Search of human proteins with 116256479

Search of human proteins with 116256479

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116256479 RWD domain containing 4A [Homo sapiens]
         (188 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116256479 RWD domain containing 4A [Homo sapiens]                  377   e-105
gi|55953123 RWD domain containing 1 isoform a [Homo sapiens]           47   7e-06
gi|9910430 matrix, extracellular phosphoglycoprotein with ASARM ...    33   0.11 
gi|13236553 nucleolar protein 12 [Homo sapiens]                        33   0.19 
gi|119120874 formin-like 3 isoform 1 [Homo sapiens]                    32   0.32 
gi|104526627 triadin [Homo sapiens]                                    32   0.42 
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [...    30   1.6  
gi|71143141 cyclic nucleotide gated channel alpha 1 isoform 2 [H...    30   1.6  
gi|7656983 TP53-target gene 5 protein [Homo sapiens]                   30   1.6  
gi|223555917 metadherin [Homo sapiens]                                 29   2.1  
gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho...    29   2.1  
gi|11496279 male germ cell-associated kinase [Homo sapiens]            29   2.1  
gi|88759339 aster-associated protein [Homo sapiens]                    29   2.1  
gi|63079683 zinc fingers and homeoboxes 1 [Homo sapiens]               29   2.1  
gi|63079680 zinc fingers and homeoboxes 1 [Homo sapiens]               29   2.1  
gi|4758648 kinesin family member 5B [Homo sapiens]                     29   2.7  
gi|27477122 intestinal cell kinase [Homo sapiens]                      29   2.7  
gi|7662388 intestinal cell kinase [Homo sapiens]                       29   2.7  
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap...    29   2.7  
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap...    29   2.7  
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]         29   2.7  
gi|153792012 DNA polymerase zeta [Homo sapiens]                        28   3.6  
gi|9256586 protocadherin alpha 3 isoform 1 precursor [Homo sapiens]    28   3.6  
gi|14165402 protocadherin alpha 1 isoform 3 precursor [Homo sapi...    28   3.6  
gi|14165383 protocadherin alpha 10 isoform 3 precursor [Homo sap...    28   3.6  
gi|14165425 protocadherin alpha 9 isoform 1 precursor [Homo sapi...    28   3.6  
gi|14165394 protocadherin alpha 6 isoform 3 precursor [Homo sapi...    28   3.6  
gi|9256582 protocadherin alpha 1 isoform 1 precursor [Homo sapiens]    28   3.6  
gi|9256584 protocadherin alpha 2 isoform 1 precursor [Homo sapiens]    28   3.6  
gi|9256590 protocadherin alpha 5 isoform 1 precursor [Homo sapiens]    28   3.6  

>gi|116256479 RWD domain containing 4A [Homo sapiens]
          Length = 188

 Score =  377 bits (968), Expect = e-105
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 1   MSANEDQEMELEALRSIYEGDESFRELSPVSFQYRIGENGDPKAFLIEISWTETYPQTPP 60
           MSANEDQEMELEALRSIYEGDESFRELSPVSFQYRIGENGDPKAFLIEISWTETYPQTPP
Sbjct: 1   MSANEDQEMELEALRSIYEGDESFRELSPVSFQYRIGENGDPKAFLIEISWTETYPQTPP 60

Query: 61  ILSMNAFFNNTISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINS 120
           ILSMNAFFNNTISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINS
Sbjct: 61  ILSMNAFFNNTISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINS 120

Query: 121 ATSISNIISIETPNTAPSSKKKDKKEQLSKAQKRKLADKTDHKGELPRGWNWVDVVKHLS 180
           ATSISNIISIETPNTAPSSKKKDKKEQLSKAQKRKLADKTDHKGELPRGWNWVDVVKHLS
Sbjct: 121 ATSISNIISIETPNTAPSSKKKDKKEQLSKAQKRKLADKTDHKGELPRGWNWVDVVKHLS 180

Query: 181 KTGSKDDE 188
           KTGSKDDE
Sbjct: 181 KTGSKDDE 188


>gi|55953123 RWD domain containing 1 isoform a [Homo sapiens]
          Length = 243

 Score = 47.4 bits (111), Expect = 7e-06
 Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 24/154 (15%)

Query: 5   EDQEMELEALRSIYEGDESFRELSPVSFQYRI----GENGDPKAFLIEISWTETYPQTPP 60
           E+Q  ELEAL SIY    +    +P SF   +    GEN +     ++ +++E YP   P
Sbjct: 6   EEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAP 65

Query: 61  ILSMNAFFNNTISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINS 120
           +  +  F    +       IL  L    E NLG  M +TL    ++   +          
Sbjct: 66  LYEI--FSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEI--------- 114

