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Search of human proteins with 239741731
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
(316 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 672 0.0
gi|239755710 PREDICTED: hypothetical protein [Homo sapiens] 487 e-138
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens] 201 5e-52
gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo ... 96 3e-20
gi|110832843 TBP-associated factor 4 [Homo sapiens] 65 6e-11
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 62 7e-10
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 60 2e-09
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 58 1e-08
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 58 1e-08
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 58 1e-08
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 58 1e-08
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 57 3e-08
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 56 4e-08
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 55 6e-08
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 55 1e-07
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 54 2e-07
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 54 2e-07
gi|7706501 WW domain binding protein 11 [Homo sapiens] 54 2e-07
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 54 2e-07
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 54 2e-07
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 53 3e-07
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 53 4e-07
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 53 4e-07
gi|110431370 espin [Homo sapiens] 52 5e-07
gi|40353727 synaptopodin isoform A [Homo sapiens] 52 7e-07
gi|150170670 piccolo isoform 2 [Homo sapiens] 52 7e-07
gi|150378539 piccolo isoform 1 [Homo sapiens] 52 7e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 52 9e-07
gi|134244285 Notch homolog 3 [Homo sapiens] 52 9e-07
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 52 9e-07
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 672 bits (1733), Expect = 0.0
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 MEEFREGATFLTPYKVLATCQAPFPYIVSVQLPTLDKQETLVAEERRGWKQRGRNGAPGT 60
MEEFREGATFLTPYKVLATCQAPFPYIVSVQLPTLDKQETLVAEERRGWKQRGRNGAPGT
Sbjct: 1 MEEFREGATFLTPYKVLATCQAPFPYIVSVQLPTLDKQETLVAEERRGWKQRGRNGAPGT 60
Query: 61 QRGVREVGSPTRDQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQALA 120
QRGVREVGSPTRDQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQALA
Sbjct: 61 QRGVREVGSPTRDQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQALA 120
Query: 121 SLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTV 180
SLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTV
Sbjct: 121 SLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTV 180
Query: 181 PGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPP 240
PGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPP
Sbjct: 181 PGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPP 240
Query: 241 PAPPGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRGPGHGTHAHSELPTCTRLPSVVFR 300
PAPPGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRGPGHGTHAHSELPTCTRLPSVVFR
Sbjct: 241 PAPPGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRGPGHGTHAHSELPTCTRLPSVVFR 300
Query: 301 ASGRPYPCFLLCRPSS 316
ASGRPYPCFLLCRPSS
Sbjct: 301 ASGRPYPCFLLCRPSS 316
>gi|239755710 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 487 bits (1254), Expect = e-138
Identities = 231/243 (95%), Positives = 236/243 (97%)
Query: 1 MEEFREGATFLTPYKVLATCQAPFPYIVSVQLPTLDKQETLVAEERRGWKQRGRNGAPGT 60
MEEFREGATFLTPYKVLATCQAPFPY+VSVQLPTLDKQETLVAEE+RGWKQRGRNGAPGT
Sbjct: 1 MEEFREGATFLTPYKVLATCQAPFPYLVSVQLPTLDKQETLVAEEKRGWKQRGRNGAPGT 60
Query: 61 QRGVREVGSPTRDQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQALA 120
QRGVREVGSPTRDQE+RAGSSCGRAARGFPEPGRGGKTQ+WGGGTGTPQSPGPCAPQALA
Sbjct: 61 QRGVREVGSPTRDQELRAGSSCGRAARGFPEPGRGGKTQKWGGGTGTPQSPGPCAPQALA 120
Query: 121 SLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTV 180
SLLGPGKAGCR RLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTV
Sbjct: 121 SLLGPGKAGCRTRLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTV 180
Query: 181 PGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPP 240
PGLPPASLQPLR+PY APPGPHDPTSRGPGRLLT EPPSRKLPPPLP CRSRWVLAPPP
Sbjct: 181 PGLPPASLQPLRLPYLAPPGPHDPTSRGPGRLLTCEPPSRKLPPPLPPCRSRWVLAPPPT 240
Query: 241 PAP 243
P
Sbjct: 241 VRP 243
>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 445
Score = 201 bits (512), Expect = 5e-52
Identities = 129/293 (44%), Positives = 144/293 (49%), Gaps = 57/293 (19%)
Query: 1 MEEFREGATFLTPYKVLATCQAPFPYIVSVQLPTLDKQETLVAEERRGWKQRGRNG---- 56
MEEF EGATFLTPYKVLATCQAPFPYIVS QLPTLDKQETLVAEE+RGWKQRGRNG
Sbjct: 1 MEEFTEGATFLTPYKVLATCQAPFPYIVSAQLPTLDKQETLVAEEKRGWKQRGRNGENAD 60
Query: 57 ---------------------------------------APGTQRGVREVGSPTRDQEIR 77
PG + + G P
Sbjct: 61 TARLFGTTVYTFEVLGALPPDRSPTPRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAP 120
Query: 78 AGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGG 137
G ++ P G + G P PG P +L P +AG + ++QG
Sbjct: 121 GGQQLRKSRARLPRTRPGREDAAVRGRNRDPAEPGSLRPTSLGF---PARAG-QGQVQGA 176
Query: 138 SSG----ASPRRLPGGRGPAAAFAVEPGTGQRPRNT--SLAQASRSGTVPGLPPASLQPL 191
+ G P+ PG GP+ V G G R L PG PPA L P
Sbjct: 177 APGRRLRGEPKTPPGRSGPSG--GVRSGAGHRAATAEHQLGAGFSVRNGPG-PPARLPPA 233
Query: 192 RV-PYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAP 243
P P PH+PTSRGPGRLLT EPPSRKLPPPLPLCRSRWVLAPPP P
Sbjct: 234 PPGPPLRPARPHNPTSRGPGRLLTCEPPSRKLPPPLPLCRSRWVLAPPPTVRP 286
Score = 49.3 bits (116), Expect = 4e-06
Identities = 84/297 (28%), Positives = 106/297 (35%), Gaps = 53/297 (17%)
Query: 52 RGRNGAPGTQRGVR--EVGSPTRDQEIRA-GSSCGRAARGFPE--PGRGGKTQEWGGGTG 106
RGRN P +R +G P R + + G++ GR RG P+ PGR G + G G
Sbjct: 145 RGRNRDPAEPGSLRPTSLGFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRSGAG 204
Query: 107 TPQSPGPCAPQALASLL-GPGKAGCRARLQGGSSGASPRRL----PGGRGPAAAFAVEPG 161
+ A S+ GPG ARL G R P RGP EP
Sbjct: 205 HRAATAEHQLGAGFSVRNGPGPP---ARLPPAPPGPPLRPARPHNPTSRGPGRLLTCEPP 261
Query: 162 TGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPP----------GPHDPTSR---- 207
+ + P L RS V PP LRV PP G P++R
Sbjct: 262 SRKLPPPLPLC---RSRWVLAPPPTVRPRLRV--LTPPFTLLCALPERGSRTPSTRSAVL 316
Query: 208 -----GPGRLLTREPPSRKLPPPLPLCRSRWVLA----------PPPP---PAPPGPNAA 249
G G LT P SR+ PL R P PP P+ P P A
Sbjct: 317 VDRVAGLGTELTLTPSSRRAHGSHPLSSERQAAPTRAFCSADPLPRPPSFVPSLPSPQAQ 376
Query: 250 AHPPLRPP--RARLQDPVDPERCPG-GPSRGPGHGTHAHSELPTCTRLPSVVFRASG 303
+P RA L R P GP P ++ + P LP +VF + G
Sbjct: 377 GQAVRQPRLLRAALALGAPRGRTPSPGPGPAPALQPYSLTRFPASLSLPDLVFTSVG 433
>gi|239746104 PREDICTED: hypothetical protein XP_002344198 [Homo
sapiens]
Length = 398
Score = 96.3 bits (238), Expect = 3e-20
Identities = 72/196 (36%), Positives = 87/196 (44%), Gaps = 20/196 (10%)
Query: 58 PGTQRGVREVGSPTRDQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQ 117
PG + G P G ++ P +G + G P PG P
Sbjct: 54 PGNPTRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRQGREDAGVGRRNRDPAEPGSLRPT 113
Query: 118 ALASLLGPGKAGCRARLQGGSSG----ASPRRLPGGRGPAAAFAVEPGTGQRP----RNT 169
+L P +AG + R+QG + G P+ PG GP+ V G G R
Sbjct: 114 SLGF---PARAG-QGRVQGAAPGRKLRGEPKTPPGRSGPSGG--VRSGAGHRAAAAEHQL 167
Query: 170 SLAQASRSGTVPG--LPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLP 227
+ R+G P LPPA PL P PP P+ P R P T EPPSRKLPPPLP
Sbjct: 168 GAGFSVRNGPGPPARLPPAPPGPLLRPA-RPPRPYFPRPRTPP---TCEPPSRKLPPPLP 223
Query: 228 LCRSRWVLAPPPPPAP 243
LCRSRWVLAPPPP P
Sbjct: 224 LCRSRWVLAPPPPVRP 239
Score = 39.3 bits (90), Expect = 0.005
Identities = 56/199 (28%), Positives = 69/199 (34%), Gaps = 36/199 (18%)
Query: 103 GGTGTPQSPGP---CAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVE 159
G +SP P +P + +GPG R Q PGG+ + A
Sbjct: 29 GALPPDRSPTPRSRVSPGVTSLAVGPGNP---TRCQRSGVPYEGPGAPGGQQLRKSRARL 85
Query: 160 PGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPS 219
P T Q + + + +R PG SL+P + + A G PGR L EP
Sbjct: 86 PRTRQGREDAGVGRRNRDPAEPG----SLRPTSLGFPARAGQGRVQGAAPGRKLRGEP-- 139
Query: 220 RKLPP----PLPLCRSRW----------------VLAPPPPPA--PPGPNAAAHPPLRPP 257
K PP P RS V P PPA PP P P RPP
Sbjct: 140 -KTPPGRSGPSGGVRSGAGHRAAAAEHQLGAGFSVRNGPGPPARLPPAPPGPLLRPARPP 198
Query: 258 RARLQDPVDPERCPGGPSR 276
R P P C PSR
Sbjct: 199 RPYFPRPRTPPTCE-PPSR 216
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 65.5 bits (158), Expect = 6e-11
Identities = 70/257 (27%), Positives = 87/257 (33%), Gaps = 47/257 (18%)
Query: 57 APGTQRGVREVGSPTRDQEIRAGSSCGRAARG-----------FPEPGRGGKTQEWGGGT 105
AP T VR + + +GS G A G PEP G+ + GGG
Sbjct: 44 APRTPE-VRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGG- 101
Query: 106 GTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQR 165
PQ PGP +P+ GP + R S S +P AA P +
Sbjct: 102 --PQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAK 159
Query: 166 PRNTSLAQASRSGTVPGLPPASLQPLRVPYFAP-PGPHDPTSRG---------------- 208
P + A A+R+G PG P P PGP P G
Sbjct: 160 PAGPA-ALAARAGPGPGPGPGP---------GPGPGPGKPAGPGAAQTLNGSAALLNSHH 209
Query: 209 ---PGRLLTREPPSRKLPPPLPLCRSRWVLAPP--PPPAPPGPNAAAHPPLRPPRARLQD 263
P L P+ LP P P + PP APP P A + P P A
Sbjct: 210 AAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAA 269
Query: 264 PVDPERCPGGPSRGPGH 280
P P P +R PGH
Sbjct: 270 PPPPPPAPATLARPPGH 286
Score = 35.4 bits (80), Expect = 0.067
Identities = 49/173 (28%), Positives = 63/173 (36%), Gaps = 26/173 (15%)
Query: 102 GGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPG 161
G T P P P A Q S G A A GG +G S + PG A A V+
Sbjct: 289 GPPTAAPAVPPPAAAQNGGSA---GAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAE 345
Query: 162 TGQR------PRNTSLAQASRSGTV------PGLPPASLQPLRVPYFAPPGPHDPTSRGP 209
+ +R P +LA + + T P + A P VP PP P PT
Sbjct: 346 SPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVP---PPAPGTPTGLPK 402
Query: 210 G------RLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRP 256
G + L+R P + L + VLAP P P P + L P
Sbjct: 403 GAAGAVTQSLSRTPTATTSGIRATLTPT--VLAPRLPQPPQNPTNIQNFQLPP 453
Score = 33.1 bits (74), Expect = 0.33
Identities = 52/194 (26%), Positives = 63/194 (32%), Gaps = 26/194 (13%)
Query: 78 AGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGG 137
AG G G P PG G +P+ AP A +L G A A + G
Sbjct: 319 AGGPAG--VSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIG 376
Query: 138 --------SSGASPRRLPG---GRGPAAAFAVEPGTGQRP-RNTSLAQASRSGTV--PGL 183
S A P PG G AA AV + P TS +A+ + TV P L
Sbjct: 377 PTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRATLTPTVLAPRL 436
Query: 184 PPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAP 243
P P + F P PG +L R + L P A P
Sbjct: 437 PQPPQNPTNIQNFQLP---------PGMVLVRSENGQLLMIPQQALAQMQAQAHAQPQTT 487
Query: 244 PGPNAAAHPPLRPP 257
P A P PP
Sbjct: 488 MAPRPAT-PTSAPP 500
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 62.0 bits (149), Expect = 7e-10
Identities = 63/210 (30%), Positives = 73/210 (34%), Gaps = 20/210 (9%)
Query: 75 EIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARL 134
E +AG G + FP+ GRG + + G G + PGP P G+ R L
Sbjct: 183 EGKAGPPGGSSRAAFPQGGRG-RGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPL 241
Query: 135 QGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVP--GLPPASLQPLR 192
P P G+ A P G RP L G P LPP P
Sbjct: 242 GPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPP-- 299
Query: 193 VPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPP----PPPAPPGPNA 248
VP + PP P +GP PP PP R L PP PPP PGP
Sbjct: 300 VPGYGPPPGPPPPQQGP------PPPPGPFPP-----RPPGPLGPPLTLAPPPHLPGPPP 348
Query: 249 AAHPPLRPPRARLQDPVDPERCPGGPSRGP 278
A PP P P SRGP
Sbjct: 349 GAPPPAPHVNPAFFPPPTNSGMPTSDSRGP 378
Score = 51.6 bits (122), Expect = 9e-07
Identities = 68/214 (31%), Positives = 75/214 (35%), Gaps = 44/214 (20%)
Query: 125 PGKAGCRARLQGGSS-GASPRRLPGGR---GPAAAFAVEPG--TGQRPRNTSLAQASRSG 178
PG + A QGG G P +PGG GPA P GQ P L G
