Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239744653
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744653 PREDICTED: hypothetical protein XP_002343215 [Homo
sapiens]
(198 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744653 PREDICTED: hypothetical protein XP_002343215 [Homo ... 480 e-136
gi|239750349 PREDICTED: hypothetical protein XP_002347377 [Homo ... 438 e-123
gi|153945796 keratin associated protein 6-3 [Homo sapiens] 32 0.27
gi|4505487 occludin [Homo sapiens] 30 1.0
gi|21704283 junctophilin 3 [Homo sapiens] 30 1.8
gi|49472841 A kinase (PRKA) anchor protein 8-like [Homo sapiens] 30 1.8
gi|224593260 WBP2 N-terminal like [Homo sapiens] 29 2.3
gi|169218303 PREDICTED: hypothetical protein [Homo sapiens] 29 3.0
gi|31791030 keratin associated protein 19-1 [Homo sapiens] 29 3.0
gi|169213065 PREDICTED: similar to hCG1654128 [Homo sapiens] 28 6.7
gi|169213233 PREDICTED: similar to hCG1654128 [Homo sapiens] 28 6.7
gi|169212742 PREDICTED: similar to hCG1654128 [Homo sapiens] 28 6.7
gi|31791026 keratin associated protein 19-3 [Homo sapiens] 28 6.7
gi|31791014 keratin associated protein 20-2 [Homo sapiens] 28 6.7
gi|154759277 monocyte to macrophage differentiation-associated 2... 27 8.7
gi|154759275 monocyte to macrophage differentiation-associated 2... 27 8.7
gi|147902746 MEX3A protein [Homo sapiens] 27 8.7
>gi|239744653 PREDICTED: hypothetical protein XP_002343215 [Homo
sapiens]
Length = 198
Score = 480 bits (1236), Expect = e-136
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MGDCIVWDMGYEIWDMGYKIWDMGYGTWDMGHGIWDIGYGIWMWDMDMGCGIWIWDMGCG 60
MGDCIVWDMGYEIWDMGYKIWDMGYGTWDMGHGIWDIGYGIWMWDMDMGCGIWIWDMGCG
Sbjct: 1 MGDCIVWDMGYEIWDMGYKIWDMGYGTWDMGHGIWDIGYGIWMWDMDMGCGIWIWDMGCG 60
Query: 61 CGIWIWDMGYAIWDMDVGYGIWMWNMDMGYGLWMWDMDMGYGLRMWDMGYGIWDMDVGYG 120
CGIWIWDMGYAIWDMDVGYGIWMWNMDMGYGLWMWDMDMGYGLRMWDMGYGIWDMDVGYG
Sbjct: 61 CGIWIWDMGYAIWDMDVGYGIWMWNMDMGYGLWMWDMDMGYGLRMWDMGYGIWDMDVGYG 120
Query: 121 IWDMGYGLWMWDMDMGYGYGLWMWDMGYGIWDMGYGLWDMRYGPFPKHLLLFIPPKTKVT 180
IWDMGYGLWMWDMDMGYGYGLWMWDMGYGIWDMGYGLWDMRYGPFPKHLLLFIPPKTKVT
Sbjct: 121 IWDMGYGLWMWDMDMGYGYGLWMWDMGYGIWDMGYGLWDMRYGPFPKHLLLFIPPKTKVT 180
Query: 181 ITSMTDVSGTQPIGNDQI 198
ITSMTDVSGTQPIGNDQI
Sbjct: 181 ITSMTDVSGTQPIGNDQI 198
>gi|239750349 PREDICTED: hypothetical protein XP_002347377 [Homo
sapiens]
Length = 183
Score = 438 bits (1126), Expect = e-123
Identities = 183/198 (92%), Positives = 183/198 (92%), Gaps = 15/198 (7%)
Query: 1 MGDCIVWDMGYEIWDMGYKIWDMGYGTWDMGHGIWDIGYGIWMWDMDMGCGIWIWDMGCG 60
MGDCIVWDMGYEIWDMGYKIWDMGYGTWDMGHGIWDIGYGIWMWDMDMGCGIWIWDMGCG
Sbjct: 1 MGDCIVWDMGYEIWDMGYKIWDMGYGTWDMGHGIWDIGYGIWMWDMDMGCGIWIWDMGCG 60
Query: 61 CGIWIWDMGYAIWDMDVGYGIWMWNMDMGYGLWMWDMDMGYGLRMWDMGYGIWDMDVGYG 120