Query: 121 ATSISNIISIETPNTAPSSKKKDKKEQLSKAQKR 154
                    ++   T    +KK K+++  +A+K+
Sbjct: 115 ---------VDQIKTRREEEKKQKEKEAEEAEKQ 139


>gi|9910430 matrix, extracellular phosphoglycoprotein with ASARM
           motif (bone) [Homo sapiens]
          Length = 525

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 110 QFMENHNPINSATSISNIISIETPNTAPSSKKKDKKEQLSKAQKRKLADKTDHKGELPRG 169
           + +   N  N+  ++ NII          SK K K ++ S+AQK  +  K+ H+ +    
Sbjct: 162 KLLGEENKENTPRNVLNIIPASMNYAKAHSKDKKKPQRDSQAQKSPVKSKSTHRIQ---- 217

Query: 170 WNWVDVVKHLSK 181
            + +D +KHLSK
Sbjct: 218 -HNIDYLKHLSK 228


>gi|13236553 nucleolar protein 12 [Homo sapiens]
          Length = 213

 Score = 32.7 bits (73), Expect = 0.19
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 133 PNTAPSSKKKDKKEQLSKAQKRKLADKTDHKGE 165
           P  A  SKK  +  + SKAQ+R+L  K  H GE
Sbjct: 181 PRRAQDSKKPPRAPRTSKAQRRRLTGKARHSGE 213


>gi|119120874 formin-like 3 isoform 1 [Homo sapiens]
          Length = 1027

 Score = 32.0 bits (71), Expect = 0.32
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 23  SFRELSPVSFQYRIGENGDPKAFLIEISWTETYPQTPPILSMNAFFNNTISSAVKQSIL 81
           SF + S V F +   E+GD  AF    SW+ +     P  +++A F N+++ + +QS+L
Sbjct: 144 SFAQCS-VMFDFEGLESGDDGAFDKLRSWSRSIEDLQPPSALSAPFTNSLARSARQSVL 201


>gi|104526627 triadin [Homo sapiens]
          Length = 729

 Score = 31.6 bits (70), Expect = 0.42
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 85  QEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISNIISIETPNTAPSSKKKDK 144
           QE  E  + T +T+   +  +  KE+  E   P   AT    I   E P T   +K++ K
Sbjct: 151 QEKPERKIQTKVTH---KEKEKGKEKVREKEKPEKKATHKEKIEKKEKPETKTLAKEQKK 207

Query: 145 KEQLSKAQKRKLADKTDHKGELPRGWNWVDVVKHLSKTGSKDDE 188
            +   K++++   +    K E  +       VK + KT SK  E
Sbjct: 208 AKTAEKSEEKTKKEVKGGKQEKVK--QTAAKVKEVQKTPSKPKE 249


>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
           [Homo sapiens]
          Length = 759

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 101 FEYAKDNKEQFMENHNPINSATSISNIISIETPNTAPSSKKKDKKEQLSKAQKRKLADKT 160
           F Y    K    +    +  A ++ N+ +    +  P  KKK KKE+ SK+      DK 
Sbjct: 135 FSYKSLRKGGPSQREQYLPGAIALFNVNNSSNKDQEPEEKKKKKKEKKSKSD-----DKN 189

Query: 161 DHKGELPRGWNWVDVVKHLSKTGSKD 186
           ++K +  +     D  K   +  SKD
Sbjct: 190 ENKNDPEKKKKKKDKEKKKKEEKSKD 215


>gi|71143141 cyclic nucleotide gated channel alpha 1 isoform 2 [Homo
           sapiens]
          Length = 690

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 101 FEYAKDNKEQFMENHNPINSATSISNIISIETPNTAPSSKKKDKKEQLSKAQKRKLADKT 160
           F Y    K    +    +  A ++ N+ +    +  P  KKK KKE+ SK+      DK 
Sbjct: 66  FSYKSLRKGGPSQREQYLPGAIALFNVNNSSNKDQEPEEKKKKKKEKKSKSD-----DKN 120

Query: 161 DHKGELPRGWNWVDVVKHLSKTGSKD 186
           ++K +  +     D  K   +  SKD
Sbjct: 121 ENKNDPEKKKKKKDKEKKKKEEKSKD 146


>gi|7656983 TP53-target gene 5 protein [Homo sapiens]
          Length = 290

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 136 APSSKKKDKKEQLSKAQKRKLADKTD 161
           +PS+KK+ K  ++SK Q  KL D+T+
Sbjct: 2   SPSAKKRPKNSRVSKMQDEKLRDETE 27


