Guide to the Human Genome
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Name: PNPLA6 Sequence: fasta or formatted (1327aa) NCBI GI: 116256487
Description:

patatin-like phospholipase domain containing 6

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7        102           2
 C cysteine            1.9         25           1
 D aspartate           5.4         71           1
 E glutamate           6.0         79           3
 F phenylalanine       2.9         38           1
 G glycine             7.7        102           4
 H histidine           2.0         27           2
 I isoleucine          4.1         55           2
 K lysine              3.6         48           2
 L leucine            11.2        148           3
 M methionine          2.3         30           1
 N asparagine          1.7         22           2
 P proline             6.6         87           3
 Q glutamine           4.3         57           2
 R arginine            8.0        106           2
 S serine              7.8        104           3
 T threonine           5.7         75           2
 V valine              7.8        103           3
 W tryptophan          1.1         14           2
 Y tyrosine            2.6         34           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   patatin-like phospholipase domain containing 6 [Hom... 
PNPLA7                0.583   patatin-like phospholipase domain containing 7 isof...
PNPLA7                0.582   patatin-like phospholipase domain containing 7 isof...
PRKAR1B               0.009   protein kinase, cAMP-dependent, regulatory, type I, ...
PRKAR1A               0.009   cAMP-dependent protein kinase, regulatory subunit al...
PRKAR1A               0.009   cAMP-dependent protein kinase, regulatory subunit al...
PRKAR1A               0.009   cAMP-dependent protein kinase, regulatory subunit alp...
RAPGEF4               0.008   Rap guanine nucleotide exchange factor (GEF) 4 isof...
RAPGEF4               0.008   Rap guanine nucleotide exchange factor (GEF) 4 isof...
PRKAR2B               0.008   cAMP-dependent protein kinase, regulatory subunit be...
GNAS                  0.008   GNAS complex locus alex 
RAPGEF3               0.008   Rap guanine nucleotide exchange factor 3 isoform b ...
RAPGEF3               0.008   Rap guanine nucleotide exchange factor 3 isoform b [...
RAPGEF3               0.008   Rap guanine nucleotide exchange factor 3 isoform a ...
CNGA2                 0.006   cyclic nucleotide gated channel alpha 2 
OGFR                  0.006   opioid growth factor receptor 
CNGA1                 0.006   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CNGA1                 0.006   cyclic nucleotide gated channel alpha 1 isoform 2 [H...
PRKAR2A               0.006   cAMP-dependent protein kinase, regulatory subunit alp...
COL4A2                0.006   alpha 2 type IV collagen preproprotein 
CNGA3                 0.006   cyclic nucleotide gated channel alpha 3 isoform 2 [...
CNGA3                 0.006   cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...
TPRX1                 0.006   tetra-peptide repeat homeobox 
CNGB1                 0.006   cyclic nucleotide gated channel beta 1 isoform a [H...
BRSK2                 0.005   BR serine/threonine kinase 2 
HCN2                  0.005   hyperpolarization activated cyclic nucleotide-gated...
INSM2                 0.005   insulinoma-associated protein IA-6 
RTN4                  0.005   reticulon 4 isoform A 
PRR22                 0.005   proline rich 22 isoform 1 
PRR22                 0.005   proline rich 22 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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