CGIWIWDMGYAIWDMDVGYGIWMWNMDMGYGLWMWDMDMGYGLRMWDMGYGIWDMDVGYG
Sbjct: 61 CGIWIWDMGYAIWDMDVGYGIWMWNMDMGYGLWMWDMDMGYGLRMWDMGYGIWDMDVGYG 120
Query: 121 IWDMGYGLWMWDMDMGYGYGLWMWDMGYGIWDMGYGLWDMRYGPFPKHLLLFIPPKTKVT 180
IWDMGYGLWMWDMDMGYGYGLWMWDMGYGIWDMGYGLWDMRYG VT
Sbjct: 121 IWDMGYGLWMWDMDMGYGYGLWMWDMGYGIWDMGYGLWDMRYG---------------VT 165
Query: 181 ITSMTDVSGTQPIGNDQI 198
ITSMTDVSGTQPIGNDQI
Sbjct: 166 ITSMTDVSGTQPIGNDQI 183
>gi|153945796 keratin associated protein 6-3 [Homo sapiens]
Length = 110
Score = 32.3 bits (72), Expect = 0.27
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 17 GYKIWDMGYGTWDMGHGIWDIGYGIWMWDMDMGCGIWIWDMGCGCG 62
GY GYG D G+G GYG + GCG D G GCG
Sbjct: 43 GYGGLGFGYGGLDCGYGGLGCGYGSF-----CGCGYRGLDCGYGCG 83
Score = 31.2 bits (69), Expect = 0.60
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 2 GDCIVWDMGYEIWDMGYKIWDMGYGTWDMGHGIWDIGYGIWMWDMDMGCGI-WIWDMGCG 60
G C GY GY D GYG G+G + G G D GCG ++ CG
Sbjct: 35 GGCGYGCCGYGGLGFGYGGLDCGYGGLGCGYGSF-CGCGYRGLDCGYGCGYGYVSHSFCG 93
Query: 61 CG 62
CG
Sbjct: 94 CG 95
Score = 30.0 bits (66), Expect = 1.3
Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 23/81 (28%)
Query: 78 GYGIWMWNMDMGYGLWMWDMDMGYGLRMWD-MGYGIWDMDVGYGIWDMGYGLWMWDMDMG 136
GYG + GYG GYG + +G+G +D GYG GYG + G
Sbjct: 26 GYG----GLGCGYG------GCGYGCCGYGGLGFGYGGLDCGYGGLGCGYGSF-----CG 70
Query: 137 YGY-GLWMWDMGYGIWDMGYG 156
GY GL D GYG GYG
Sbjct: 71 CGYRGL---DCGYG---CGYG 85
Score = 28.5 bits (62), Expect = 3.9
Identities = 23/60 (38%), Positives = 24/60 (40%), Gaps = 15/60 (25%)
Query: 109 GYGIWDMDVGYGIWDMGYGLWMWDMDMGYGYGLWMWD---MGYGIWDMGYGLWDMRYGPF 165
GYG GYG GYG G GYG + GYG D GYG YG F
Sbjct: 21 GYGC----CGYGGLGCGYG--------GCGYGCCGYGGLGFGYGGLDCGYGGLGCGYGSF 68
>gi|4505487 occludin [Homo sapiens]
Length = 522
Score = 30.4 bits (67), Expect = 1.0
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 7/46 (15%)
Query: 106 WDMGYG--IWDMDVGYGIWDMGYGLWMWDMDMGYGYGLWMWDMGYG 149
WD GYG + VGY G+G + GYGYG GYG
Sbjct: 89 WDRGYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYG-----YGYG 129
Score = 30.4 bits (67), Expect = 1.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 122 WDMGYGLWMWDMDMGYGYGLWMWDMGYGIWDMGYG 156
WD GYG + +GY YG G+G + GYG
Sbjct: 89 WDRGYGTSLLGGSVGYPYG----GSGFGSYGSGYG 119
>gi|21704283 junctophilin 3 [Homo sapiens]
Length = 748
Score = 29.6 bits (65), Expect = 1.8
Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 30/123 (24%)
Query: 7 WDMGYEIWDMGYKIWDMG---YGTWDMG--HGIWDIGYGIWMWDMDMGCGIWIWDMGCGC 61
W G+E+ +G W G GTW G HGI G W++ G W
Sbjct: 43 WSHGFEV--LGVYTWPSGNTYQGTWAQGKRHGIGLESKGKWVYK-----GEWTHGFKGRY 95
Query: 62 GI-----------WIWDMGYAIWDMDVGYGIWMWNMDMGY-GLWMWDMDMGYGLRMWDMG 109
G+ W G + GYG ++ Y G W+ M GYG+R +
Sbjct: 96 GVRECAGNGAKYEGTWSNG-----LQDGYGTETYSDGGTYQGQWVGGMRQGYGVRQ-SVP 149
Query: 110 YGI 112