>gi|223555917 metadherin [Homo sapiens]
          Length = 582

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 102 EYAKDNKEQFMENHNPINSATSISNIISIETPN--TAPSSKKKDKKEQLSKAQKRKLADK 159
           E  K N+++  E   P      ++   ++ TP   TA    + DKK + SK  K+K   K
Sbjct: 113 EQKKKNRKKLSEKPKPNGRTVEVAEGEAVRTPQSVTAKQPPEIDKKNEKSKKNKKK--SK 170

Query: 160 TDHK 163
           +D K
Sbjct: 171 SDAK 174


>gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Homo
           sapiens]
          Length = 1632

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 41  DPKAFLIEISWTETYPQTPPILSMNAFFNNTISSA-VKQSILAKLQEAVEANLGTAMTYT 99
           DP A   +++     P   P ++  +    TI+S   K     K QE  E          
Sbjct: 152 DPPASASQVTGIRAEPSPSPRITRKSTRQTTITSHFAKGPAKRKPQEESERAKSD----- 206

Query: 100 LFEYAKDNKEQFMENHNPINSATSISNIISIETPNTAPSSKKKDKKEQLSKAQKRKLADK 159
             E  K+  +   E    + S   ++  +  E P  A S  + +K+E+  + ++++L  +
Sbjct: 207 --ESIKEEDKDQDEKRRRVTSRERVARPLPAEEPERAKSGTRTEKEEERDEKEEKRLRSQ 264

Query: 160 T 160
           T
Sbjct: 265 T 265


>gi|11496279 male germ cell-associated kinase [Homo sapiens]
          Length = 623

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 83  KLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISNII 128
           KL+E +  N      Y +FEY K+N  Q M++ N +   + I NI+
Sbjct: 64  KLKEVIREN---DHLYFIFEYMKENLYQLMKDRNKLFPESVIRNIM 106


>gi|88759339 aster-associated protein [Homo sapiens]
          Length = 647

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 105 KDNKEQFMENHNPINSATSISNIISIETPNTAPSSKKK------DKKEQLSKAQKRKLAD 158
           KD  E+  ENHN + S  +  N  S +   TA    K+      D +E+ +KA+     D
Sbjct: 267 KDPNEEITENHNSLKSDENKENSFSADHVTTAVEKSKESQVTADDLEEEKAKAELIMDDD 326

Query: 159 KT 160
           +T
Sbjct: 327 RT 328


>gi|63079683 zinc fingers and homeoboxes 1 [Homo sapiens]
          Length = 873

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 30/132 (22%)

Query: 40  GDPKAFLIEISWTETYPQTPPILSMNAFFNNTISSAVKQSILAKLQEAVEANLGTAMTYT 99
           G P   L +++ T T P T PI         T++    Q+ + K Q  V A   TA T  
Sbjct: 392 GQPGLVLTQVAGTNTLPVTAPIAL-------TVAGVPSQNNIQKSQ--VPAAQPTAET-- 440

Query: 100 LFEYAKDNKEQFMENHNPINSATSISNIISIETPNTAPSS---KKKDKKEQLSKAQKRKL 156
                            P  +A   S  +  ET    P S   + K  KEQL++ +   L
Sbjct: 441 ----------------KPATAAVPTSQSVKHETALVNPDSFGIRAKKTKEQLAELKVSYL 484

Query: 157 ADKTDHKGELPR 168
            ++  H  E+ R
Sbjct: 485 KNQFPHDSEIIR 496


>gi|63079680 zinc fingers and homeoboxes 1 [Homo sapiens]
          Length = 873

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 30/132 (22%)

Query: 40  GDPKAFLIEISWTETYPQTPPILSMNAFFNNTISSAVKQSILAKLQEAVEANLGTAMTYT 99
           G P   L +++ T T P T PI         T++    Q+ + K Q  V A   TA T  
Sbjct: 392 GQPGLVLTQVAGTNTLPVTAPIAL-------TVAGVPSQNNIQKSQ--VPAAQPTAET-- 440

Query: 100 LFEYAKDNKEQFMENHNPINSATSISNIISIETPNTAPSS---KKKDKKEQLSKAQKRKL 156
                            P  +A   S  +  ET    P S   + K  KEQL++ +   L
Sbjct: 441 ----------------KPATAAVPTSQSVKHETALVNPDSFGIRAKKTKEQLAELKVSYL 484

Query: 157 ADKTDHKGELPR 168
            ++  H  E+ R
Sbjct: 485 KNQFPHDSEIIR 496


>gi|4758648 kinesin family member 5B [Homo sapiens]
          Length = 963

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 7/55 (12%)