Sbjct: 189 PGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPG 248
Query: 179 TVPGLPPASLQPLRVPYFAPPGPHD---PTSRGPGRLLTREPPSRKLPPPLPLCRSRWVL 235
PG PP Q L P PP D P PG+ +PP LPP P
Sbjct: 249 P-PGPPPPG-QVLPPPLAGPPNRGDRPPPPVLFPGQPFG-QPPLGPLPPGPP-------- 297
Query: 236 APP-----PPPAPPGPNAAAHP-----------PLRPPRARLQDPVDPERCPGGPSRGPG 279
PP PPP PP P P PL PP P P PG P P
Sbjct: 298 -PPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAP- 355
Query: 280 HGTHAHSELPTCTRLPSVVFRAS------GRPYP 307
H A PT + +P+ R GRP P
Sbjct: 356 HVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPP 389
Score = 46.2 bits (108), Expect = 4e-05
Identities = 48/169 (28%), Positives = 54/169 (31%), Gaps = 36/169 (21%)
Query: 113 PCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLA 172
PC Q L+ + ++ G A P PGG AA G G+ P
Sbjct: 158 PCNKQFLSQFEMQSRKTTQSGQMSGEGKAGP---PGGSSRAAFPQGGRGRGRFP------ 208
Query: 173 QASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSR 232
G VPG PGP P P + PP L PP
Sbjct: 209 -----GAVPGGDRF------------PGPAGPGGPPPPFPAGQTPPRPPLGPP------- 244
Query: 233 WVLAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRGPGHG 281
PP PP PP P PPL P R P P PG P P G
Sbjct: 245 ---GPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLG 290
Score = 33.9 bits (76), Expect = 0.19
Identities = 35/122 (28%), Positives = 41/122 (33%), Gaps = 14/122 (11%)
Query: 90 PEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGG 149
P PG G G P PGP P+ PG G L A P LPG
Sbjct: 299 PVPGYGPPPGPPPPQQGPPPPPGPFPPRP------PGPLGPPLTL------APPPHLPGP 346
Query: 150 R--GPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSR 207
P A V P P N+ + + G P P P + PPG T+R
Sbjct: 347 PPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGREMDTAR 406
Query: 208 GP 209
P
Sbjct: 407 TP 408
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 60.5 bits (145), Expect = 2e-09
Identities = 73/219 (33%), Positives = 82/219 (37%), Gaps = 30/219 (13%)
Query: 52 RGRNGAPGTQRGVREVGSPTRDQEIR-AGSSCGRAARGFPEPGRGGKTQEWG--GGTGTP 108
RG G PG + VG P + AG + RG E G G G G +G P
Sbjct: 718 RGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRG--EQGLTGMPGIRGPPGPSGDP 775
Query: 109 QSPGPCAPQALASLLG-PGKAGCRARLQGG-----SSGASPRRLPGGRGPAAAFAVEPGT 162
PG PQ L G PG+ G + S G+S +PG GP A PG
Sbjct: 776 GKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMG-PPGP 834
Query: 163 GQRPRNTSLAQASRSGTVPGL--PPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSR 220
P A V L PP P PPGP P GP R PP
Sbjct: 835 PGAPGPAGPAGLPGHQEVLNLQGPPGPPGPR-----GPPGPSIPGPPGP-----RGPPGE 884
Query: 221 KLP-PPLP----LCRSRWVLAPPP-PPAPPGPNAAAHPP 253
LP PP P L S L+ PP PP PPGP PP
Sbjct: 885 GLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPP 923
Score = 54.7 bits (130), Expect = 1e-07
Identities = 79/260 (30%), Positives = 96/260 (36%), Gaps = 45/260 (17%)
Query: 51 QRGRNGAPGTQRGVREVGSPTRDQEIRAGSSCGRAARGFPE-PGRGGKTQEWGGGTGTPQ 109
QRGR G G RG E G P ++ G++ G P PG G G +G+P
Sbjct: 622 QRGREGPMGP-RG--EAGPPGSGEKGERGAAGEPGPHGPPGVPGSVGPK----GSSGSPG 674
Query: 110 SPGPCAPQALASLLG----PGKAGCRARL-----QGGSSGASPRRL---PGGRGPAAAFA 157
GP P L L G PG G + + +G PR L PG RG A
Sbjct: 675 PQGPPGPVGLQGLRGEVGLPGVKGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGLPGAVG 734
Query: 158 VEPGT--GQRPRNTSLAQASRSGT----VPGL---PPASLQPLRVPYFAPPGPHD----- 203
EPG P Q R +PG+ P S P + P GP
Sbjct: 735 -EPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTP 793
Query: 204 --PTSRG----PGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPP 257
P +G PG+++T E S P P + PP PP PGP A P
Sbjct: 794 GRPGIKGEPGAPGKIVTSEGSSMLTVPGPP--GPPGAMGPPGPPGAPGPAGPAGLPGHQE 851
Query: 258 RARLQDPVDP--ERCPGGPS 275
LQ P P R P GPS
Sbjct: 852 VLNLQGPPGPPGPRGPPGPS 871
Score = 48.5 bits (114), Expect = 8e-06
Identities = 69/245 (28%), Positives = 85/245 (34%), Gaps = 55/245 (22%)
Query: 52 RGRNGAPGTQRGVREVGSP----TRDQEIRAGSSCGRAARGFP----EPGRGGKTQEWGG 103
RG G PG + +G P + ++ G + RG P EPG G G
Sbjct: 688 RGEVGLPGVKGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGLPGAVGEPGAKGAM----G 743
Query: 104 GTGTPQSPGPCAPQALASLLG----PGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVE 159
G GP Q L + G PG +G + G + P+ LPG G E
Sbjct: 744 PAGPDGHQGPRGEQGLTGMPGIRGPPGPSGDPGK-PGLTGPQGPQGLPGTPG-RPGIKGE 801
Query: 160 PGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPS 219
PG P ++ S TVPG PPGP PG + PP
Sbjct: 802 PGA---PGKIVTSEGSSMLTVPG---------------PPGP-------PGAMGPPGPPG 836
Query: 220 RKLPP-PLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDPERCPG----GP 274
P P L + VL PP PPGP PP + P P PG GP
Sbjct: 837 APGPAGPAGLPGHQEVLNLQGPPGPPGPRG-------PPGPSIPGPPGPRGPPGEGLPGP 889
Query: 275 SRGPG 279
PG
Sbjct: 890 PGPPG 894
Score = 39.3 bits (90), Expect = 0.005
Identities = 59/232 (25%), Positives = 72/232 (31%), Gaps = 49/232 (21%)
Query: 52 RGRNGAPGTQRGVREVGSPTRDQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSP 111
+G G PGT G P +I P PG G G G P +P
Sbjct: 784 QGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGP-PGPPGAM----GPPGPPGAP 838
Query: 112 GPCAP------QALASLLGP-------GKAGCRARLQGGSSGASPRRLPGGRGPAAAFAV 158
GP P Q + +L GP G G G G LPG GP +F
Sbjct: 839 GPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLS 898
Query: 159 E----------------PGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPH 202
P Q P Q + +PG + + PPGP
Sbjct: 899 NSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQG--LPGFSTSGSSSFGLNLQGPPGPP 956
Query: 203 DPTS----RG----PGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGP 246
P +G PG L PS + +V PP PP PPGP
Sbjct: 957 GPQGPKGDKGDPGVPGALGIPSGPSEG-----GSSSTMYVSGPPGPPGPPGP 1003
Score = 32.7 bits (73), Expect = 0.43
Identities = 43/158 (27%), Positives = 54/158 (34%), Gaps = 32/158 (20%)
Query: 105 TGTPQSPGPCAPQALASLLGP----GKAGCRARLQGGSSG-----ASPRRLPGGRGPAAA 155
+G P PGP P+ GP G+ G GSS P PG +GP
Sbjct: 905 SGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQGPKGD 964
Query: 156 FAVE--PGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLL 213
PG P S +S + V G P PPGP P PG +
Sbjct: 965 KGDPGVPGALGIPSGPSEGGSSSTMYVSGPP------------GPPGPPGP----PGSIS 1008
Query: 214 T-----REPPSRKLPPPLPLCRSRWVLAPPPPPAPPGP 246
+ ++ S + V PP PP PPGP
Sbjct: 1009 SSGQEIQQYISEYMQSDSIRSYLSGVQGPPGPPGPPGP 1046
Score = 30.8 bits (68), Expect = 1.6
Identities = 40/138 (28%), Positives = 48/138 (34%), Gaps = 25/138 (18%)
Query: 111 PGPCAPQALASLLGPGKAGCRARLQG--GSSGASPRRLPGGRGPAAAFAVEPGTGQRPRN 168
PGP SLL A +R+ SSG S LPG GP PGT
Sbjct: 1111 PGPPGASGDGSLLSLDYAELSSRILSYMSSSGISIG-LPGPPGPPGL----PGTSYEELL 1165
Query: 169 TSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPL 228
+ L + G V PPGP P PG + + L L
Sbjct: 1166 SLLRGSEFRGIV----------------GPPGPPGPPGI-PGNVWS-SISVEDLSSYLHT 1207
Query: 229 CRSRWVLAPPPPPAPPGP 246
++ PP PP PPGP
Sbjct: 1208 AGLSFIPGPPGPPGPPGP 1225
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 58.2 bits (139), Expect = 1e-08
Identities = 64/190 (33%), Positives = 75/190 (39%), Gaps = 22/190 (11%)
Query: 109 QSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRN 168
Q P P P A + LGP Q S ASP P + PAAA PG P
Sbjct: 731 QDPAPATPVAKGAGLGP---------QAPDSQASPA--PAPQIPAAAPLKGPGPSSSP-- 777
Query: 169 TSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLP- 227
SL + G P LP S P R P PP SR P P + PP LP
Sbjct: 778 -SLPHQAPLGDSPHLP--SPHPTRPPS-RPPSRPQSVSRPPSEPPLHPCPPPQAPPTLPG 833
Query: 228 LCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRGPGHGTHA-HS 286
+ + L PPP + P P A PP P R + Q P P P P P + A S
Sbjct: 834 IFVIQNQLGVPPPASNPAPTAPG-PPQPPLRPQSQPPEGP--LPPAPHLPPSSTSSAVAS 890
Query: 287 ELPTCTRLPS 296
T +RLP+
Sbjct: 891 SSETSSRLPA 900
Score = 44.3 bits (103), Expect = 1e-04
Identities = 49/182 (26%), Positives = 64/182 (35%), Gaps = 27/182 (14%)
Query: 102 GGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPG 161
GG G+P A +L+S A + L G P R R P +
Sbjct: 1251 GGAGGSPSVTWARASSSLSSSSSSSSAA--SSLDADEDGPMPSR---NRPPIKTYEARSR 1305
Query: 162 TGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRK 221
G + L +G + +L P+ P PP P L EPP R
Sbjct: 1306 IGLK-----LKIKQEAGLSKVVHNTALDPVHQP--PPP---------PATLKVAEPPPRP 1349
Query: 222 LPPPLPLCRSRWVLAPPPPPAPPGP--NAAAHPPLRPPRARLQD----PVDPERCPGGPS 275
PPP P + + PPP AP A H P P R ++ P PE P G +
Sbjct: 1350 PPPPPPTGQMNGTVDHPPPAAPERKPLGTAPHCPRLPLRKTYRENVGGPGAPEGTPAGRA 1409
Query: 276 RG 277
RG
Sbjct: 1410 RG 1411
Score = 38.5 bits (88), Expect = 0.008
Identities = 39/127 (30%), Positives = 49/127 (38%), Gaps = 22/127 (17%)
Query: 142 SPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGP 201
+P LPG F ++ G P ++ A + P L P S QP P PP P
Sbjct: 827 APPTLPG------IFVIQNQLGVPPPASNPAPTAPGPPQPPLRPQS-QPPEGPL--PPAP 877
Query: 202 HDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAP---PGPNAAAH------- 251
H P S + + S +LP P P S + L PP P P P H
Sbjct: 878 HLPPSSTSSAVASSSETSSRLPAPTP---SDFQLQFPPSQGPHKSPTPPPTLHLVPEPAA 934
Query: 252 PPLRPPR 258
PP PPR
Sbjct: 935 PPPPPPR 941
Score = 38.1 bits (87), Expect = 0.010
Identities = 51/196 (26%), Positives = 64/196 (32%), Gaps = 41/196 (20%)
Query: 108 PQSPGPCA---PQALASLLGPGKAGCRARLQ-GGSSGASPRR----------LPGGRG-- 151
PQ+P P A PQA PG A ++ G A+P LP R
Sbjct: 648 PQAPTPQAAAPPQATTPQPSPGLASSPEKIVLGQPPSATPTAILTQDSLQMFLPQERSQQ 707
Query: 152 -----------PAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPG 200
PA+ P Q P + A +G P P + P P
Sbjct: 708 PLSAEGPHLSVPASVIVSAPPPAQDPAPATPV-AKGAGLGPQAPDSQASPAPAPQIPAAA 766
Query: 201 PHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAP----PPPPAPPGPNAAAHPPLRP 256
P +GPG S LP PL S + +P PP P P + + PP P
Sbjct: 767 P----LKGPG-----PSSSPSLPHQAPLGDSPHLPSPHPTRPPSRPPSRPQSVSRPPSEP 817
Query: 257 PRARLQDPVDPERCPG 272
P P P PG
Sbjct: 818 PLHPCPPPQAPPTLPG 833
Score = 35.8 bits (81), Expect = 0.051
Identities = 36/148 (24%), Positives = 50/148 (33%), Gaps = 24/148 (16%)
Query: 166 PRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPP 225
P +TS A AS S T LP + ++ + GPH + P L EP + PPP
Sbjct: 881 PSSTSSAVASSSETSSRLPAPTPSDFQLQFPPSQGPHKSPTPPPTLHLVPEPAAPPPPPP 940
Query: 226 --LPLCRSRWVLAPPP----------------------PPAPPGPNAAAHPPLRPPRARL 261
+ + + P P PA P + + P P + L
Sbjct: 941 RTFQMVTTPFPALPQPKALLERFHQVPSGIILQNKAGGAPAAPQTSTSLGPLTSPAASVL 1000
Query: 262 QDPVDPERCPGGPSRGPGHGTHAHSELP 289
P P PS P A + LP
Sbjct: 1001 VSGQAPSGTPTAPSHAPAPAPMAATGLP 1028
Score = 31.2 bits (69), Expect = 1.3
Identities = 54/184 (29%), Positives = 60/184 (32%), Gaps = 45/184 (24%)
Query: 112 GPCAPQALASL-LGPGKAGC----------RARLQGGS--SGASPRRLPGGRGPAAAFAV 158
GP P LAS + P AG L G S GA P G AV
Sbjct: 268 GPSEPVTLASAGVSPQGAGLVIQKNLSAAVATTLNGNSVFGGAGAASAPTGTPSGQPLAV 327
Query: 159 EPGTGQRP----------RNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRG 208
PG G P R + Q +G LPP Q P FAP G
Sbjct: 328 APGLGSSPLVPAPNVILHRTPTPIQPKPAGV---LPPKLYQLTPKP-FAPAGATLTIQGE 383
Query: 209 PGRLLTREPPSRKLPPPLPLCRS-----RWVLAPPPPPA--------PPGPNAAAHPPLR 255
PG L P K P L + VL+ P PA PP A PP +
Sbjct: 384 PGAL----PQQPKAPQNLTFMAAGKAGQNVVLSGFPAPALQANVFKQPPATTTGAAPP-Q 438
Query: 256 PPRA 259
PP A
Sbjct: 439 PPGA 442
Score = 29.3 bits (64), Expect = 4.8
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 147 PGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTS 206
P GPAA ++ G P ++ P P A+ P P P +
Sbjct: 572 PAPAGPAATTVLQ-GVTLPPSAVAMLNTPDGLVQPATPAAATGEAAPVLTVQPAPQAPPA 630
Query: 207 RGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAP-PGPNAAAHP 252
L + P + PP P ++ APP P P P A+ P
Sbjct: 631 VSTPLPLGLQQPQAQQPPQAPTPQA---AAPPQATTPQPSPGLASSP 674
Score = 28.5 bits (62), Expect = 8.2
Identities = 44/175 (25%), Positives = 62/175 (35%), Gaps = 22/175 (12%)
Query: 116 PQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQAS 175
P +L +L P A + A+P ++ G+ V G P + A A
Sbjct: 523 PLSLGPVLAPHSGAHSAHILS----AAPIQV--GQPALFQMPVSLAAGSLPTQSQPAPAG 576
Query: 176 RSGTVP----GLPPASLQPLRVP--YFAPPGPHDPTSRGPGRLLTRE----PPSRKLPPP 225
+ T LPP+++ L P P P T L + PP+ P P
Sbjct: 577 PAATTVLQGVTLPPSAVAMLNTPDGLVQPATPAAATGEAAPVLTVQPAPQAPPAVSTPLP 636