YG+
Sbjct: 150 YGM 152
>gi|49472841 A kinase (PRKA) anchor protein 8-like [Homo sapiens]
Length = 646
Score = 29.6 bits (65), Expect = 1.8
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 107 DMGYGIWDMDVGYGIWDMGYGL-WMWDMDMGYGYGL---WMWDM 146
D GYG W+ G GYG + D YGYG+ W+M
Sbjct: 28 DYGYGTWNSGTNRGYEGYGYGYGYGQDNTTNYGYGMATSHSWEM 71
Score = 27.3 bits (59), Expect = 8.7
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 116 DVGYGIWDMGYGLWMWDMDMGYGYGL-WMWDMGYGI-----WDM 153
D GYG W+ G GYGYG + GYG+ W+M
Sbjct: 28 DYGYGTWNSGTNRGYEGYGYGYGYGQDNTTNYGYGMATSHSWEM 71
>gi|224593260 WBP2 N-terminal like [Homo sapiens]
Length = 309
Score = 29.3 bits (64), Expect = 2.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 10 GYEIWDMGYKIWDMGYGTWDMGHGIWDIGYG 40
GY +GY +GYGT +G+G +GYG
Sbjct: 230 GYGAPPLGYGAPPLGYGTPPLGYGAPPLGYG 260
Score = 27.3 bits (59), Expect = 8.7
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 117 VGYGIWDMGYGLWMWDMDMGYGYGLWMWDMGYGIWDMGYGLWDMRYGPFP 166
+GYG GYG +GYG +GYG +GYG + YG P
Sbjct: 222 LGYGAPPAGYGA----PPLGYGAP----PLGYGTPPLGYGAPPLGYGAPP 263
>gi|169218303 PREDICTED: hypothetical protein [Homo sapiens]
Length = 421
Score = 28.9 bits (63), Expect = 3.0
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 15/94 (15%)
Query: 47 DMGCGIWIWDMGCGCGIWIWDMGYAIWDM----DVGYGIWMWNMDMGYGLWMWD------ 96
D GC + W GCGC D +W + G+W+ +G D
Sbjct: 71 DPGCQMLAW--GCGCRSRPSDARLGVWVLFQAVGCSPGVWVLLQAVGCSPGGEDAIPCGQ 128
Query: 97 -MDMGYGL--RMWDMGYGIWDMDVGYGIWDMGYG 127
+ GYG R+ D G+W++ G +G G
Sbjct: 129 MLTWGYGFCSRLSDAHLGVWELFQDIGCSPVGVG 162
Score = 28.9 bits (63), Expect = 3.0
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 13/67 (19%)
Query: 36 DIGYGIWMWDMDMGC--GIWIWDMGCGCG-----------IWIWDMGYAIWDMDVGYGIW 82
D G+W+ +GC G+W+ GC + W G+ D G+W
Sbjct: 89 DARLGVWVLFQAVGCSPGVWVLLQAVGCSPGGEDAIPCGQMLTWGYGFCSRLSDAHLGVW 148
Query: 83 MWNMDMG 89
D+G
Sbjct: 149 ELFQDIG 155
>gi|31791030 keratin associated protein 19-1 [Homo sapiens]
Length = 90
Score = 28.9 bits (63), Expect = 3.0
Identities = 28/104 (26%), Positives = 35/104 (33%), Gaps = 24/104 (23%)
Query: 39 YGIWMWDMDMGCGIWI---WDMGCGCGIWIWDMGYAIWDMDVGYGIWMWNMDMGYGLWMW 95
YG + + CG + + GCGCG + GYG GYG
Sbjct: 4 YGSYYGGLGYSCGGFGGLGYGYGCGCG------SFCRRGSGCGYG--------GYGYGSG 49
Query: 96 DMDMGYGLRMWDMGYGIWDMDVGYGIWDMGYGLWMWDMDMGYGY 139
GYG GYG G GYG + GYG+
Sbjct: 50 FGSYGYGSGFGGYGYGS-------GFGGYGYGCCRPSYNGGYGF 86
Score = 28.5 bits (62), Expect = 3.9
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
Query: 109 GYGIWDMDVGYGIWDMGYGLWMWDMDMGYGYGLWMWDMGYGI----WDMGYG 156
GYG + G+G + G G GYGYG GYG ++ GYG
Sbjct: 40 GYGGYGYGSGFGSYGYGSGFG------GYGYGSGFGGYGYGCCRPSYNGGYG 85
>gi|169213065 PREDICTED: similar to hCG1654128 [Homo sapiens]
Length = 851