Query: 121 ATSISNIISIETPNTAPSSKKKDK-------KEQLSKAQKRKLADKTDHKGELPR 168
           AT +     I++ +T  S+ +K K        EQL+K  K+ + D  D + ELP+
Sbjct: 808 ATRVKKSAEIDSDDTGGSAAQKQKISFLENNLEQLTKVHKQLVRDNADLRCELPK 862


>gi|27477122 intestinal cell kinase [Homo sapiens]
          Length = 632

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 81  LAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISNII 128
           + KL+E +  N      Y +FEY K+N  Q ++  N +   ++I NI+
Sbjct: 62  VVKLKEVIREN---DHLYFIFEYMKENLYQLIKERNKLFPESAIRNIM 106


>gi|7662388 intestinal cell kinase [Homo sapiens]
          Length = 632

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 81  LAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISNII 128
           + KL+E +  N      Y +FEY K+N  Q ++  N +   ++I NI+
Sbjct: 62  VVKLKEVIREN---DHLYFIFEYMKENLYQLIKERNKLFPESAIRNIM 106


>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
          Length = 1758

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 4/123 (3%)

Query: 69   NNTISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISNII 128
            +  IS  +K  I+ K +E+++      +  +  +           +H+P  S T  S+  
Sbjct: 1624 SGNISKDLKDKIVEKAKESLDTAAVVQVGISRNQSHSSPSVSPSRSHSPSGSQTR-SHSS 1682

Query: 129  SIETPNTAPSSKKKDKKEQLSKAQKRKLADKTDHKG---ELPRGWNWVDVVKHLSKTGSK 185
            S  +  +  S KKK KKE+    + +K      H G   EL +        K   K   K
Sbjct: 1683 SASSAESQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEVELEKSQKHKHKKKKSKKNKDK 1742

Query: 186  DDE 188
            + E
Sbjct: 1743 EKE 1745


>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
          Length = 1792

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 4/123 (3%)

Query: 69   NNTISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISNII 128
            +  IS  +K  I+ K +E+++      +  +  +           +H+P  S T  S+  
Sbjct: 1658 SGNISKDLKDKIVEKAKESLDTAAVVQVGISRNQSHSSPSVSPSRSHSPSGSQTR-SHSS 1716

Query: 129  SIETPNTAPSSKKKDKKEQLSKAQKRKLADKTDHKG---ELPRGWNWVDVVKHLSKTGSK 185
            S  +  +  S KKK KKE+    + +K      H G   EL +        K   K   K
Sbjct: 1717 SASSAESQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEVELEKSQKHKHKKKKSKKNKDK 1776

Query: 186  DDE 188
            + E
Sbjct: 1777 EKE 1779


>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
          Length = 953

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 7/121 (5%)

Query: 40  GDPKAFLIEISWTETYPQTPPILSMNAFFNNTISSAVKQSILAKLQEAVEANLGTAMTYT 99
           GDP+    +     T P+   +    +   ++ S +  +S    L  +  +++ +A + +
Sbjct: 663 GDPREARRKERPARTPPRRRTLSGSGSGSGSSYSGSSSRS--RSLSVSSVSSVSSATSSS 720

Query: 100 LFEYAKDNKEQFMENHNPINSATSISNIISIETPNTAPSSKKKDKKEQLSKAQKRKLADK 159
              ++ D+++ + +  +P++SA+S S       P      K K KKE   K +KRK    
Sbjct: 721 SSAHSVDSEDMYADLASPVSSASSRS-----PAPAQTRKEKGKSKKEDGVKEEKRKRDSS 775

Query: 160 T 160
           T
Sbjct: 776 T 776


>gi|153792012 DNA polymerase zeta [Homo sapiens]
          Length = 3130

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 8/89 (8%)

Query: 78   QSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMEN------HNPINSATSISNIISIE 131
            QS LA L+E ++     A      +    NK Q  +N      HN  N  T   ++ S  
Sbjct: 1524 QSGLAVLKELLQKRQQKAQNANTTQDPLSNKHQPNKNISGSLEHNKANKRTR--SVTSPR 1581

Query: 132  TPNTAPSSKKKDKKEQLSKAQKRKLADKT 160
             P T  S+K+K+K  +L K     L + +
Sbjct: 1582 KPRTPRSTKQKEKIPKLLKVDSLNLQNSS 1610


>gi|9256586 protocadherin alpha 3 isoform 1 precursor [Homo sapiens]
          Length = 950

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 71  TISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISN-IIS 129
           T+SSA  +    ++   V A  G       F+Y   N +Q      P       S  IIS
Sbjct: 841 TVSSATPEPEAGEVSPPVGA--GVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIIS 898