Query: 226 LPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDPERCPGG--PSRGP 278
L L + + PP P P AAA P P+ PE+ G PS P
Sbjct: 637 LGLQQPQ----AQQPPQAPTPQAAAPPQATTPQPSPGLASSPEKIVLGQPPSATP 687
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 58.2 bits (139), Expect = 1e-08
Identities = 63/233 (27%), Positives = 88/233 (37%), Gaps = 35/233 (15%)
Query: 90 PEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGS----------- 138
P P Q G G P +P P L G G G + LQ G
Sbjct: 264 PHPSPHPPLQPLTGSAGQPSAPSHAQPP----LHGQGPPGPHS-LQAGPLLQHPGPPQPF 318
Query: 139 ---SGASPRRLPGGRGPAAAFAVEPGTG-QRPRNTSLAQASRSGTVPGLPPASLQPLRVP 194
AS + P G PAAA+ P T Q P + S Q+ + LPPA PL +P
Sbjct: 319 GLPPQASQGQAPLGTSPAAAY---PHTSLQLPASQSALQSQQPPREQPLPPA---PLAMP 372
Query: 195 YFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAH--P 252
+ PP P P + P + PP P P + + PPPP P + + H P
Sbjct: 373 HIKPP-PTTPIPQLPAPQAHKHPPHLSGPSPFSMNAN----LPPPPALKPLSSLSTHHPP 427
Query: 253 PLRPPRARLQDPVDPERCPGGPSRGPGHGTHAHSELPTCTRLPSVVFRASGRP 305
PP +L P P P++ PG + P + P+ + + + +P
Sbjct: 428 SAHPPPLQLMPQSQP--LPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQP 478
Score = 39.3 bits (90), Expect = 0.005
Identities = 42/174 (24%), Positives = 58/174 (33%), Gaps = 26/174 (14%)
Query: 105 TGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVE-PGTG 163
T PQ P P A + L GP A L P P ++ + P +
Sbjct: 380 TPIPQLPAPQAHKHPPHLSGPSPFSMNANLPP----------PPALKPLSSLSTHHPPSA 429
Query: 164 QRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLP 223
P + Q+ + P PP Q +P PP H PT ++
Sbjct: 430 HPPPLQLMPQSQPLPSSPAQPPGLTQSQNLP--PPPASHPPTGL------------HQVA 475
Query: 224 PPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRG 277
P P + +V PPP PP + + PP P + Q P GG G
Sbjct: 476 PQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTS-AQPPCSGAAASGGSIAG 528
Score = 38.1 bits (87), Expect = 0.010
Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 184 PPASLQPLRVPYFAPPGPHDPTSRGP--GRLLTREPPSRKLPPPLPLCRSRWVLAP---- 237
P S P P PGP + P G + P++ P P+ + AP
Sbjct: 195 PAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHP 254
Query: 238 --PPPPAPPGPNAAAHPPLRPPRARLQDPVDPERC-PGGPSRGP 278
PP P PP P+ + HPPL+P P P P +GP
Sbjct: 255 QRPPSPHPP-PHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGP 297
Score = 35.8 bits (81), Expect = 0.051
Identities = 44/137 (32%), Positives = 51/137 (37%), Gaps = 28/137 (20%)
Query: 147 PGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVP--GLPPASLQPLRVPYFAPPGPHDP 204
P G PA + A PGT Q P A+ VP G P AS P + P PH
Sbjct: 190 PTGVTPAPSSA-PPGTPQLPTPGPTPSAT---AVPPQGSPTASQAPNQPQAPTAPVPHTH 245
Query: 205 TSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAP-------PGPNAAAHPPLRPP 257
+ P L + PPS PPP P +P PP P P + A PPL
Sbjct: 246 IQQAPA-LHPQRPPSPH-PPPHP--------SPHPPLQPLTGSAGQPSAPSHAQPPLHG- 294
Query: 258 RARLQDPVDPERCPGGP 274
Q P P GP
Sbjct: 295 ----QGPPGPHSLQAGP 307
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 58.2 bits (139), Expect = 1e-08
Identities = 63/233 (27%), Positives = 88/233 (37%), Gaps = 35/233 (15%)
Query: 90 PEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGS----------- 138
P P Q G G P +P P L G G G + LQ G
Sbjct: 818 PHPSPHPPLQPLTGSAGQPSAPSHAQPP----LHGQGPPGPHS-LQAGPLLQHPGPPQPF 872
Query: 139 ---SGASPRRLPGGRGPAAAFAVEPGTG-QRPRNTSLAQASRSGTVPGLPPASLQPLRVP 194
AS + P G PAAA+ P T Q P + S Q+ + LPPA PL +P
Sbjct: 873 GLPPQASQGQAPLGTSPAAAY---PHTSLQLPASQSALQSQQPPREQPLPPA---PLAMP 926
Query: 195 YFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAH--P 252
+ PP P P + P + PP P P + + PPPP P + + H P
Sbjct: 927 HIKPP-PTTPIPQLPAPQAHKHPPHLSGPSPFSMNAN----LPPPPALKPLSSLSTHHPP 981
Query: 253 PLRPPRARLQDPVDPERCPGGPSRGPGHGTHAHSELPTCTRLPSVVFRASGRP 305
PP +L P P P++ PG + P + P+ + + + +P
Sbjct: 982 SAHPPPLQLMPQSQP--LPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQP 1032
Score = 39.3 bits (90), Expect = 0.005
Identities = 42/174 (24%), Positives = 58/174 (33%), Gaps = 26/174 (14%)
Query: 105 TGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVE-PGTG 163
T PQ P P A + L GP A L P P ++ + P +
Sbjct: 934 TPIPQLPAPQAHKHPPHLSGPSPFSMNANLPP----------PPALKPLSSLSTHHPPSA 983
Query: 164 QRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLP 223
P + Q+ + P PP Q +P PP H PT ++
Sbjct: 984 HPPPLQLMPQSQPLPSSPAQPPGLTQSQNLP--PPPASHPPTGL------------HQVA 1029
Query: 224 PPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRG 277
P P + +V PPP PP + + PP P + Q P GG G
Sbjct: 1030 PQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTS-AQPPCSGAAASGGSIAG 1082
Score = 38.1 bits (87), Expect = 0.010
Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 184 PPASLQPLRVPYFAPPGPHDPTSRGP--GRLLTREPPSRKLPPPLPLCRSRWVLAP---- 237
P S P P PGP + P G + P++ P P+ + AP
Sbjct: 749 PAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHP 808
Query: 238 --PPPPAPPGPNAAAHPPLRPPRARLQDPVDPERC-PGGPSRGP 278
PP P PP P+ + HPPL+P P P P +GP
Sbjct: 809 QRPPSPHPP-PHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGP 851
Score = 35.8 bits (81), Expect = 0.051
Identities = 44/137 (32%), Positives = 51/137 (37%), Gaps = 28/137 (20%)
Query: 147 PGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVP--GLPPASLQPLRVPYFAPPGPHDP 204
P G PA + A PGT Q P A+ VP G P AS P + P PH
Sbjct: 744 PTGVTPAPSSA-PPGTPQLPTPGPTPSAT---AVPPQGSPTASQAPNQPQAPTAPVPHTH 799
Query: 205 TSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAP-------PGPNAAAHPPLRPP 257
+ P L + PPS PPP P +P PP P P + A PPL
Sbjct: 800 IQQAPA-LHPQRPPSPH-PPPHP--------SPHPPLQPLTGSAGQPSAPSHAQPPLHG- 848
Query: 258 RARLQDPVDPERCPGGP 274
Q P P GP
Sbjct: 849 ----QGPPGPHSLQAGP 861
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 58.2 bits (139), Expect = 1e-08
Identities = 63/233 (27%), Positives = 88/233 (37%), Gaps = 35/233 (15%)
Query: 90 PEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGS----------- 138
P P Q G G P +P P L G G G + LQ G
Sbjct: 818 PHPSPHPPLQPLTGSAGQPSAPSHAQPP----LHGQGPPGPHS-LQAGPLLQHPGPPQPF 872
Query: 139 ---SGASPRRLPGGRGPAAAFAVEPGTG-QRPRNTSLAQASRSGTVPGLPPASLQPLRVP 194
AS + P G PAAA+ P T Q P + S Q+ + LPPA PL +P
Sbjct: 873 GLPPQASQGQAPLGTSPAAAY---PHTSLQLPASQSALQSQQPPREQPLPPA---PLAMP 926
Query: 195 YFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAH--P 252
+ PP P P + P + PP P P + + PPPP P + + H P
Sbjct: 927 HIKPP-PTTPIPQLPAPQAHKHPPHLSGPSPFSMNAN----LPPPPALKPLSSLSTHHPP 981
Query: 253 PLRPPRARLQDPVDPERCPGGPSRGPGHGTHAHSELPTCTRLPSVVFRASGRP 305
PP +L P P P++ PG + P + P+ + + + +P
Sbjct: 982 SAHPPPLQLMPQSQP--LPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAPQP 1032
Score = 39.3 bits (90), Expect = 0.005
Identities = 42/174 (24%), Positives = 58/174 (33%), Gaps = 26/174 (14%)
Query: 105 TGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVE-PGTG 163
T PQ P P A + L GP A L P P ++ + P +
Sbjct: 934 TPIPQLPAPQAHKHPPHLSGPSPFSMNANLPP----------PPALKPLSSLSTHHPPSA 983
Query: 164 QRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLP 223
P + Q+ + P PP Q +P PP H PT ++
Sbjct: 984 HPPPLQLMPQSQPLPSSPAQPPGLTQSQNLP--PPPASHPPTGL------------HQVA 1029
Query: 224 PPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRG 277
P P + +V PPP PP + + PP P + Q P GG G
Sbjct: 1030 PQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTS-AQPPCSGAAASGGSIAG 1082
Score = 38.1 bits (87), Expect = 0.010
Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 184 PPASLQPLRVPYFAPPGPHDPTSRGP--GRLLTREPPSRKLPPPLPLCRSRWVLAP---- 237
P S P P PGP + P G + P++ P P+ + AP
Sbjct: 749 PAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTASQAPNQPQAPTAPVPHTHIQQAPALHP 808
Query: 238 --PPPPAPPGPNAAAHPPLRPPRARLQDPVDPERC-PGGPSRGP 278
PP P PP P+ + HPPL+P P P P +GP
Sbjct: 809 QRPPSPHPP-PHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGP 851
Score = 35.8 bits (81), Expect = 0.051
Identities = 44/137 (32%), Positives = 51/137 (37%), Gaps = 28/137 (20%)
Query: 147 PGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVP--GLPPASLQPLRVPYFAPPGPHDP 204
P G PA + A PGT Q P A+ VP G P AS P + P PH
Sbjct: 744 PTGVTPAPSSA-PPGTPQLPTPGPTPSAT---AVPPQGSPTASQAPNQPQAPTAPVPHTH 799
Query: 205 TSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAP-------PGPNAAAHPPLRPP 257
+ P L + PPS PPP P +P PP P P + A PPL
Sbjct: 800 IQQAPA-LHPQRPPSPH-PPPHP--------SPHPPLQPLTGSAGQPSAPSHAQPPLHG- 848
Query: 258 RARLQDPVDPERCPGGP 274
Q P P GP
Sbjct: 849 ----QGPPGPHSLQAGP 861
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 56.6 bits (135), Expect = 3e-08
Identities = 59/201 (29%), Positives = 77/201 (38%), Gaps = 17/201 (8%)
Query: 92 PGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGG-R 150
P +GG + G PQ P P S P QGG+ P PG +
Sbjct: 205 PPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQ 264
Query: 151 GPAAAFAVEPG--------TGQRPRNTSLAQASRS--GTVPGLPP-ASLQPLRVPYFAPP 199
GP +P G P+ S +++SRS G G PP QP P PP
Sbjct: 265 GPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPP--PPP 322
Query: 200 G-PHDPTSRGPGRLLTREPPSRKL-PPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPP 257
G P P +G + PP + PPP +SR +PP P P P + P PP
Sbjct: 323 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGP-PQQEGNNPQGPP 381
Query: 258 RARLQDPVDPERCPGGPSRGP 278
+P P+ P G +GP
Sbjct: 382 PPAGGNPQQPQAPPAGQPQGP 402
Score = 50.1 bits (118), Expect = 3e-06
Identities = 68/255 (26%), Positives = 89/255 (34%), Gaps = 33/255 (12%)
Query: 58 PGTQRGVREVGSPTRDQEIRAGSSCGRAARGF-------PEPGR-------GGKTQEWGG 103
PG +G G +R G G +G P PG+ GG +
Sbjct: 95 PGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 154
Query: 104 GTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGG-RGPAAAFAVEPG- 161
G PQ P P S P QGG+ P PG +GP +P
Sbjct: 155 PPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 214
Query: 162 -------TGQRPRNTSLAQASRS--GTVPGLPP-ASLQPLRVPYFAPPG-PHDPTSRGPG 210
G P+ + +Q++RS G G PP QP P PPG P P +G
Sbjct: 215 PPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPP--PPPGKPQGPPPQGGN 272
Query: 211 RLLTREPPSRKL-PPPLPLCRSRWVLAPPPPPA---PPGPNAAAHPPLRPPRARLQDPVD 266
+ PP + PPP +SR +PP P P G N PP P + + P
Sbjct: 273 KPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 332
Query: 267 PERCPGGPSRGPGHG 281
+ G P G G
Sbjct: 333 GNKPQGPPPPGKPQG 347
Score = 48.5 bits (114), Expect = 8e-06
Identities = 58/207 (28%), Positives = 80/207 (38%), Gaps = 20/207 (9%)
Query: 92 PGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGG-R 150
P +GG + G PQ P P ++ + PGK QGG+ P PG +
Sbjct: 82 PPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPP-QGGNQPQGPPPPPGKPQ 140
Query: 151 GPAAAFAVEPG--------TGQRPRNTSLAQASRS--GTVPGLPP-ASLQPLRVPYFAPP 199
GP +P G P+ + +++SRS G G PP QP P PP
Sbjct: 141 GPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPP--PPP 198
Query: 200 G-PHDPTSRGPGRLLTREPPSRKL-PPPLPLCRSRWVLAPPPPPA---PPGPNAAAHPPL 254
G P P +G + PP + PPP +S+ +PP P P G N PP
Sbjct: 199 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPP 258
Query: 255 RPPRARLQDPVDPERCPGGPSRGPGHG 281
P + + P + G P G G
Sbjct: 259 PPGKPQGPPPQGGNKPQGPPPPGKPQG 285
Score = 45.8 bits (107), Expect = 5e-05
Identities = 58/220 (26%), Positives = 75/220 (34%), Gaps = 14/220 (6%)
Query: 70 PTRDQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAG 129
P D + R+ S +G P P G + Q G PQ P P PGK
Sbjct: 164 PQGDNKSRSSRSPPGKPQG-PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ 222
Query: 130 CRARLQGGSSGASPRRLPGG-RGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASL 188
QG + S R PG +GP +P P + G P PP
Sbjct: 223 GPPP-QGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 281
Query: 189 QPLRVP---------YFAPPG-PHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPP 238
+P P +PPG P P +G + PP K P P ++ PP
Sbjct: 282 KPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK-PQGPP 340
Query: 239 PPPAPPGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRGP 278
PP P GP R R+ P P + G +GP
Sbjct: 341 PPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGP 380
Score = 40.0 bits (92), Expect = 0.003
