct: 1422 GL---PGVPGSMGDMVNYD--EIKRFIRQEIIKMFDERMAY---------------YTSR 1461
Query: 205 MSFQTSDHTRLPPPAAGRPGSP--TAAPLQGWHPCGVPLIPSGSPPQGR----GVRG 255
M F A GRPG P AP + P G P +P +GR GVRG
Sbjct: 1462 MQFPME-----MAAAPGRPGPPGKDGAPGRPGAP-GSPGLPGQIGREGRQGLPGVRG 1512
>gi|148536864 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 1 [Homo sapiens]
Length = 531
Score = 33.9 bits (76), Expect = 0.20
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 57 LDLGGYSIVFPVVAPGPHLLTPMGAGSLSATGVGSPGPGGFHGAMESKALAPAGTSGGLA 116
L GG ++ + AP P P G G L + PGP G G + A P G +G A
Sbjct: 14 LSPGGGAVAAALGAPPP----PAGPGMLPGPALRGPGPAGGVGGPGAAAFRPMGPAGPAA 69
Query: 117 WAPQRPQPTP 126
QRP +P
Sbjct: 70 -QYQRPGMSP 78
>gi|148806874 hypothetical protein LOC54754 [Homo sapiens]
Length = 756
Score = 33.9 bits (76), Expect = 0.20
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 45 ETRSLTMVVSESLDLGGYSIVFPVVAPGPHLLTP--MGAGSLSATGVGSPGPGGFHGAME 102
E+ L SE +L G V H L P + + ++G+ SPG G GA++
Sbjct: 622 ESHGLAKGSSEETELPG----MVYVVGSHHRLRPWRLSQSPVPSSGLLSPGGRGPQGALQ 677
Query: 103 SKALAPAGTSGGLAWAPQRPQPTPKPHARQAHRGGAQPPGHLGHWKDQPVRFSSKKLVSW 162
S + G S P P+P +++ G+ P +R S ++ ++W
Sbjct: 678 SPSAQKRGLS---------PSPSPASKSKKRPLFGSPSPAEKTPHPGPGLRVSGEQSLAW 728
Query: 163 DTSERKRQFRRRMFSLANMRVK 184
+ +R+ LA+ R K
Sbjct: 729 GLGGPSQSQKRKGDPLASRRKK 750
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,619,268
Number of Sequences: 37866
Number of extensions: 966377
Number of successful extensions: 6094
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 231
Number of HSP's that attempted gapping in prelim test: 5561
Number of HSP's gapped (non-prelim): 733
length of query: 324
length of database: 18,247,518
effective HSP length: 102
effective length of query: 222
effective length of database: 14,385,186
effective search space: 3193511292
effective search space used: 3193511292
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.