Query: 130 IETPNTAPSSKKKD-----KKEQLSKAQKRKLADKTDHKGE 165
           I    T     K D     KKE+  K +K+K  +KT  K E
Sbjct: 899 IRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKE 939


>gi|14165402 protocadherin alpha 1 isoform 3 precursor [Homo
           sapiens]
          Length = 686

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 71  TISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISN-IIS 129
           T+SSA  +    ++   V A  G       F+Y   N +Q      P       S  IIS
Sbjct: 577 TVSSATPEPEAGEVSPPVGA--GVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIIS 634

Query: 130 IETPNTAPSSKKKD-----KKEQLSKAQKRKLADKTDHKGE 165
           I    T     K D     KKE+  K +K+K  +KT  K E
Sbjct: 635 IRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKE 675


>gi|14165383 protocadherin alpha 10 isoform 3 precursor [Homo
           sapiens]
          Length = 685

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 71  TISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISN-IIS 129
           T+SSA  +    ++   V A  G       F+Y   N +Q      P       S  IIS
Sbjct: 576 TVSSATPEPEAGEVSPPVGA--GVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIIS 633

Query: 130 IETPNTAPSSKKKD-----KKEQLSKAQKRKLADKTDHKGE 165
           I    T     K D     KKE+  K +K+K  +KT  K E
Sbjct: 634 IRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKE 674


>gi|14165425 protocadherin alpha 9 isoform 1 precursor [Homo
           sapiens]
          Length = 950

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 71  TISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISN-IIS 129
           T+SSA  +    ++   V A  G       F+Y   N +Q      P       S  IIS
Sbjct: 841 TVSSATPEPEAGEVSPPVGA--GVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIIS 898

Query: 130 IETPNTAPSSKKKD-----KKEQLSKAQKRKLADKTDHKGE 165
           I    T     K D     KKE+  K +K+K  +KT  K E
Sbjct: 899 IRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKE 939


>gi|14165394 protocadherin alpha 6 isoform 3 precursor [Homo
           sapiens]
          Length = 686

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 71  TISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISN-IIS 129
           T+SSA  +    ++   V A  G       F+Y   N +Q      P       S  IIS
Sbjct: 577 TVSSATPEPEAGEVSPPVGA--GVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIIS 634

Query: 130 IETPNTAPSSKKKD-----KKEQLSKAQKRKLADKTDHKGE 165
           I    T     K D     KKE+  K +K+K  +KT  K E
Sbjct: 635 IRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKE 675


>gi|9256582 protocadherin alpha 1 isoform 1 precursor [Homo sapiens]
          Length = 950

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 71  TISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISN-IIS 129
           T+SSA  +    ++   V A  G       F+Y   N +Q      P       S  IIS
Sbjct: 841 TVSSATPEPEAGEVSPPVGA--GVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIIS 898

Query: 130 IETPNTAPSSKKKD-----KKEQLSKAQKRKLADKTDHKGE 165
           I    T     K D     KKE+  K +K+K  +KT  K E
Sbjct: 899 IRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKE 939


>gi|9256584 protocadherin alpha 2 isoform 1 precursor [Homo sapiens]
          Length = 948

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 71  TISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISN-IIS 129
           T+SSA  +    ++   V A  G       F+Y   N +Q      P       S  IIS
Sbjct: 839 TVSSATPEPEAGEVSPPVGA--GVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIIS 896

Query: 130 IETPNTAPSSKKKD-----KKEQLSKAQKRKLADKTDHKGE 165
           I    T     K D     KKE+  K +K+K  +KT  K E
Sbjct: 897 IRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKE 937


>gi|9256590 protocadherin alpha 5 isoform 1 precursor [Homo sapiens]
          Length = 936

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 71  TISSAVKQSILAKLQEAVEANLGTAMTYTLFEYAKDNKEQFMENHNPINSATSISN-IIS 129
           T+SSA  +    ++   V A  G       F+Y   N +Q      P       S  IIS
Sbjct: 827 TVSSATPEPEAGEVSPPVGA--GVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIIS 884

Query: 130 IETPNTAPSSKKKD-----KKEQLSKAQKRKLADKTDHKGE 165
           I    T     K D     KKE+  K +K+K  +KT  K E
Sbjct: 885 IRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKE 925


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.308    0.125    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,935,572
Number of Sequences: 37866
Number of extensions: 280195
Number of successful extensions: 1173
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1116
Number of HSP's gapped (non-prelim): 78
length of query: 188
length of database: 18,247,518
effective HSP length: 96
effective length of query: 92
effective length of database: 14,612,382
effective search space: 1344339144
effective search space used: 1344339144
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.