Identities = 44/168 (26%), Positives = 56/168 (33%), Gaps = 22/168 (13%)
Query: 135 QGGSSGASPRRLPGG-RGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQPL-- 191
QGG+ P PG +GP +P P + G P PP +P
Sbjct: 42 QGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP 101
Query: 192 -------RVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPP 244
R P P P P +G + PP K P P ++ PPPP P
Sbjct: 102 PPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK-PQGPPPPGKPQ 160
Query: 245 GP--------NAAAHPPLR---PPRARLQDPVDPERCPGGPSRGPGHG 281
GP ++ PP + PP P P PG P P G
Sbjct: 161 GPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 208
Score = 40.0 bits (92), Expect = 0.003
Identities = 52/200 (26%), Positives = 64/200 (32%), Gaps = 25/200 (12%)
Query: 90 PEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGG 149
P P G + Q G PQ P P PGK + G SPR PG
Sbjct: 60 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP--QGPPPQGDKSRSPRSPPGK 117
Query: 150 -RGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRG 208
+GP +P P + G P PP +P PP D SR
Sbjct: 118 PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ-----GPPPQGDNKSRS 172
Query: 209 PGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRA--RLQDPVD 266
+R PP + PP P PP P P PP+ + Q P
Sbjct: 173 -----SRSPPGKPQGPPPQ--------GGNQPQGPPPPPGKPQGP--PPQGGNKPQGPPP 217
Query: 267 PERCPGGPSRGPGHGTHAHS 286
P + G P +G A S
Sbjct: 218 PGKPQGPPPQGDNKSQSARS 237
Score = 39.7 bits (91), Expect = 0.004
Identities = 60/204 (29%), Positives = 72/204 (35%), Gaps = 26/204 (12%)
Query: 87 RGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRL 146
+G P G G K Q G PQ P PQ GP G G P+
Sbjct: 37 QGAPPQG-GNKPQGPPSPPGKPQGP---PPQGGNQPQGPPPP------PGKPQGPPPQ-- 84
Query: 147 PGGRGPAAAFAVEPGTGQRPR---NTSLAQASRSGTVPGLPP-ASLQPLRVPYFAPPG-P 201
GG P PG Q P + S + S G G PP QP P PPG P
Sbjct: 85 -GGNKPQGP--PPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPP--PPPGKP 139
Query: 202 HDPTSRGPGRLLTREPPSRKL-PPPLPLCRSRWVLAPPPPPA---PPGPNAAAHPPLRPP 257
P +G + PP + PPP +SR +PP P P G N PP P
Sbjct: 140 QGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPG 199
Query: 258 RARLQDPVDPERCPGGPSRGPGHG 281
+ + P + G P G G
Sbjct: 200 KPQGPPPQGGNKPQGPPPPGKPQG 223
Score = 36.6 bits (83), Expect = 0.030
Identities = 29/105 (27%), Positives = 36/105 (34%), Gaps = 2/105 (1%)
Query: 177 SGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLA 236
+G G PP + P P P P +G + PP K P P ++
Sbjct: 33 AGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP 92
Query: 237 PPP--PPAPPGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRGPG 279
PPP P PP + P PP P P GP PG
Sbjct: 93 PPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPG 137
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 56.2 bits (134), Expect = 4e-08
Identities = 75/241 (31%), Positives = 87/241 (36%), Gaps = 37/241 (15%)
Query: 44 EERRGWKQRGRNGAPGTQRGVREVGSPTRDQE--IRAGSSCGRAARGFPEPGRGGKTQEW 101
E+R G + R NG PG+ R G D E + G R + P+ R
Sbjct: 268 EDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRG 327
Query: 102 GGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPR------RLPGGRGPAAA 155
G P+ P +L L P A A PR RLP GP
Sbjct: 328 SAAPGPPRGPRLQGGGSLT--LQPDYAKYATFKAAALKAAVPRARRSANRLPRPSGPRPR 385
Query: 156 FAVEPGTGQRPRNTS---LAQASRSG-TVPGLPPASLQPLRVPYFAP---PGPHDPTSRG 208
A Q P T L+ +R G T+P PA P P P P P +R
Sbjct: 386 PAPARSPSQSPAGTPCPVLSLGARRGVTLPCPVPAEAAPRDFCQRFPALEPSPRQPPARA 445
Query: 209 PGRLLTREPPSRKLPPPLPLCRSRWVLAPP--PPPAPPGPNAA------AHP-PLRPPRA 259
P PS LP PL C W APP PPA PGP AA A P PL P A
Sbjct: 446 PR-------PSPDLPAPLDACP--W--APPVYAPPAAPGPYAAWTSSRPARPAPLSHPTA 494
Query: 260 R 260
R
Sbjct: 495 R 495
Score = 33.9 bits (76), Expect = 0.19
Identities = 57/204 (27%), Positives = 70/204 (34%), Gaps = 44/204 (21%)
Query: 92 PGRGGKTQ-EWGGGT--GTPQ-SPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLP 147
P GG Q + G G G+P S GP P+ LA PG+ R G ++ A+ R
Sbjct: 198 PPLGGCVQVQMGDGLPRGSPHNSAGPRTPR-LARASPPGEPFMRVAPPGLAAAAAARDSE 256
Query: 148 GGRGPAAAFAVEPGTGQRPR---------NTSLAQASRSGTVPGLPPASLQPLRVPYFAP 198
G P A E G +PR T+ + R G G + P RV AP
Sbjct: 257 PGPVPGAGGCGEDRLGSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAP 316
Query: 199 --------------PGPHDPTSRGP----GRLLTREPPSRK--------LPPPLPLCRSR 232
PGP RGP G LT +P K L +P R
Sbjct: 317 DKKRLNNAPRGSAAPGP----PRGPRLQGGGSLTLQPDYAKYATFKAAALKAAVPRARRS 372
Query: 233 WVLAPPPPPAPPGPNAAAHPPLRP 256
P P P P A P P
Sbjct: 373 ANRLPRPSGPRPRPAPARSPSQSP 396
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 55.5 bits (132), Expect = 6e-08
Identities = 75/263 (28%), Positives = 89/263 (33%), Gaps = 41/263 (15%)
Query: 52 RGRNGAPGTQRGVREVGSPTRDQEIRAGSSCGRAARGFPE----PGRGGKTQEWG----- 102
RG G PG E G E+ S G ARGFP PG G G
Sbjct: 254 RGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPG--ARGFPGAPGLPGLKGHRGHKGLEGPK 311
Query: 103 ---GGTGTPQSPGPCAPQALASLLGP-GKAGCRARL--QGGSSGASPRRLPGGRGPAAAF 156
G G+ GP P LGP G G R RL QG +PG GP
Sbjct: 312 GEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKPGPMGPL 371
Query: 157 AVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGP-------------HD 203
+ PG+ P N + +G P Q R PPGP
Sbjct: 372 GI-PGSSGFPGNPGMK--GEAGPTGARGPEGPQGQRGET-GPPGPVGSPGLPGAIGTDGT 427
Query: 204 PTSRGP-GRLLTREPPSRKLPPPLPLCRS----RWVLAPPPPPAPPGPNAAAHPPLRPPR 258
P ++GP G T PP PP P + + + P P PG A P P
Sbjct: 428 PGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPGP 487
Query: 259 ARLQDPVDP--ERCPGGPSRGPG 279
+Q P+ P E GP PG
Sbjct: 488 HGIQGPIGPPGEEGKRGPRGDPG 510
Score = 46.2 bits (108), Expect = 4e-05
Identities = 65/222 (29%), Positives = 80/222 (36%), Gaps = 54/222 (24%)
Query: 53 GRNGAPGTQRGVREVGSPTRDQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPG 112
G G PG + G+P RD G+ R RG +PG G G G P +PG
Sbjct: 1041 GPVGEPGPEGPAGNDGTPGRD-----GAVGERGDRG--DPGPAGLP----GSQGAPGTPG 1089
Query: 113 PCAPQALASLLGPGKAGCRARLQGGSSG-------ASPRRLPGGRGPAAAFAVEPGTGQR 165
P PG AG R GS G A R LPG +GP G R
Sbjct: 1090 PVG--------APGDAGQRG--DPGSRGPIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDR 1139
Query: 166 PRNTSLAQASRSGTVPGLPPASLQP----LRVPYF--APPGPHDPTSR--GPGRLLTREP 217
+ G +PG P + + + P+ PPGP P+ + PG L P
Sbjct: 1140 GQKGHRGFTGLQG-LPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGP 1198
Query: 218 PSRKL---------PPPLPLCRSRWVLAPPPPPAPPGPNAAA 250
P + PP P PP PP PPG AA
Sbjct: 1199 PGVRGSVGEAGPEGPPGEP--------GPPGPPGPPGHLTAA 1232
Score = 41.6 bits (96), Expect = 0.001
Identities = 74/266 (27%), Positives = 81/266 (30%), Gaps = 40/266 (15%)
Query: 51 QRGRNGAPGTQRGVREVGSPTRDQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQS 110
Q G G PG + GSP + AGS G P G TQ G TG P S
Sbjct: 856 QPGVKGEPGEPGQKGDAGSP--GPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGS 913
Query: 111 PGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTS 170
G P A GP A P PG GP +PG+ R +
Sbjct: 914 AGRVGPPGPAGAPGP---------------AGPLGEPGKEGPPGLRG-DPGSHGRVGDRG 957
Query: 171 LAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTS-RG----PGRLLTREPPSRKLPPP 225
A G P QP PPGP T RG PG+ R P P
Sbjct: 958 PAGPPGGPGDKGDPGEDGQP---GPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAG 1014
Query: 226 LP----LCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRGPGHG 281
P + PP P PPG N P P P G P R G
Sbjct: 1015 TPGKVGPTGATGDKGPPGPVGPPGSNGPVGEP---------GPEGPAGNDGTPGRDGAVG 1065
Query: 282 THAHSELPTCTRLPSVVFRASGRPYP 307
P LP A G P P
Sbjct: 1066 ERGDRGDPGPAGLPGSQ-GAPGTPGP 1090
Score = 35.8 bits (81), Expect = 0.051
Identities = 52/203 (25%), Positives = 65/203 (32%), Gaps = 24/203 (11%)
Query: 87 RGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLG-PGKAGCRARLQGGSSGASPRR 145
RG P P +Q G G PGP PQ + G PG+ G G G
Sbjct: 128 RGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGA-----PGPPGHPSH- 181
Query: 146 LPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPT 205
PG G + F+ + L + S G+ GL P S+ P+ P GP
Sbjct: 182 -PGPDGLSRPFSAQ--------MAGLDEKSGLGSQVGLMPGSVGPV-----GPRGPQGLQ 227
Query: 206 SRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRARLQDPV 265
+ G T P P P+ SR P PP PG + P
Sbjct: 228 GQQGGAGPTGPPGEPGDPGPMGPIGSR---GPEGPPGKPGEDGEPGRNGNPGEVGFAGSP 284
Query: 266 DPERCPGGPSRGPGHGTHAHSEL 288
PG P G H L
Sbjct: 285 GARGFPGAPGLPGLKGHRGHKGL 307
Score = 33.1 bits (74), Expect = 0.33
Identities = 61/230 (26%), Positives = 73/230 (31%), Gaps = 42/230 (18%)
Query: 51 QRGRNGAPGTQRGVREVGSPTRDQEIRAGSSCGRAARGFPEP-GRGGKTQEWG--GGTGT 107
+ G G PG +G P G R RG P G G E G G G
Sbjct: 478 EAGPKGEPGPHGIQGPIGPP--------GEEGKRGPRGDPGTVGPPGPVGERGAPGNRGF 529
Query: 108 PQSPGPCAPQALASLLGP-GKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRP 166
P S G P+ GP G +G + QG LPG RG V+ G+
Sbjct: 530 PGSDGLPGPKGAQGERGPVGSSGPKGS-QGDPGRPGEPGLPGARGLTGNPGVQGPEGKLG 588
Query: 167 RNTSLAQASRSGTVPGLPPASL----QPLRVPYFAPPGPHD-------------PTSRGP 209
+ + R G PP S+ QP + P G P RG
Sbjct: 589 PLGAPGEDGRPG-----PPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGA 643
Query: 210 GRLLTREPPSRKLPPPLPLCRSRWVLAPPPP------PAPPGPNAAAHPP 253
PS + PP L R PP P P PPGP P
Sbjct: 644 PGKDGEVGPSGPVGPP-GLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKP 692
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 54.7 bits (130), Expect = 1e-07
Identities = 69/237 (29%), Positives = 80/237 (33%), Gaps = 40/237 (16%)
Query: 53 GRNGAPGTQRGVREVGSPTRDQEIRAGSSCGRAARGFP-------EPGRGGKTQEWG--- 102
G G PGT+ +G G R G P EPG G+ E G
Sbjct: 296 GAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQG 355
Query: 103 --------GGTGTPQSPGPCAPQALASLLGP-GKAGCR-----ARLQGGSSGASPRRLPG 148
G G P GP P+ A GP G G R + L G R LPG
Sbjct: 356 LGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPG 415
Query: 149 GRGPAAAFAV--EPGTGQRPRNTSLAQASRSGTVPGLP--PASLQPLRVPYF-APPGPHD 203
GP EPG RP +A A GLP P P +P P GP
Sbjct: 416 AHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIG 475
Query: 204 PTS----RG-------PGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAA 249
P +G PG EP + P + S + PP PP PPGP A
Sbjct: 476 PQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGA 532
Score = 39.7 bits (91), Expect = 0.004
Identities = 69/243 (28%), Positives = 84/243 (34%), Gaps = 57/243 (23%)
Query: 53 GRNGAPGTQR--GVREVGSPTRDQEIRAGSSCGRAARGFP-EPGRGGKTQEWG--GGTGT 107
G+ GAPG G +G P D G P PG G++ G G G
Sbjct: 220 GQGGAPGPPGLPGPAGLGKPGLD--------------GLPGAPGDKGESGPPGVPGPRGE 265
Query: 108 PQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPR 167
P + GP P + + PG AG LPG +GP+ A EPGT P
Sbjct: 266 PGAVGPKGPPGVDGVGVPGAAG----------------LPGPQGPSGAKG-EPGTRGPP- 307
Query: 168 NTSLAQASRSGTVPGLP-------PASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSR 220
L + G +PGLP PA + L P +P +GP L
Sbjct: 308 --GLIGPTGYG-MPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGL-------- 356
Query: 221 KLPPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRGPGH 280
PP LP S + PP P G PP P Q P PG P
Sbjct: 357 GGPPGLP--GSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLP 414
Query: 281 GTH 283
G H
Sbjct: 415 GAH 417
Score = 35.8 bits (81), Expect = 0.051
Identities = 62/208 (29%), Positives = 71/208 (34%), Gaps = 30/208 (14%)
Query: 91 EPG----RGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQG-----GSSGA 141
EPG RG K G G P +PG L GP G + L G G G
Sbjct: 195 EPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLG-KPGLDGLPGAPGDKGE 253
Query: 142 S-PRRLPGGRGPAAAFAVEPGT--GQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAP 198
S P +PG RG EPG + P + +PG S P
Sbjct: 254 SGPPGVPGPRG-------EPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGP 306
Query: 199 PGPHDPTSRG-PGRLLTREPPSRKLPPPLP-LCRSRWVLAPPPPPAPPGPNAAAHPPLRP 256
PG PT G PG P + P +P L R P GP PP P
Sbjct: 307 PGLIGPTGYGMPG---LPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLP 363
Query: 257 PRARL---QDPVDP--ERCPGGPSRGPG 279
A L + P P E PGGP PG
Sbjct: 364 GSAGLPGRRGPPGPKGEAGPGGPPGVPG 391
Score = 33.5 bits (75), Expect = 0.25