Score = 27.7 bits (60), Expect = 6.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 6 VWDMGYEIWDMGYKIWDMGYGTWDMGHGIWDIGYG 40
+W YE + M +W + YG+ M +W YG
Sbjct: 800 LWKSLYESFSMELPLWKILYGSLSMEVSLWKFLYG 834
>gi|169213233 PREDICTED: similar to hCG1654128 [Homo sapiens]
Length = 1070
Score = 27.7 bits (60), Expect = 6.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 6 VWDMGYEIWDMGYKIWDMGYGTWDMGHGIWDIGYG 40
+W YE + M +W + YG+ M +W YG
Sbjct: 1019 LWKSLYESFSMELPLWKILYGSLSMEVSLWKFLYG 1053
>gi|169212742 PREDICTED: similar to hCG1654128 [Homo sapiens]
Length = 1015
Score = 27.7 bits (60), Expect = 6.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 6 VWDMGYEIWDMGYKIWDMGYGTWDMGHGIWDIGYG 40
+W YE + M +W + YG+ M +W YG
Sbjct: 964 LWKSLYESFSMELPLWKILYGSLSMEVSLWKFLYG 998
>gi|31791026 keratin associated protein 19-3 [Homo sapiens]
Length = 81
Score = 27.7 bits (60), Expect = 6.7
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 101 YGLRMWDMGYGIWDMDVGYGIWDMGYGLWMWD---MDMGYGYGLWMWDMGYGIWDMGYGL 157
YG +GYG G+G GYG + G GYG + + G+G + G G
Sbjct: 4 YGSYYGGLGYGCG----GFGGLGYGYGCGCGSFRRLGSGCGYGGYGYGSGFGGYGYGSGF 59
Query: 158 WDMRYG 163
YG
Sbjct: 60 GGYGYG 65
>gi|31791014 keratin associated protein 20-2 [Homo sapiens]
Length = 65
Score = 27.7 bits (60), Expect = 6.7
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 118 GYGIWDMGYGLWMWDMDMGYGYGLWMWDMGYGIWDMGYG 156
GYG+ GYG GYG+G GYG GYG
Sbjct: 14 GYGVLGGGYGC-----GCGYGHGYGGLGCGYGRGYGGYG 47
>gi|154759277 monocyte to macrophage differentiation-associated 2
isoform 1 [Homo sapiens]
Length = 270
Score = 27.3 bits (59), Expect = 8.7
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 111 GIWDMDVGYGIWDMGYGLWMWDMDMGYGYGLWMWDMGYGIWDMGYGLWDMRYGP 164
GIW++ G + +G + D + + + +W + +G Y +W Y P
Sbjct: 208 GIWELVTGGVFYCLGMVFFKSDGRIPFAHAIWHLFVAFGAGTHYYAIWRYLYLP 261
>gi|154759275 monocyte to macrophage differentiation-associated 2
isoform 2 [Homo sapiens]
Length = 246
Score = 27.3 bits (59), Expect = 8.7
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 111 GIWDMDVGYGIWDMGYGLWMWDMDMGYGYGLWMWDMGYGIWDMGYGLWDMRYGP 164
GIW++ G + +G + D + + + +W + +G Y +W Y P
Sbjct: 184 GIWELVTGGVFYCLGMVFFKSDGRIPFAHAIWHLFVAFGAGTHYYAIWRYLYLP 237
>gi|147902746 MEX3A protein [Homo sapiens]
Length = 520
Score = 27.3 bits (59), Expect = 8.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 98 DMGYGLRMWDMGYGIWDMDVGYGIWDMGYGLW 129
D GYG ++ GYG+ DV YG+ + LW
Sbjct: 362 DFGYGGYLFP-GYGVGKQDVYYGVAETSPPLW 392
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.151 0.622
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,890,101
Number of Sequences: 37866
Number of extensions: 488428
Number of successful extensions: 1236
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 73
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.