Guide to the Human Genome
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Name: LOC100294086 Sequence: fasta or formatted (262aa) NCBI GI: 239509062
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         26           3
 C cysteine            3.4          9           1
 D aspartate           3.4          9           2
 E glutamate           4.6         12           2
 F phenylalanine       1.5          4           1
 G glycine            11.5         30           2
 H histidine           2.7          7           1
 I isoleucine          1.9          5           1
 K lysine              0.4          1           1
 L leucine            14.5         38           3
 M methionine          0.4          1           1
 N asparagine          1.1          3           1
 P proline            15.6         41           3
 Q glutamine           6.5         17           2
 R arginine            4.2         11           1
 S serine              7.6         20           2
 T threonine           2.7          7           1
 V valine              6.1         16           2
 W tryptophan          0.8          2           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293771          0.987   PREDICTED: hypothetical protein 
LOC100290924          0.987   PREDICTED: hypothetical protein XP_002346979 
SLC16A2               0.042   solute carrier family 16, member 2 
AATK                  0.042   apoptosis-associated tyrosine kinase 
PCLO                  0.036   piccolo isoform 2 
PCLO                  0.036   piccolo isoform 1 
SRCAP                 0.035   Snf2-related CBP activator protein 
HS3ST4                0.035   heparan sulfate D-glucosaminyl 3-O-sulfotransferase...
POU6F2                0.035   POU domain, class 6, transcription factor 2 
RCOR2                 0.035   REST corepressor 2 
ZFHX3                 0.033   AT-binding transcription factor 1 
MED25                 0.033   mediator complex subunit 25 
MNT                   0.033   MAX binding protein 
WNK2                  0.033   WNK lysine deficient protein kinase 2 
PRR12                 0.033   proline rich 12 
KIAA1602              0.033   hypothetical protein LOC57701 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
ZFC3H1                0.031   proline/serine-rich coiled-coil 2 
NACAD                 0.029   NAC alpha domain containing 
NACAD                 0.029   PREDICTED: NAC alpha domain containing 
NACAD                 0.029   PREDICTED: NAC alpha domain containing 
NACAD                 0.029   PREDICTED: NAC alpha domain containing 
NACAD                 0.029   PREDICTED: NAC alpha domain containing 
NFATC4                0.029   nuclear factor of activated T-cells, cytoplasmic, c...
FOXL2                 0.029   forkhead box L2 
LOC100292184          0.029   PREDICTED: hypothetical protein 
LOC100292727          0.029   PREDICTED: hypothetical protein 
MAPK1IP1L             0.029   MAPK-interacting and spindle-stabilizing protein [Ho...
MYO15A                0.027   myosin XV 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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