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 196 FAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLR 255
+AP P +GP RE + L PLPL + P PP PGP PP
Sbjct: 38 YAPVKYIQPMQKGPVGPPFREGKGQYLEMPLPLLPMD-LKGEPGPPGKPGPRGPPGPPGF 96
Query: 256 PPRARLQDP-VDPERCPGGP 274
P + + P + + P GP
Sbjct: 97 PGKPGMGKPGLHGQPGPAGP 116
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 53.9 bits (128), Expect = 2e-07
Identities = 54/193 (27%), Positives = 68/193 (35%), Gaps = 14/193 (7%)
Query: 87 RGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRL 146
R P+ T + GGG+ + G P L L G R Q +G +
Sbjct: 68 RSAPQIESSKGTNKEGGGSANTR--GASTPPTLGDLFAGGFPVLRPAGQRDVAGGKTGQG 125
Query: 147 PGGRGPAAAFAVE-------PGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPP 199
PG R P+ + P R NTS A + P + P P PP
Sbjct: 126 PGSRAPSPRLPNKTISGPLIPPASPRLGNTSEAHGAARTAPPRPNVPAPPPPTPPPPPPP 185
Query: 200 GPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRA 259
P S P + PP LP+ APPPPP PP P PP PP +
Sbjct: 186 LPPPLPSSSPIKTPLVSPPGPLTKGNLPVVAPPVPCAPPPPPPPPPPT----PPPLPPAS 241
Query: 260 RLQD-PVDPERCP 271
L D V P+ P
Sbjct: 242 VLSDKAVKPQLAP 254
Score = 43.5 bits (101), Expect = 2e-04
Identities = 38/106 (35%), Positives = 44/106 (41%), Gaps = 22/106 (20%)
Query: 179 TVPGLPPAS----------LQPLRVPYFAPPGPHDPTSRGPGRLL--------TREPPSR 220
T P LPPAS L PL +P PP P P PG +EPP+
Sbjct: 233 TPPPLPPASVLSDKAVKPQLAPLHLPPIPPPLPLLPPCGYPGLKAEPASPAQDAQEPPAP 292
Query: 221 KLPPPLPLCRSRWVLAPPPPPAPPGPNAAAH--PPLRPPRARLQDP 264
PPPLP S A P P PG N+++ PPL P Q P
Sbjct: 293 --PPPLPPYASCSPRASLPAPPLPGVNSSSETPPPLPPKSPSFQAP 336
Score = 42.4 bits (98), Expect = 5e-04
Identities = 64/238 (26%), Positives = 80/238 (33%), Gaps = 44/238 (18%)
Query: 52 RGRNGAPGTQRGVREVGSPTRDQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGT---P 108
+G N G R +P ++ AG GFP G+ GG TG
Sbjct: 77 KGTNKEGGGSANTRGASTPPTLGDLFAG--------GFPVLRPAGQRDVAGGKTGQGPGS 128
Query: 109 QSPGPCAPQALAS--LLGPG--KAGCRARLQGGSSGASPR-RLPGGRGPAAAFAVEPGTG 163
++P P P S L+ P + G + G + A PR +P P P
Sbjct: 129 RAPSPRLPNKTISGPLIPPASPRLGNTSEAHGAARTAPPRPNVPAPPPPT------PPPP 182
Query: 164 QRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREP--PSRK 221
P L +S T PP L +P APP P P P T P P+
Sbjct: 183 PPPLPPPLPSSSPIKTPLVSPPGPLTKGNLPVVAPPVPCAPPPPPPPPPPTPPPLPPASV 242
Query: 222 L-----------------PPPLPL---CRSRWVLAPPPPPAPPGPNAAAHPPLRPPRA 259
L PPPLPL C + A P PA A PP PP A
Sbjct: 243 LSDKAVKPQLAPLHLPPIPPPLPLLPPCGYPGLKAEPASPAQDAQEPPAPPPPLPPYA 300
Score = 33.1 bits (74), Expect = 0.33
Identities = 37/142 (26%), Positives = 45/142 (31%), Gaps = 30/142 (21%)
Query: 160 PGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPS 219
PG P + + P LPP + R APP P +S L + PS
Sbjct: 273 PGLKAEPASPAQDAQEPPAPPPPLPPYASCSPRASLPAPPLPGVNSSSETPPPLPPKSPS 332
Query: 220 RKLPPPLPLCRSRWVLAPPPPPAPPGP-------------------NAAAHPPLRPPRAR 260
+ PP + A P PPAPPG N PP R P
Sbjct: 333 FQAPP-----QKAGAQALPAPPAPPGSQPFLQKKRHGRPGAGGGKLNPPPAPPARSPTTE 387
Query: 261 LQDPVD------PERCPGGPSR 276
L P + PGG R
Sbjct: 388 LSSKSQQATAWTPTQQPGGQLR 409
Score = 32.7 bits (73), Expect = 0.43
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 237 PPPPPAPPGPNAAAHPPLRPPRA 259
PPPPP PP P PP PP A
Sbjct: 6 PPPPPLPPPPPPLGAPPPPPPSA 28
Score = 30.0 bits (66), Expect = 2.8
Identities = 18/37 (48%), Positives = 18/37 (48%), Gaps = 16/37 (43%)
Query: 223 PPPLPLCRSRWVLAPPPPP--APPGPNAAAHPPLRPP 257
PPPLP PPPPP APP P PP PP
Sbjct: 8 PPPLP---------PPPPPLGAPPPP-----PPSAPP 30
Score = 28.9 bits (63), Expect = 6.2
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 6/30 (20%)
Query: 217 PPSRKLPPPLPLCRSRWVLAPPPPPAPPGP 246
PP LPPP P L PPPP P P
Sbjct: 6 PPPPPLPPPPP------PLGAPPPPPPSAP 29
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 53.9 bits (128), Expect = 2e-07
Identities = 56/186 (30%), Positives = 69/186 (37%), Gaps = 32/186 (17%)
Query: 131 RARLQGGSSGASPRRLPGG-RGPAAAF-AVEPGTG----QRPRNTSLAQASRSGTVPGLP 184
R R +GG G RR GG RG F + PG G + P Q+ +P P
Sbjct: 5 RFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPIPPPP 64
Query: 185 PASLQPLRVPYFAPPG---PHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPP 241
P Q P PP PH P +P ++ PPP P S+ V+A P P
Sbjct: 65 PHQQQQQPPPQQPPPQQPPPHQPPPHP-------QPHQQQQPPPPPQDSSKPVVAQGPGP 117
Query: 242 APPGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRGPGHGTHAHSELPTCTRLPSVVFRA 301
AP +A PP + P P P GPG PT T P+V
Sbjct: 118 APGVGSA-------PPASSSAPPATPPTSGAPPGSGPG---------PTPTPPPAVTSAP 161
Query: 302 SGRPYP 307
G P P
Sbjct: 162 PGAPPP 167
Score = 40.0 bits (92), Expect = 0.003
Identities = 43/164 (26%), Positives = 50/164 (30%), Gaps = 23/164 (14%)
Query: 124 GPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGL 183
GPG A SS A P P P + G G P ++ G P
Sbjct: 114 GPGPAPGVGSAPPASSSAPPATPPTSGAPPGS-----GPGPTPTPPPAVTSAPPGAPPPT 168
Query: 184 PPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAP 243
PP+S P P P P GPG P ++ P P P P
Sbjct: 169 PPSSGVPTTPPQAGGPPPPPAAVPGPG------PGPKQGPGP---------GGPKGGKMP 213
Query: 244 PGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRGPGHGTHAHSE 287
GP P L P P P R G P G H H +
Sbjct: 214 GGPKPGGGPGLSTPGGH---PKPPHRGGGEPRGGRQHHPPYHQQ 254
Score = 28.5 bits (62), Expect = 8.2
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 72 RDQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCR 131
R++++R G G G P G K GGG G P P A S G
Sbjct: 606 RERDMRMGGG-GAMNMGDPYGSGGQKFPPLGGGGGIGYEANPGVPPATMSGSMMGSDMRT 664
Query: 132 ARLQGGSSGASPRRLPGGRGP 152
R G +G + P G GP
Sbjct: 665 ERFGQGGAGPVGGQGPRGMGP 685
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 53.9 bits (128), Expect = 2e-07
Identities = 50/154 (32%), Positives = 58/154 (37%), Gaps = 13/154 (8%)
Query: 136 GGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRS-GTVPGLPPASLQPLRVP 194
G S+ +S ++ P P + P G P A R G GLPP P P
Sbjct: 382 GTSTASSQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGP-PPGAPP 440
Query: 195 YFAPPGPHDPTSRGP-GRLLTREPPSRKLPPPLPLCRSRWVLAPPP--------PPAPPG 245
+ PPG P RGP RLL PP + P P P PPP PPAPPG
Sbjct: 441 FLRPPGM--PGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPG 498
Query: 246 PNAAAHPPLRPPRARLQDPVDPERCPGGPSRGPG 279
+RPP P P P P PG
Sbjct: 499 IPPPRPGMMRPPLVPPLGPAPPGLFPPAPLPNPG 532
Score = 48.1 bits (113), Expect = 1e-05
Identities = 41/114 (35%), Positives = 47/114 (41%), Gaps = 20/114 (17%)
Query: 169 TSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPL 228
TS A + + +PP+ +Q APP P P GP PP+ L PP P
Sbjct: 383 TSTASSQQQAPPQSVPPSQIQ-------APPMP-GPPPLGP-------PPAPPLRPPGPP 427
Query: 229 CRSRWVLAPPPPP-APPGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRGPGHG 281
L P PPP APP P LR P RL P P P GP GP G
Sbjct: 428 TG----LPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPG 477
Score = 46.6 bits (109), Expect = 3e-05
Identities = 55/171 (32%), Positives = 59/171 (34%), Gaps = 56/171 (32%)
Query: 102 GGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPG 161
G TG P P P AP L PG G R G PR LP G P
Sbjct: 425 GPPTGLPPGPPPGAPPFLRP---PGMPGLR--------GPLPRLLPPG----------PP 463
Query: 162 TGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRK 221
G+ P G PG PP PPGP P P RL PP
Sbjct: 464 PGRPP-----------GPPPGPPPG----------LPPGP--PPRGPPPRLPPPAPPG-- 498
Query: 222 LPPPLPLCRSRWVLAPPPPPAPPG---------PNAAAHPPLRPPRARLQD 263
+PPP P R L PP PAPPG P + PP R + D
Sbjct: 499 IPPPRP-GMMRPPLVPPLGPAPPGLFPPAPLPNPGVLSAPPNLIQRPKADD 548
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 53.9 bits (128), Expect = 2e-07
Identities = 64/198 (32%), Positives = 75/198 (37%), Gaps = 41/198 (20%)
Query: 92 PGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARL-----QGGSSGASPRRL 146
P R T GG G+ P QA +L GPG RL GGSS SPR L
Sbjct: 148 PCRVPPTTPLNGGPGSLPPEPPSVSQAFPTLAGPGGL-FPPRLADPVPSGGSS--SPRFL 204
Query: 147 PGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTS 206
P G P+ A P + + A RS VP +PP PH +S
Sbjct: 205 PRGNAPSPAPPPPPAISLNAPSYNWGAALRSSLVPS-----------DLGSPPAPHASSS 253
Query: 207 RGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAH--PPLRPP--RARLQ 262
PPS PPL C A PPP PP N AH P +PP A +
Sbjct: 254 ----------PPS---DPPLFHCSD----ALTPPPLPPSNNLPAHPGPASQPPVSSATMH 296
Query: 263 DPVDPERCPGGPS-RGPG 279
P+ G P+ GPG
Sbjct: 297 LPLVLGPLGGAPTVEGPG 314
Score = 40.4 bits (93), Expect = 0.002
Identities = 52/177 (29%), Positives = 62/177 (35%), Gaps = 55/177 (31%)
Query: 179 TVPGLPPASLQPLRVPYFAP---------PGPHD-----PTSRGPGRLLTREPPSRKLPP 224
TV PP++ P RVP P P P PT GPG L PP P
Sbjct: 137 TVSPGPPSARPPCRVPPTTPLNGGPGSLPPEPPSVSQAFPTLAGPGGLF---PPRLADPV 193
Query: 225 PLPLCRSRWVL--------APPPPPA-------------------------PPGPNAAAH 251
P S L APPPPPA PP P+A++
Sbjct: 194 PSGGSSSPRFLPRGNAPSPAPPPPPAISLNAPSYNWGAALRSSLVPSDLGSPPAPHASSS 253
Query: 252 PPLRPPRARLQDPVDPERCPGGPSRG-PGH-GTHAHSELPTCT-RLPSVVFRASGRP 305
PP PP D + P P PS P H G + + + T LP V+ G P
Sbjct: 254 PPSDPPLFHCSDALTPPPLP--PSNNLPAHPGPASQPPVSSATMHLPLVLGPLGGAP 308
Score = 37.0 bits (84), Expect = 0.023
Identities = 48/167 (28%), Positives = 67/167 (40%), Gaps = 20/167 (11%)
Query: 146 LPGGRGPAAAFAVEPGTGQRP--RNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHD 203
LP GP G G P ++ L+ A+++ P PP++LQ R AP H
Sbjct: 297 LPLVLGPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHS 356
Query: 204 PTSRGPGRLLTREPPS--RKLPPPLPLCRSRWVLAPPPPPAP-PGPNAAAHP--PLRPPR 258
+ R P + R PP+ R L P R + P PAP P P + P P+ P
Sbjct: 357 SSLR-PSQRRPRRPPTVFRLLEGRGPQTPRR---SRPRAPAPVPQPFSLPEPSQPILPSV 412
Query: 259 ARLQDPVDPERCPGGPSRGPGHGTHAHSELPTCTRLPSVVFRASGRP 305
L G P+ GP H + + L + LP +SG P
Sbjct: 413 LSLL---------GLPTPGPSHSDGSFNLLGSDAHLPPPPTLSSGSP 450
Score = 34.7 bits (78), Expect = 0.11
Identities = 67/229 (29%), Positives = 73/229 (31%), Gaps = 41/229 (17%)
Query: 108 PQSPGPCAPQALASL-LGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGT-GQR 165
P P P L +G G A L GG + P G A F PG G
Sbjct: 485 PVVPSPVLQSPSEGLGMGAGPACPLPPLAGGEAFPFPSPEQGLALSGAGF---PGMLGAL 541
Query: 166 PRNTSLAQASRSGTVPG-----LPPASLQPLRVPYFAPPGPHDPT-----SRGPGRLLTR 215
P SL Q S + L QP P PPG P GP L+
Sbjct: 542 PLPLSLGQPPPSPLLNHSLFGVLTGGGGQPPPEPLLPPPGGPGPPLAPGEPEGPSLLVAS 601
Query: 216 EPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDPERCPGGPS 275
P PPP L PPP APP A+ PL D GGPS
Sbjct: 602 LLP----PPPSDLL--------PPPSAPPSNLLASFLPLLALGPTAGDGEGSAEGAGGPS 649
Query: 276 RGPGHGTHAHSEL--------PTCTRLPSVVFRA-----SGR-PYPCFL 310
P G S L PT L S + A SG P PC L
Sbjct: 650 GEPFSGLGDLSPLLFPPLSAPPTLIALNSALLAATLDPPSGTPPQPCVL 698
Score = 33.1 bits (74), Expect = 0.33
Identities = 59/217 (27%), Positives = 71/217 (32%), Gaps = 27/217 (12%)
Query: 90 PEPGRG-GKTQEWGGGTGTPQSP-GPCAPQALASLLGPG-----KAGCRARLQGGSSGAS 142
P G G G + GG +G P S G +P L P + A SG
Sbjct: 633 PTAGDGEGSAEGAGGPSGEPFSGLGDLSPLLFPPLSAPPTLIALNSALLAATLDPPSGTP 692
Query: 143 PRRLPGGRGPAAAFAVEPG--TGQRPRNTSLAQASRSGTVP---GLPPASLQPLRVPYFA 197
P+ P A +PG T T+ AS G P G PP L PL
Sbjct: 693 PQ-------PCVLSAPQPGPPTSSVTTATTDPGASSLGKAPSNSGRPPQLLSPLLGASLL 745
Query: 198 PPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPP 257
G + PG L PS L PP PL + L P P P + A PL
Sbjct: 746 --GDLSSLTSSPGAL-----PSL-LQPPGPLLSGQLGLQLLPGGGAPPPLSEASSPLACL 797
Query: 258 RARLQDPVDPERCPGGPSRGPGHGTHAHSELPTCTRL 294
LQ P + P P P P + L
Sbjct: 798 LQSLQIPPEQPEAPCLPPESPASALEPEPARPPLSAL 834
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 53.5 bits (127), Expect = 2e-07
Identities = 62/235 (26%), Positives = 78/235 (33%), Gaps = 16/235 (6%)
Query: 53 GRNGAPGTQRGVREVGSPTRDQEIRAGSSCGRAARGF-------PEPGRGGKTQEWGGGT 105
G+ P Q G + G P R G G+ +G P PG+ GG
Sbjct: 76 GKPEGPPPQGGNQSQGPPPRP-----GKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQ 130
Query: 106 GTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQR 165
P P P+ G G R G G P+ +GP G +
Sbjct: 131 SQGPPPRPGKPEGPPPQGGNQSQGPPPR-PGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQ 189
Query: 166 PRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPP 225
N S R G G PP + P P P P S+G + P K P
Sbjct: 190 GGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGP 249
