Guide to the Human Genome
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Name: REV3L Sequence: fasta or formatted (3130aa) NCBI GI: 153792012
Description:

DNA polymerase zeta

Referenced in:

DNA Polymerases
Spindle, M phase, and Meiosis

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8        151           3
 C cysteine            1.9         60           1
 D aspartate           5.0        158           4
 E glutamate           6.7        211           2
 F phenylalanine       3.7        116           2
 G glycine             4.2        132           2
 H histidine           2.4         74           2
 I isoleucine          5.0        155           3
 K lysine              7.7        242           3
 L leucine             9.0        282           3
 M methionine          2.1         66           2
 N asparagine          5.5        172           2
 P proline             6.2        195           2
 Q glutamine           5.1        160           3
 R arginine            5.3        165           3
 S serine             11.1        346           3
 T threonine           5.7        179           2
 V valine              5.2        162           2
 W tryptophan          0.6         19           1
 Y tyrosine            2.7         85           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DNA polymerase zeta 
POLD1                 0.047   DNA-directed DNA polymerase delta 1 
POLA1                 0.019   DNA-directed DNA polymerase alpha 1 
KIAA2022              0.017   hypothetical protein LOC340533 
AHDC1                 0.006   AT hook, DNA binding motif, containing 1 
NKTR                  0.004   natural killer-tumor recognition sequence 
DSPP                  0.004   dentin sialophosphoprotein preproprotein 
ATXN2                 0.003   ataxin 2 
MLL2                  0.003   myeloid/lymphoid or mixed-lineage leukemia 2 
LOC647546             0.003   PREDICTED: hypothetical protein 
SEMG2                 0.003   semenogelin II precursor 
ARFGAP3               0.003   ADP-ribosylation factor GTPase activating protein 3...
CCDC150               0.003   coiled-coil domain containing 150 
BOD1L                 0.002   biorientation of chromosomes in cell division 1-like...
MYST4                 0.002   MYST histone acetyltransferase (monocytic leukemia)...
HECTD1                0.002   HECT domain containing 1 
TRDN                  0.002   triadin 
NKAPL                 0.002   NFKB activating protein-like 
MAGEC1                0.002   melanoma antigen family C, 1 
TTC28                 0.002   tetratricopeptide repeat domain 28 
MYCBP2                0.002   MYC binding protein 2 
ANKRD12               0.002   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.002   ankyrin repeat domain 12 isoform 1 
BAZ2B                 0.002   bromodomain adjacent to zinc finger domain, 2B [Homo...
TNK2                  0.002   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.002   tyrosine kinase, non-receptor, 2 isoform 2 
LOC100130716          0.002   PREDICTED: similar to mucin 11 
PCLO                  0.002   piccolo isoform 2 
PCLO                  0.002   piccolo isoform 1 
IGSF10                0.002   immunoglobulin superfamily, member 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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