Query: 226 LPLCRSRWVLAPPP--PPAPPGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRGP 278
P ++ PPP P PP P PL PP + Q P P + G P R P
Sbjct: 250 PPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQ-GGRPHRPP 303
Score = 43.9 bits (102), Expect = 2e-04
Identities = 55/212 (25%), Positives = 72/212 (33%), Gaps = 15/212 (7%)
Query: 90 PEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGG 149
P PG+ GG P P P+ G G R G G P+
Sbjct: 73 PRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPR-PGKPEGPPPQGGNQS 131
Query: 150 RGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGP 209
+GP G + N S R G G PP + P P P P +G
Sbjct: 132 QGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGG 191
Query: 210 GRLLTREPPSRKLPP--PLPLCRSRWVLAPPPPPAPPGP-----NAAAHPPLRPPRARLQ 262
+ ++ PP R P P P ++ PP P P GP N PP P + +
Sbjct: 192 NQ--SQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGP 249
Query: 263 DPVD---PER--CPGGPSRGPGHGTHAHSELP 289
P + P+R PG P P G + LP
Sbjct: 250 PPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLP 281
Score = 42.7 bits (99), Expect = 4e-04
Identities = 50/195 (25%), Positives = 62/195 (31%), Gaps = 7/195 (3%)
Query: 90 PEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGG 149
P PG+ GG P P P+ G G R G G P+
Sbjct: 52 PPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPR-PGKPEGQPPQGGNQS 110
Query: 150 RGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGP 209
+GP G + N S R G G PP + P P P P +G
Sbjct: 111 QGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGG 170
Query: 210 GRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGP-----NAAAHPPLRPPRARLQDP 264
+ P K P P ++ PP P P GP N + PP RP + P
Sbjct: 171 NQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPE-GPP 229
Query: 265 VDPERCPGGPSRGPG 279
P GP PG
Sbjct: 230 SQGGNKPQGPPPHPG 244
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 53.1 bits (126), Expect = 3e-07
Identities = 46/147 (31%), Positives = 55/147 (37%), Gaps = 15/147 (10%)
Query: 137 GSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYF 196
G++ +P R P G AAA A P T P P P A+ P R P
Sbjct: 105 GATPPAPPRAPRGAPAAAAAAAPPPTPAPPP-------------PPAPVAAAAPARAPRA 151
Query: 197 APPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPP--APPGPNAAAHPPL 254
A P S GP + R + L P P + +APP P APP AA PPL
Sbjct: 152 AAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPL 211
Query: 255 RPPRARLQDPVDPERCPGGPSRGPGHG 281
PP P + P P P G
Sbjct: 212 PPPPQPPAPPQQQQPPPPQPQPPPEGG 238
Score = 48.5 bits (114), Expect = 8e-06
Identities = 47/147 (31%), Positives = 56/147 (38%), Gaps = 18/147 (12%)
Query: 107 TPQSPGPCAPQ---ALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTG 163
TP +P P AP+ A A+ P + A+P R P AA PG
Sbjct: 107 TPPAP-PRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPA 165
Query: 164 QR-PRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKL 222
Q PR A R+ + PPA P P APP P P + REPP
Sbjct: 166 QPGPR------AQRAAPLAAPPPAPAAP---PAVAPPA--GPRRAPPPAVAAREPPLP-- 212
Query: 223 PPPLPLCRSRWVLAPPPPPAPPGPNAA 249
PPP P + PPP P PP A
Sbjct: 213 PPPQPPAPPQQQQPPPPQPQPPPEGGA 239
Score = 44.7 bits (104), Expect = 1e-04
Identities = 38/115 (33%), Positives = 42/115 (36%), Gaps = 11/115 (9%)
Query: 167 RNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPL 226
RN + Q R G P PP + P P A PT P P + P
Sbjct: 94 RNAARVQPPRRGATPPAPPRA--PRGAPAAAAAAAPPPTPAPPP---PPAPVAAAAPARA 148
Query: 227 PLCRSRWVLAPPPP-PAPPGPNAAAHPPLR--PPRARLQDPVDPERCPGGPSRGP 278
P + APP P PA PGP A PL PP V P P GP R P
Sbjct: 149 PRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAP---PAGPRRAP 200
Score = 40.8 bits (94), Expect = 0.002
Identities = 33/90 (36%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 216 EPPSRKLPPPLPLCRSRWV------LAPPPPPAPPGPNA--AAHPPLRPPRARLQDPVDP 267
+PP R PP P R APPP PAPP P A AA P R PRA P
Sbjct: 100 QPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAP 159
Query: 268 ERCPGGPSRGPGH-GTHAHSELPTCTRLPS 296
PS GP G A P P+
Sbjct: 160 ------PSPGPAQPGPRAQRAAPLAAPPPA 183
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 52.8 bits (125), Expect = 4e-07
Identities = 67/223 (30%), Positives = 83/223 (37%), Gaps = 30/223 (13%)
Query: 83 GRAARGFPEPG-RGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGA 141
GR+ P G R GKT +W G G+ +P P A L P R G A
Sbjct: 108 GRSKPSPPVSGTRRGKTGQWKEGRGSHPTPEPQRLAARRWLHSP-----REPTPPGRLSA 162
Query: 142 SPRRLPGGRGPAAAFAVEP--GTGQRPRNTSLAQA---------SRSGTVPGLPPASLQP 190
PR P + A P G+G+ PR QA + G+V L P S +P
Sbjct: 163 PPRHGPHPQSFRRPSAHPPGRGSGRVPRGQPEQQAWEQRSSHFLAPEGSVASLLP-SAKP 221
Query: 191 LRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWV--------LAPPPPPA 242
R P AP + + GR P +R PL R LA PPP
Sbjct: 222 ARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQPPLARLLLASAVSLAASLARSPPPL 281
Query: 243 PPGPNAAAHPPLRPPRARLQDP---VDPERCPGGPSRGP-GHG 281
P +A+ P L P A + P P RC R P GHG
Sbjct: 282 QPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHG 324
Score = 33.1 bits (74), Expect = 0.33
Identities = 57/209 (27%), Positives = 69/209 (33%), Gaps = 44/209 (21%)
Query: 68 GSPTRDQEIRAGSSCG-RAARGFPEPGRGGKTQEWGGGTGTPQSP-GPCAPQALASLLGP 125
G P R G G R RG E G+ Q G G+P P GP AP G
Sbjct: 324 GLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQ--GCALGSPPIPAGPAAP----GRAGE 377
Query: 126 GKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPP 185
+A + R +GG G SPR G G V G R R +S T G P
Sbjct: 378 RRAARQWRKRGGGPGVSPREGAQGEG------VRGGVTPRARGSSTCLRPSPATWQGGAP 431
Query: 186 -----ASLQPLRVPYFAP---PGPH---DPTSRGPGRLLTREPPSRKLPPPLPL------ 228
A+ L P PG H +PT T+ P + P P
Sbjct: 432 YRAIFAAGPRLSAPSAEAEEVPGGHTASNPTYEPLSSRRTKAPSEGRDSPSSPATSTHYL 491
Query: 229 -------------CRSRWVLAPPPPPAPP 244
RS + +PP P PP
Sbjct: 492 DRESGLGSVNSHPSRSPYNWSPPSPSVPP 520
Score = 30.4 bits (67), Expect = 2.1
Identities = 42/134 (31%), Positives = 50/134 (37%), Gaps = 26/134 (19%)
Query: 147 PGGRGPAAAFAVEPGTGQRPRNTSLAQASRSG-------TVPGL---PPASLQPLRVPYF 196
P RG A TG +P A R+G T PG P SL P +
Sbjct: 51 PRARGVEVASGRTRWTGPQPL-VDTPPARRAGELCEAPQTAPGFHFQPFLSLSPHQERGR 109
Query: 197 APPGPH-DPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAP--PPPP----APP--GPN 247
+ P P T RG S P P L RW+ +P P PP APP GP+
Sbjct: 110 SKPSPPVSGTRRGKTGQWKEGRGSHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRHGPH 169
Query: 248 ------AAAHPPLR 255
+AHPP R
Sbjct: 170 PQSFRRPSAHPPGR 183
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 52.8 bits (125), Expect = 4e-07
Identities = 67/223 (30%), Positives = 83/223 (37%), Gaps = 30/223 (13%)
Query: 83 GRAARGFPEPG-RGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGA 141
GR+ P G R GKT +W G G+ +P P A L P R G A
Sbjct: 108 GRSKPSPPVSGTRRGKTGQWKEGRGSHPTPEPQRLAARRWLHSP-----REPTPPGRLSA 162
Query: 142 SPRRLPGGRGPAAAFAVEP--GTGQRPRNTSLAQA---------SRSGTVPGLPPASLQP 190
PR P + A P G+G+ PR QA + G+V L P S +P
Sbjct: 163 PPRHGPHPQSFRRPSAHPPGRGSGRVPRGQPEQQAWEQRSSHFLAPEGSVASLLP-SAKP 221
Query: 191 LRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWV--------LAPPPPPA 242
R P AP + + GR P +R PL R LA PPP
Sbjct: 222 ARAPRPAPRAREEAAAGSRGRGGAERPAARGSAQQPPLARLLLASAVSLAASLARSPPPL 281
Query: 243 PPGPNAAAHPPLRPPRARLQDP---VDPERCPGGPSRGP-GHG 281
P +A+ P L P A + P P RC R P GHG
Sbjct: 282 QPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHG 324
Score = 33.1 bits (74), Expect = 0.33
Identities = 57/209 (27%), Positives = 69/209 (33%), Gaps = 44/209 (21%)
Query: 68 GSPTRDQEIRAGSSCG-RAARGFPEPGRGGKTQEWGGGTGTPQSP-GPCAPQALASLLGP 125
G P R G G R RG E G+ Q G G+P P GP AP G
Sbjct: 324 GLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQ--GCALGSPPIPAGPAAP----GRAGE 377
Query: 126 GKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPP 185
+A + R +GG G SPR G G V G R R +S T G P
Sbjct: 378 RRAARQWRKRGGGPGVSPREGAQGEG------VRGGVTPRARGSSTCLRPSPATWQGGAP 431
Query: 186 -----ASLQPLRVPYFAP---PGPH---DPTSRGPGRLLTREPPSRKLPPPLPL------ 228
A+ L P PG H +PT T+ P + P P
Sbjct: 432 YRAIFAAGPRLSAPSAEAEEVPGGHTASNPTYEPLSSRRTKAPSEGRDSPSSPATSTHYL 491
Query: 229 -------------CRSRWVLAPPPPPAPP 244
RS + +PP P PP
Sbjct: 492 DRESGLGSVNSHPSRSPYNWSPPSPSVPP 520
Score = 30.4 bits (67), Expect = 2.1
Identities = 42/134 (31%), Positives = 50/134 (37%), Gaps = 26/134 (19%)
Query: 147 PGGRGPAAAFAVEPGTGQRPRNTSLAQASRSG-------TVPGL---PPASLQPLRVPYF 196
P RG A TG +P A R+G T PG P SL P +
Sbjct: 51 PRARGVEVASGRTRWTGPQPL-VDTPPARRAGELCEAPQTAPGFHFQPFLSLSPHQERGR 109
Query: 197 APPGPH-DPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAP--PPPP----APP--GPN 247
+ P P T RG S P P L RW+ +P P PP APP GP+
Sbjct: 110 SKPSPPVSGTRRGKTGQWKEGRGSHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRHGPH 169
Query: 248 ------AAAHPPLR 255
+AHPP R
Sbjct: 170 PQSFRRPSAHPPGR 183
>gi|110431370 espin [Homo sapiens]
Length = 854
Score = 52.4 bits (124), Expect = 5e-07
Identities = 43/127 (33%), Positives = 52/127 (40%), Gaps = 16/127 (12%)
Query: 131 RARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQP 190
RA + S+G R+L GR P A PG Q +R+G P L PA+
Sbjct: 508 RAFSKQPSTGDYYRQL--GRCPGETLAARPGMAHS-EEVRARQPARAGC-PRLGPAARGS 563
Query: 191 LRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAA 250
L P P P + P SR+LPPP PPPP PP P AA+
Sbjct: 564 LEGPSAPPQAALLPGNHVPNGCAADPKASRELPPP------------PPPPPPPLPEAAS 611
Query: 251 HPPLRPP 257
PP PP
Sbjct: 612 SPPPAPP 618
Score = 33.1 bits (74), Expect = 0.33
Identities = 29/96 (30%), Positives = 33/96 (34%), Gaps = 11/96 (11%)
Query: 168 NTSLAQASRSGTVPGLPPASLQPLRVP----YFAPPGPHDPTSRGPGRLLTREPPSRKLP 223
N +S S PP L R Y P RG T PP P
Sbjct: 379 NYDSCSSSHSSIKGQHPPCGLSSARAADIQSYMDMLNPELGLPRGTIGKPTPPPPPPSFP 438
Query: 224 PPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRA 259
PP P ++ PPPPP P P PP+ P A
Sbjct: 439 PPPPPPGTQ---LPPPPPGYPAPK----PPVGPQAA 467
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/85 (31%), Positives = 32/85 (37%), Gaps = 10/85 (11%)
Query: 200 GPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRA 259
G H P R + L P L L R + P PPP PP + PP PP
Sbjct: 392 GQHPPCGLSSARAADIQSYMDMLNPELGLPRGT-IGKPTPPPPPP----SFPPPPPPPGT 446
Query: 260 RLQDPVDPERCPGGPSRGPGHGTHA 284
+L P PG P+ P G A
Sbjct: 447 QLPPPP-----PGYPAPKPPVGPQA 466
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 52.0 bits (123), Expect = 7e-07
Identities = 58/198 (29%), Positives = 73/198 (36%), Gaps = 31/198 (15%)
Query: 103 GGTGTPQSPG----PCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFA- 157
GG +P SP P A QA AG A+ + S SP PG P ++
Sbjct: 642 GGDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQDRRESLPTSPPWTPGASRPPSSLDG 701
Query: 158 -VEPGTGQRPRNTSLAQASRSGTVPGLPPA----SLQPLRVPYFAPPGPHDPTSRGPGRL 212
V PG + R +S++ P + P+ S+ PLR P P SR L
Sbjct: 702 WVSPGPWEPGRGSSMSSPPPLPPPPPMSPSWSERSVSPLR-----PETEARPPSRQLQAL 756
Query: 213 LTRE-----------PPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRARL 261
L R P S P P R PPPPP PP P + P RP A +
Sbjct: 757 LARNIINAARRKSASPRSAGAENPRPFSPPR-APPPPPPPPPPPPRMRSPQPARPGSAAV 815
Query: 262 QD----PVDPERCPGGPS 275
P+ P GPS
Sbjct: 816 PGAAFAPIPRSPLPAGPS 833
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 52.0 bits (123), Expect = 7e-07
Identities = 56/217 (25%), Positives = 78/217 (35%), Gaps = 30/217 (13%)
Query: 58 PGTQRGVREVGSPTRDQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQ 117
PGT + + P + + GS + +PG Q G G Q PGP P
Sbjct: 356 PGTTKPPAQPLGPAKPPAQQTGSEKPSSE----QPGPKALAQPPGVGKTPAQQPGPAKPP 411
Query: 118 ALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRP-RNTSLAQASR 176
+ G L SP + PG P +PG G+ P + + S
Sbjct: 412 TQ-------QVGTPKPLAQQPGLQSPAKAPG---PTKTPVQQPGPGKIPAQQAGPGKTSA 461
Query: 177 SGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPG--RLLTREPPSRKLPPPLPLCRSRWV 234
T P PP+ L P PGP P + PG + +++P S K PP P
Sbjct: 462 QQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQP------- 514
Query: 235 LAPPPPPAPPGPNAAAHPPLRP----PRARLQDPVDP 267
P P+P P + P +P P A+ P P
Sbjct: 515 --GPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKP 549
Score = 46.6 bits (109), Expect = 3e-05
Identities = 48/190 (25%), Positives = 69/190 (36%), Gaps = 21/190 (11%)
Query: 104 GTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTG 163
GTG P PQ + L + R + + P P+ +P G
Sbjct: 253 GTGKPIQGPTQTPQTDHAKLPLQRDASRPQTKQADIVRGESVKPSLPSPSKPPIQQPTPG 312
Query: 164 QRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLP 223
+ P + S+ G P PPA L P PG P + PG T +PP++ L
Sbjct: 313 KPPAQQPGHEKSQPG--PAKPPAQPSGLTKPLAQQPGTVKPPVQPPG---TTKPPAQPLG 367
Query: 224 PPLPLCRSRWVLAPPPPPAPPGPNAAAHP------------PLRPPRARLQDPVDPERCP 271
P P + + P PGP A A P P +PP ++ P + P
Sbjct: 368 PAKPPAQQTG--SEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQP 425
Query: 272 G--GPSRGPG 279
G P++ PG
Sbjct: 426 GLQSPAKAPG 435
Score = 43.1 bits (100), Expect = 3e-04
Identities = 52/194 (26%), Positives = 67/194 (34%), Gaps = 14/194 (7%)
Query: 104 GTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGAS-----PRRLPGGRGPAAAFAV 158
GT P P + A LGP K + Q GS S P+ L G A
Sbjct: 347 GTVKPPVQPPGTTKPPAQPLGPAKPPAQ---QTGSEKPSSEQPGPKALAQPPGVGKTPAQ 403
Query: 159 EPGTGQRPRNTSLAQASRSGTVPGL--PPASLQPLRVPYFAP-PGPHDPTSRGPGRLLTR 215
+PG +P + PGL P + P + P P PG GPG+ +
Sbjct: 404 QPGPA-KPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQ 462
Query: 216 EPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDPERCPGGPS 275
+ K P LP P P PP +A PP + P + P P P PS
Sbjct: 463 QTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPG--PAKPS 520
Query: 276 RGPGHGTHAHSELP 289
T S+ P
Sbjct: 521 PQQPGSTKPPSQQP 534
Score = 40.0 bits (92), Expect = 0.003
Identities = 52/208 (25%), Positives = 74/208 (35%), Gaps = 40/208 (19%)
Query: 103 GGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGT 162
G + P P P P G A + A P P G A +PGT
Sbjct: 291 GESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGL--TKPLAQQPGT 348
Query: 163 GQ---RPRNTSLAQASRSGTVPGLPPA---------SLQPLRVPYFAPPGPHDPTSRGPG 210
+ +P T+ A G P PPA S QP PPG ++ PG
Sbjct: 349 VKPPVQPPGTTKPPAQPLG--PAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPG 406
Query: 211 RLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAP-------PGP-------------NAAA 250
+PP++++ P PL + + +P P P PGP +A
Sbjct: 407 ---PAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQ 463
Query: 251 HPPLRPPRARLQDPVDPERCPGGPSRGP 278
P +PP ++L P P GP++ P
Sbjct: 464 TGPTKPP-SQLPGPAKPPPQQPGPAKPP 490
Score = 37.4 bits (85), Expect = 0.018
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 16/74 (21%)
Query: 185 PASLQPLRVPYFAP-PGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAP 243
PAS P P + P P R ++ +PP PPP PPPPP P
Sbjct: 2372 PASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPP----PPP-----------PPPPPPP 2416
Query: 244 PGPNAAAHPPLRPP 257
P P PPL PP
Sbjct: 2417 PPPPPPPPPPLPPP 2430
Score = 34.7 bits (78), Expect = 0.11
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 21/114 (18%)
Query: 173 QASRSGTVPGLPPASL------QPLRVPYFAPP---GPHDPTSRGPGRLLTREPPSRKLP 223
++S S TV PP+S+ + L YF G P S+ P + P LP
Sbjct: 2332 KSSLSETVFDHPPSSVIALPMKEQLSTTYFTSGETFGQEKPASQLP----SGSPSVSSLP 2387
Query: 224 P-PLPLCRSRWV-------LAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDPER 269
P P RS + PPPPP PP P PP PP + + P++
Sbjct: 2388 AKPRPFFRSSSLDISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPTILPKK 2441
Score = 29.6 bits (65), Expect = 3.7
Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 176 RSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRS--RW 233
+ P PP S P + APP P P + T+ P + KL P + R
Sbjct: 965 KQAPAPSQPPTSQGPPKSTGQAPPA---PAKSIPVKKETKAPAAEKLEPKAEQAPTVKRT 1021
Query: 234 VLAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDPE-RCP 271
PPP + A P +L+ PE CP
Sbjct: 1022 ETEKKPPPIKDSKSLTAEPQKAVLPTKLEKSPKPESTCP 1060
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 52.0 bits (123), Expect = 7e-07
Identities = 56/217 (25%), Positives = 78/217 (35%), Gaps = 30/217 (13%)
Query: 58 PGTQRGVREVGSPTRDQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQ 117
PGT + + P + + GS + +PG Q G G Q PGP P
Sbjct: 356 PGTTKPPAQPLGPAKPPAQQTGSEKPSSE----QPGPKALAQPPGVGKTPAQQPGPAKPP 411
Query: 118 ALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRP-RNTSLAQASR 176
+ G L SP + PG P +PG G+ P + + S
Sbjct: 412 TQ-------QVGTPKPLAQQPGLQSPAKAPG---PTKTPVQQPGPGKIPAQQAGPGKTSA 461
Query: 177 SGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPG--RLLTREPPSRKLPPPLPLCRSRWV 234
T P PP+ L P PGP P + PG + +++P S K PP P
Sbjct: 462 QQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQP------- 514
Query: 235 LAPPPPPAPPGPNAAAHPPLRP----PRARLQDPVDP 267
P P+P P + P +P P A+ P P
Sbjct: 515 --GPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKP 549
Score = 46.6 bits (109), Expect = 3e-05
Identities = 48/190 (25%), Positives = 69/190 (36%), Gaps = 21/190 (11%)
Query: 104 GTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTG 163
GTG P PQ + L + R + + P P+ +P G
Sbjct: 253 GTGKPIQGPTQTPQTDHAKLPLQRDASRPQTKQADIVRGESVKPSLPSPSKPPIQQPTPG 312
Query: 164 QRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLP 223
+ P + S+ G P PPA L P PG P + PG T +PP++ L
Sbjct: 313 KPPAQQPGHEKSQPG--PAKPPAQPSGLTKPLAQQPGTVKPPVQPPG---TTKPPAQPLG 367
Query: 224 PPLPLCRSRWVLAPPPPPAPPGPNAAAHP------------PLRPPRARLQDPVDPERCP 271
P P + + P PGP A A P P +PP ++ P + P
Sbjct: 368 PAKPPAQQTG--SEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQP 425
Query: 272 G--GPSRGPG 279
G P++ PG
Sbjct: 426 GLQSPAKAPG 435
Score = 43.1 bits (100), Expect = 3e-04
Identities = 52/194 (26%), Positives = 67/194 (34%), Gaps = 14/194 (7%)
Query: 104 GTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGAS-----PRRLPGGRGPAAAFAV 158
GT P P + A LGP K + Q GS S P+ L G A
Sbjct: 347 GTVKPPVQPPGTTKPPAQPLGPAKPPAQ---QTGSEKPSSEQPGPKALAQPPGVGKTPAQ 403
Query: 159 EPGTGQRPRNTSLAQASRSGTVPGL--PPASLQPLRVPYFAP-PGPHDPTSRGPGRLLTR 215
+PG +P + PGL P + P + P P PG GPG+ +
Sbjct: 404 QPGPA-KPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQ 462
Query: 216 EPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDPERCPGGPS 275
+ K P LP P P PP +A PP + P + P P P PS
Sbjct: 463 QTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPG--PAKPS 520
Query: 276 RGPGHGTHAHSELP 289
T S+ P
Sbjct: 521 PQQPGSTKPPSQQP 534
Score = 40.0 bits (92), Expect = 0.003
Identities = 52/208 (25%), Positives = 74/208 (35%), Gaps = 40/208 (19%)
Query: 103 GGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGT 162
G + P P P P G A + A P P G A +PGT
Sbjct: 291 GESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGL--TKPLAQQPGT 348
Query: 163 GQ---RPRNTSLAQASRSGTVPGLPPA---------SLQPLRVPYFAPPGPHDPTSRGPG 210
+ +P T+ A G P PPA S QP PPG ++ PG
Sbjct: 349 VKPPVQPPGTTKPPAQPLG--PAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPG 406
Query: 211 RLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAP-------PGP-------------NAAA 250
+PP++++ P PL + + +P P P PGP +A
Sbjct: 407 ---PAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQ 463
Query: 251 HPPLRPPRARLQDPVDPERCPGGPSRGP 278
P +PP ++L P P GP++ P
Sbjct: 464 TGPTKPP-SQLPGPAKPPPQQPGPAKPP 490
Score = 37.4 bits (85), Expect = 0.018
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 16/74 (21%)
Query: 185 PASLQPLRVPYFAP-PGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAP 243
PAS P P + P P R ++ +PP PPP PPPPP P
Sbjct: 2372 PASQLPSGSPSVSSLPAKPRPFFRSSSLDISAQPP----PPP-----------PPPPPPP 2416
Query: 244 PGPNAAAHPPLRPP 257
P P PPL PP
Sbjct: 2417 PPPPPPPPPPLPPP 2430
Score = 34.7 bits (78), Expect = 0.11
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 21/114 (18%)
Query: 173 QASRSGTVPGLPPASL------QPLRVPYFAPP---GPHDPTSRGPGRLLTREPPSRKLP 223
++S S TV PP+S+ + L YF G P S+ P + P LP
Sbjct: 2332 KSSLSETVFDHPPSSVIALPMKEQLSTTYFTSGETFGQEKPASQLP----SGSPSVSSLP 2387
Query: 224 P-PLPLCRSRWV-------LAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDPER 269
P P RS + PPPPP PP P PP PP + + P++
Sbjct: 2388 AKPRPFFRSSSLDISAQPPPPPPPPPPPPPPPPPPPPPPLPPPTSPKPTILPKK 2441
Score = 29.6 bits (65), Expect = 3.7
Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 176 RSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRS--RW 233
+ P PP S P + APP P P + T+ P + KL P + R
Sbjct: 965 KQAPAPSQPPTSQGPPKSTGQAPPA---PAKSIPVKKETKAPAAEKLEPKAEQAPTVKRT 1021
Query: 234 VLAPPPPPAPPGPNAAAHPPLRPPRARLQDPVDPE-RCP 271
PPP + A P +L+ PE CP
Sbjct: 1022 ETEKKPPPIKDSKSLTAEPQKAVLPTKLEKSPKPESTCP 1060
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 51.6 bits (122), Expect = 9e-07
Identities = 62/210 (29%), Positives = 76/210 (36%), Gaps = 35/210 (16%)
Query: 51 QRGRNGAPGTQRGVREVGSPTRDQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQS 110
+ GR GAPG + GSP RD GS + RG E G G G G P +
Sbjct: 1011 ESGREGAPGAE------GSPGRD-----GSPGAKGDRG--ETGPAGPP----GAPGAPGA 1053
Query: 111 PGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTS 170
PGP P GK+G R G + A P G RGPA G+
Sbjct: 1054 PGPVGPA--------GKSGDRGET-GPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGD 1104
Query: 171 LAQASRSGTV-----PGLPPASLQPLRVPYFAPPGPHDP--TSRGPGRLLTREPPSRKLP 223
G PG P + + P GP P ++ PG+ P +
Sbjct: 1105 RGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPG-PIG 1163
Query: 224 PPLPLCRSRWVLAPPPPPAPPGPNAAAHPP 253
PP P R+ P PP PPGP PP
Sbjct: 1164 PPGPRGRTGDA-GPVGPPGPPGPPGPPGPP 1192
Score = 50.1 bits (118), Expect = 3e-06
Identities = 78/265 (29%), Positives = 92/265 (34%), Gaps = 51/265 (19%)
Query: 52 RGRNGAPGTQRGVREVGSPTRDQEIRAGSSCG----RAARGFPEPGRGGKTQEWGGGTGT 107
RG NGAPG + G+P A G R A G P P +G + G G
Sbjct: 697 RGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGP-KGDRGD--AGPKGA 753
Query: 108 PQSPGPCAPQALASLLGP-GKAGCRA-RLQGGSSG-ASP---RRLPGGRGPA-----AAF 156
SPG + L +GP G AG + + G SG A P R PG RG A F
Sbjct: 754 DGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGF 813
Query: 157 AVEPGT-GQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPT---------- 205
A PG GQ A G PP P PPGP
Sbjct: 814 AGPPGADGQPGAKGEPGDAGAKGDAG--PPGPAGPA-----GPPGPIGNVGAPGAKGARG 866
Query: 206 SRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAP------PGPNAAAHPPLRPPRA 259
S GP + ++ PP P + PP PP P GP P RP
Sbjct: 867 SAGPPGATGFPGAAGRVGPPGPSGNA----GPPGPPGPAGKEGGKGPRGETGPAGRPGEV 922
Query: 260 RLQDPVDP---ERCPG--GPSRGPG 279
P P + PG GP+ PG
Sbjct: 923 GPPGPPGPAGEKGSPGADGPAGAPG 947
Score = 45.1 bits (105), Expect = 8e-05
Identities = 75/266 (28%), Positives = 82/266 (30%), Gaps = 31/266 (11%)
Query: 53 GRNGAPGTQRGVREVGSPTRDQEIRAGSSCGRAARGFP-EPGRGGKTQEWG-----GGTG 106
G +GA G G P E A G RG P E GR G G G TG
Sbjct: 272 GLDGAKGDAGPAGPKGEPGSPGENGAPGQMG--PRGLPGERGRPGAPGPAGARGNDGATG 329
Query: 107 TPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGP-----AAAFAVEPG 161
PGP P G A A QG P+ + G GP AA A PG
Sbjct: 330 AAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPG 389
Query: 162 TGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHD-------PTSRGPGRLLT 214
+P A PG P A PPGP P S+G
Sbjct: 390 ADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKG 449
Query: 215 REPPSRKLPPPLPLCR--SRWVLAPPPP---PAPPGPNAAAHPPLRPPRARLQDPVDP-- 267
P PP P R P P P PPG P + P P
Sbjct: 450 EPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAG 509
Query: 268 ER---CPGGPSRGPGH-GTHAHSELP 289
ER P GP PG G + LP
Sbjct: 510 ERGSPGPAGPKGSPGEAGRPGEAGLP 535
Score = 42.4 bits (98), Expect = 5e-04
Identities = 56/200 (28%), Positives = 62/200 (31%), Gaps = 24/200 (12%)
Query: 53 GRNGAPGTQRGVREVGSPTRDQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPG 112
GR G PG G P AG G+ RG E G G+ G G P PG
Sbjct: 881 GRVGPPGPSGNAGPPGPPGP-----AGKEGGKGPRG--ETGPAGRP----GEVGPPGPPG 929
Query: 113 PCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLA 172
P + GP A QG + LPG RG F PG P +
Sbjct: 930 PAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRG-ERGFPGLPGPSGEPGKQGPS 988
Query: 173 QASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSR 232
AS PG P+ P A P PG P R P R
Sbjct: 989 GASGERGPPG-------PMGPPGLAGPPGESGREGAPG---AEGSPGRDGSPGAK--GDR 1036
Query: 233 WVLAPPPPPAPPGPNAAAHP 252
P PP PG A P
Sbjct: 1037 GETGPAGPPGAPGAPGAPGP 1056
Score = 38.1 bits (87), Expect = 0.010
Identities = 66/232 (28%), Positives = 76/232 (32%), Gaps = 72/232 (31%)
Query: 51 QRGRNGAPGTQRGVREVGSPTRDQEIRAGSSCGRAARGFP-EPGRGGKTQEWG--GGTGT 107
+RG G G + E G P AG + G P PG GKT G G G
Sbjct: 510 ERGSPGPAGPKGSPGEAGRPGE-----AGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGR 564
Query: 108 PQSPGPCAPQALASLLG----------PGKAGCR-----------------ARLQGGSSG 140
P PGP + A ++G PGKAG R A QG
Sbjct: 565 PGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGP 624
Query: 141 ASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLP-PASLQPLRVPYFAPP 199
A P G +GPA + PG GLP PA PP
Sbjct: 625 AGPAGERGEQGPAGS----PG------------------FQGLPGPA----------GPP 652
Query: 200 G-PHDPTSRG-PGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAA 249
G P +G PG L P + P R V PP P P G N A
Sbjct: 653 GEAGKPGEQGVPGDLGAPGPSGARGERGFP--GERGVQGPPGPAGPRGANGA 702
Score = 37.4 bits (85), Expect = 0.018
Identities = 40/152 (26%), Positives = 49/152 (32%), Gaps = 23/152 (15%)
Query: 137 GSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYF 196
GS + + G GP TG R R G +PG P P
Sbjct: 98 GSESPTDQETTGVEGPKG------DTGPRGPRGPAGPPGRDG-IPGQPGLPGPP------ 144
Query: 197 APPGPHDPTSRG----PGRLLTREPPSR---KLPPPLPLCRSRWVLAPPPPPAPPGPNAA 249
PPGP P G P + S +P P+ R + P PP PGP
Sbjct: 145 GPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGL---PGPPGAPGPQGF 201
Query: 250 AHPPLRPPRARLQDPVDPERCPGGPSRGPGHG 281
PP P P+ P PG P + G
Sbjct: 202 QGPPGEPGEPGASGPMGPRGPPGPPGKNGDDG 233
Score = 37.0 bits (84), Expect = 0.023
Identities = 56/205 (27%), Positives = 67/205 (32%), Gaps = 44/205 (21%)
Query: 53 GRNGAPGTQRGVREVGSPTRDQEIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPG 112
G G PG Q ++G+P G S R RGFP G G PG
Sbjct: 653 GEAGKPGEQGVPGDLGAP--------GPSGARGERGFP------------GERGVQGPPG 692
Query: 113 PCAPQALASLLGPGKAGCRARLQG--GSSGASPRR-LPGGRGPAAAFAVEPGTGQRPRNT 169
P P+ G A A G GS GA + +PG RG A + G
Sbjct: 693 PAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKG 752
Query: 170 SLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHD-PTSRGPGRLLTREPPSRKLPPPLPL 228
+ + G V GL PPGP P +G PS P
Sbjct: 753 ADGSPGKDG-VRGLTGP---------IGPPGPAGAPGDKG------ESGPSGPAGPT--- 793
Query: 229 CRSRWVLAPPPPPAPPGPNAAAHPP 253
+R P PPGP A PP
Sbjct: 794 -GARGAPGDRGEPGPPGPAGFAGPP 817
Score = 36.6 bits (83), Expect = 0.030
Identities = 54/211 (25%), Positives = 69/211 (32%), Gaps = 28/211 (13%)
Query: 75 EIRAGSSCGRAARGFPEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARL 134
E+ G C G P QE G G GP P+ A PG+ G +
Sbjct: 85 EVPEGECCPVCPDGSESP----TDQETTGVEGPKGDTGPRGPRGPAG--PPGRDGIPGQ- 137
Query: 135 QGGSSGASPRRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVP 194
G P PG G FA + G ++T +VPG P P +P
Sbjct: 138 PGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTG------GISVPG-PMGPSGPRGLP 190
Query: 195 YFAPPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPL 254
PPG PG + PP P + + P PP PPG N
Sbjct: 191 --GPPG-------APGPQGFQGPPGEPGEPG-----ASGPMGPRGPPGPPGKNGDDGEAG 236
Query: 255 RPPRARLQDPVDPERCPGGPSRGPGHGTHAH 285
+P R + P P+ G P G H
Sbjct: 237 KPGRPGERGPPGPQGARGLPGTAGLPGMKGH 267
Score = 34.7 bits (78), Expect = 0.11
Identities = 70/229 (30%), Positives = 81/229 (35%), Gaps = 41/229 (17%)
Query: 53 GRNGAPGTQRGVREVGSPTRDQEIRAGSSCGRAARGFPEPGRGGKTQEWG--GGTGTPQS 110
G GAPG RG E G P AG + A G +PG G+ + G G G P
Sbjct: 794 GARGAPG-DRG--EPGPPGP-----AGFAGPPGADG--QPGAKGEPGDAGAKGDAGPPGP 843
Query: 111 PGPCAPQALASLLG-PGKAGCRARL----QGGSSGASPRRLPGGRGPAAAFAVEPGT--- 162
GP P +G PG G R G GA+ R P G A PG
Sbjct: 844 AGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGK 903
Query: 163 --GQRPRNTSLAQASRSGTV--PGLP--------PASLQPLRVPYFAPPGPHDPTS-RG- 208
G+ PR + A R G V PG P P + P P PGP RG
Sbjct: 904 EGGKGPRGET-GPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAP--GTPGPQGIAGQRGV 960
Query: 209 ---PGRLLTREPPSRKLPPPLPLCRS-RWVLAPPPPPAPPGPNAAAHPP 253
PG+ R P P P + PP P GP A PP
Sbjct: 961 VGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPP 1009
>gi|134244285 Notch homolog 3 [Homo sapiens]
Length = 2321
Score = 51.6 bits (122), Expect = 9e-07
Identities = 69/221 (31%), Positives = 86/221 (38%), Gaps = 37/221 (16%)
Query: 105 TGTPQSPGP-------CAPQALASLLGPGKAGCR-ARLQGGSSGASPRRLPGGRGPAAAF 156
+G PGP C P A L ++G + +R G +G P+ P GRG
Sbjct: 2028 SGPRSPPGPHGLGPLLCPPGAFLPGLKAAQSGSKKSRRPPGKAGLGPQG-PRGRGKKLTL 2086
Query: 157 AVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQ--PLRVPYFAPPGPHDPTSR--GPGRL 212
A S + S G PPAS PL PY A ++ GPGR
Sbjct: 2087 ACPGPLADSSVTLSPVDSLDSPRPFGGPPASPGGFPLEGPYAAATATAVSLAQLGGPGRA 2146
Query: 213 -LTREPPSRKL-------PPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRARLQ-- 262
L R+PP + P +PL +R PPPAPPGP+ PL P L
Sbjct: 2147 GLGRQPPGGCVLSLGLLNPVAVPLDWARL-----PPPAPPGPSFLL--PLAPGPQLLNPG 2199
Query: 263 DPVDPERCPGGPSRGPGHGTH-----AHSELPTC--TRLPS 296
PV P+ P PGHG AHS P R+PS
Sbjct: 2200 TPVSPQERPPPYLAVPGHGEEYPAAGAHSSPPKARFLRVPS 2240
Score = 32.0 bits (71), Expect = 0.74
Identities = 45/170 (26%), Positives = 55/170 (32%), Gaps = 32/170 (18%)
Query: 90 PEPGRGGKTQEWGGGTGTPQSPGPCAPQALASLLGPGKAGCRARLQGG--------SSGA 141
P P G G P + +LA L GPG+AG + GG + A
Sbjct: 2108 PRPFGGPPASPGGFPLEGPYAAATATAVSLAQLGGPGRAGLGRQPPGGCVLSLGLLNPVA 2167
Query: 142 SP---RRLPGGRGPAAAFAVEPGTGQRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAP 198
P RLP P +F + G + N PG P S Q PY A
Sbjct: 2168 VPLDWARLPPPAPPGPSFLLPLAPGPQLLN------------PG-TPVSPQERPPPYLAV 2214
Query: 199 PGPHD------PTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPPA 242
PG + S P R P P P W A P PP+
Sbjct: 2215 PGHGEEYPAAGAHSSPPKARFLRVPSEHPYLTPSPESPEHW--ASPSPPS 2262
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 51.6 bits (122), Expect = 9e-07
Identities = 63/221 (28%), Positives = 74/221 (33%), Gaps = 45/221 (20%)
Query: 65 REVGSPTRDQEIRAGSSCGRAAR---GFPEPGRGGKTQEWGGGTGTPQSPGPCAPQALAS 121
R+ PT A + RAA G P P + + P + GP + AS
Sbjct: 162 RDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPR--------PPTEGPRKSVSSAS 213
Query: 122 ---LLGPGKAGCRARLQGG----------SSGASPRRLPGGRGPAAAFAVE-PGTGQRPR 167
P A R GG SS A+P P GP+A P +P+
Sbjct: 214 EHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPK 273
Query: 168 NTSL-------AQASRSGTVPGLPPASLQPLRVPYFAPPG----PHDPTSRGPGRLLTRE 216
L R P L P S PL P +P G P P L
Sbjct: 274 PKGLQALRPPQVTPPRKDAAPALGPLSSSPLATP--SPSGTKARPVPPPDNAATPLPATL 331
Query: 217 PPSRKLPPPLPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPP 257
PPS L PLPL APP P APP PP PP
Sbjct: 332 PPSPPLATPLPL-------APPSPSAPPSLQTLPSPPATPP 365
Score = 41.2 bits (95), Expect = 0.001
Identities = 58/205 (28%), Positives = 68/205 (33%), Gaps = 37/205 (18%)
Query: 105 TGTPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQ 164
T PQ+P P A L P S SP P R P A
Sbjct: 721 TPPPQAPPPLAAPPLQVPPSPP----------ASPPMSPSATPPPRVPPLLAAPPLQVPP 770
Query: 165 RPRNTSLAQASRSGTVPGLPPA----SLQPLRVPYFAPPG--PHDPTSRGPGRLLTREPP 218
P SL + + P PPA LQ L P + PG P P++ P L PP
Sbjct: 771 SPP-ASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPP 829
Query: 219 SRKLPPPL--PLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPRARLQ-----------DPV 265
+ PP L PL + PP PPA P A PP P + P
Sbjct: 830 --QAPPVLAAPLLQ-----VPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPP 882
Query: 266 DPERCPGGPSRGPGHGTHAHSELPT 290
P R P GP H+ S T
Sbjct: 883 PPSRSPSSTLSGPDLAGHSSSATST 907
Score = 40.0 bits (92), Expect = 0.003
Identities = 49/180 (27%), Positives = 61/180 (33%), Gaps = 21/180 (11%)
Query: 107 TPQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFAVEPGTGQ-- 164
TP S PQA +L P G + + P+ P P P
Sbjct: 583 TPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPL 642
Query: 165 RPRNTSLAQASRSGTV-----PGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPPS 219
P T QA + V P PP S P++ P+ P P S P ++ PPS
Sbjct: 643 SPLATPSPQAPNALAVHLLQAPFSPPPS-PPVQAPFSPPASPPVSPSATPP---SQAPPS 698
Query: 220 RKLPPPLPLCRSRWVLAPPPPPA-PPGPNAAAHPPLRPPRARLQDPVDPERCPGGPSRGP 278
PP + PP PPA PP +A PP PP P P P P
Sbjct: 699 LAAPP---------LQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSP 749
Score = 37.7 bits (86), Expect = 0.013
Identities = 33/107 (30%), Positives = 38/107 (35%), Gaps = 8/107 (7%)
Query: 180 VPGLPPASLQ----PLRVPYF-APPGPHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWV 234
+P L P LQ PL P+ PP P + P LT PP P ++
Sbjct: 538 LPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPA 597
Query: 235 LAPPPPPAPPGP---NAAAHPPLRPPRARLQDPVDPERCPGGPSRGP 278
LA PP P P A PP PP L P P P P
Sbjct: 598 LASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSP 644
Score = 35.4 bits (80), Expect = 0.067
Identities = 61/231 (26%), Positives = 76/231 (32%), Gaps = 42/231 (18%)
Query: 106 GTPQSPGPCAPQALASLLGPGKAGCR--ARLQGGSSGASPRRLPGGRGPAAAFAVEPGTG 163
G+P+ P P P AL L G G + A GG GA+ GP + G
Sbjct: 31 GSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRS------AG 84
Query: 164 QRPRNTSLAQASRSGTVPGLPPASLQPLRVPYFAPPGPHDPTSRGPGRLLTREPP----S 219
RN ASR PPAS + R P P +S G TR P
Sbjct: 85 TSSRN----PASR-------PPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKG 133
Query: 220 RKLPPPLPLCRSRWVLAPP--------------PPPAPPGPNAAAHPPLRPPRARLQDPV 265
++ + R + AP P P P P A L P
Sbjct: 134 LRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPA 193
Query: 266 DPERCPGGPSRGPGHGTHAHSELPTCTRLPSVVFRASGRPYPCFLLCRPSS 316
P P P+ GP + SE T P+ A RP L RP+S
Sbjct: 194 -PSARPRPPTEGPRKSVSSASEHSTTEPSPA----ARRRPSAGGGLQRPAS 239
Score = 35.4 bits (80), Expect = 0.067
Identities = 50/170 (29%), Positives = 65/170 (38%), Gaps = 25/170 (14%)
Query: 108 PQSPGPCAPQALASLLGPGKAGCRARLQGGSSGASPRRLPGGRGPAAAFA-VEPGTGQRP 166
P S P +P A L P + L S SP P P A + + + Q P
Sbjct: 447 PASTPPDSPPLQAPLSLPASPPLQTSL---SPAVSPLSSPLTIHPLQALSSLASHSPQAP 503
Query: 167 RNTSLA---QASRSGTVPGL--PPASLQ--PLR-VPYFAPPGPHDPTSRGPGRLLTREPP 218
++ + + S P L PPASL PL +P APP P L T
Sbjct: 504 LSSLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPSLAPP----PLQTASAPLTTPHLE 559
Query: 219 SRKLPPPLPLCRSRWVLAPPPP---PAPPGPNAAAHPPLRPPRARLQDPV 265
+ P P PL APP P P P P++ A PP + P A P+
Sbjct: 560 TPPCPAPCPL------QAPPSPLTTPPPETPSSIATPPPQAPPALASPPL 603
Score = 35.0 bits (79), Expect = 0.087
Identities = 41/125 (32%), Positives = 46/125 (36%), Gaps = 17/125 (13%)
Query: 175 SRSGTVPGLPPASLQ--PLRVPYFAPPGPHDPTSRGPGRLLTREPPSRKLP---PPLPLC 229
S S T P P SL PL+VP P P S P PP P PPL +
Sbjct: 686 SPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATP-------PPQAPPPLAAPPLQVP 738
Query: 230 RSRWVLAPPPPPAPPGPNA---AAHPPLR-PPRARLQDPVDPERCPGGPSRGPGHGTHAH 285
S P P A P P A PPL+ PP P+ P P P P T
Sbjct: 739 PSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKP-PPQAPPALATPPL 797
Query: 286 SELPT 290
LP+
Sbjct: 798 QALPS 802
Score = 30.8 bits (68), Expect = 1.6
Identities = 35/116 (30%), Positives = 40/116 (34%), Gaps = 18/116 (15%)
Query: 204 PTSRGPGRLLTREPPSRKLPPP-----LPLCRSRWVLAPPPPPAPPGPNAAAHPPLRPPR 258
P +R PG L R P S + PPP L + + + P G A P PR
Sbjct: 17 PAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPR 76
Query: 259 ARLQDPVDPERCPGGPSRGP-------GHGTHAHSELPTCTRLPSVVFRASGRPYP 307
A P R G SR P G G A T S RASG P
Sbjct: 77 A------GPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRP 126
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.138 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,783,057
Number of Sequences: 37866
Number of extensions: 1685112
Number of successful extensions: 21174
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 1855
Number of HSP's that attempted gapping in prelim test: 8896
Number of HSP's gapped (non-prelim): 7639
length of query: 316
length of database: 18,247,518
effective HSP length: 102
effective length of query: 214
effective length of database: 14,385,186
effective search space: 3078429804
effective search space used: 3078429804
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.