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Search of human proteins with 239508788
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239508788 PREDICTED: hypothetical protein [Homo sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754537 PREDICTED: hypothetical protein [Homo sapiens] 256 2e-69
gi|239749102 PREDICTED: hypothetical protein XP_002346913 [Homo ... 256 2e-69
gi|239743131 PREDICTED: hypothetical protein XP_002342743 [Homo ... 256 2e-69
gi|239508788 PREDICTED: hypothetical protein [Homo sapiens] 256 2e-69
gi|23308693 zinc finger and BTB domain containing 9 [Homo sapiens] 33 0.069
gi|41393599 coproporphyrinogen oxidase [Homo sapiens] 32 0.12
gi|238859557 regulatory factor X1 [Homo sapiens] 30 0.34
gi|239753715 PREDICTED: hypothetical protein [Homo sapiens] 30 0.34
gi|239748261 PREDICTED: hypothetical protein [Homo sapiens] 30 0.34
gi|239742162 PREDICTED: hypothetical protein [Homo sapiens] 30 0.34
gi|13540513 oxysterol binding protein 2 isoform a [Homo sapiens] 30 0.45
gi|61699226 pulmonary surfactant-associated protein D precursor ... 30 0.58
gi|7706435 headcase [Homo sapiens] 30 0.58
gi|239748046 PREDICTED: hypothetical protein XP_002346501 [Homo ... 29 0.76
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 29 1.00
gi|169213772 PREDICTED: similar to actin alpha 1 skeletal muscle... 28 1.3
gi|169214234 PREDICTED: similar to actin alpha 1 skeletal muscle... 28 1.3
gi|239746153 PREDICTED: similar to cytoskeletal beta actin [Homo... 28 1.3
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 28 1.3
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 28 1.3
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 28 1.3
gi|194018511 keratin 77 [Homo sapiens] 28 1.7
gi|169171347 PREDICTED: hypothetical protein [Homo sapiens] 28 1.7
gi|169172209 PREDICTED: hypothetical protein [Homo sapiens] 28 1.7
gi|169170953 PREDICTED: hypothetical protein [Homo sapiens] 28 1.7
gi|239508753 PREDICTED: hypothetical protein [Homo sapiens] 28 1.7
gi|54112401 calmodulin-binding transcription activator 1 [Homo s... 28 1.7
gi|28872814 semaphorin 4G [Homo sapiens] 28 1.7
gi|221139921 EF-hand calcium binding domain 8 [Homo sapiens] 28 2.2
gi|110227617 centaurin, gamma 3 isoform b [Homo sapiens] 28 2.2
>gi|239754537 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 256 bits (655), Expect = 2e-69
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MHQKVSIGLKEKERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCC 60
MHQKVSIGLKEKERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCC
Sbjct: 1 MHQKVSIGLKEKERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCC 60
Query: 61 LGPGGVGGACLGPTHSLEPSKEQQIMDTAETEAALSVPGQAKALSCQLPRVILSSRHGWG 120
LGPGGVGGACLGPTHSLEPSKEQQIMDTAETEAALSVPGQAKALSCQLPRVILSSRHGWG
Sbjct: 61 LGPGGVGGACLGPTHSLEPSKEQQIMDTAETEAALSVPGQAKALSCQLPRVILSSRHGWG 120
Query: 121 PP 122
PP
Sbjct: 121 PP 122
>gi|239749102 PREDICTED: hypothetical protein XP_002346913 [Homo
sapiens]
Length = 122
Score = 256 bits (655), Expect = 2e-69
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MHQKVSIGLKEKERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCC 60
MHQKVSIGLKEKERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCC
Sbjct: 1 MHQKVSIGLKEKERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCC 60
Query: 61 LGPGGVGGACLGPTHSLEPSKEQQIMDTAETEAALSVPGQAKALSCQLPRVILSSRHGWG 120
LGPGGVGGACLGPTHSLEPSKEQQIMDTAETEAALSVPGQAKALSCQLPRVILSSRHGWG
Sbjct: 61 LGPGGVGGACLGPTHSLEPSKEQQIMDTAETEAALSVPGQAKALSCQLPRVILSSRHGWG 120
Query: 121 PP 122
PP
Sbjct: 121 PP 122
>gi|239743131 PREDICTED: hypothetical protein XP_002342743 [Homo
sapiens]
Length = 122
Score = 256 bits (655), Expect = 2e-69
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MHQKVSIGLKEKERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCC 60
MHQKVSIGLKEKERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCC
Sbjct: 1 MHQKVSIGLKEKERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCC 60
Query: 61 LGPGGVGGACLGPTHSLEPSKEQQIMDTAETEAALSVPGQAKALSCQLPRVILSSRHGWG 120
LGPGGVGGACLGPTHSLEPSKEQQIMDTAETEAALSVPGQAKALSCQLPRVILSSRHGWG
Sbjct: 61 LGPGGVGGACLGPTHSLEPSKEQQIMDTAETEAALSVPGQAKALSCQLPRVILSSRHGWG 120
Query: 121 PP 122
PP
Sbjct: 121 PP 122
>gi|239508788 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 256 bits (655), Expect = 2e-69
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MHQKVSIGLKEKERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCC 60
MHQKVSIGLKEKERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCC
Sbjct: 1 MHQKVSIGLKEKERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCC 60
Query: 61 LGPGGVGGACLGPTHSLEPSKEQQIMDTAETEAALSVPGQAKALSCQLPRVILSSRHGWG 120
LGPGGVGGACLGPTHSLEPSKEQQIMDTAETEAALSVPGQAKALSCQLPRVILSSRHGWG
Sbjct: 61 LGPGGVGGACLGPTHSLEPSKEQQIMDTAETEAALSVPGQAKALSCQLPRVILSSRHGWG 120
Query: 121 PP 122
PP
Sbjct: 121 PP 122
>gi|23308693 zinc finger and BTB domain containing 9 [Homo sapiens]
Length = 473
Score = 32.7 bits (73), Expect = 0.069
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 8 GLKEKERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVG 67
G KE+ +V G G G P GGG G SW D G+ G GG G
Sbjct: 305 GAKEETKVFSGGDTEGNGELGFLLPSGPGPTSGGG---GPSWKPVDLHGNEILSGGGGPG 361
Query: 68 GA 69
GA
Sbjct: 362 GA 363
>gi|41393599 coproporphyrinogen oxidase [Homo sapiens]
Length = 454
Score = 32.0 bits (71), Expect = 0.12
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 27 GGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVG 67
GG GPR SQC GGG +W + G R C PG G
Sbjct: 19 GGCGGPRAWSQCGGGGL---RAWSQRSAAG-RVCRPPGPAG 55
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 30.4 bits (67), Expect = 0.34
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 17 GVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVGGACLGPTHS 76
G G + GGGG +G GGG SG++ G+ G +G A +H+
Sbjct: 373 GAGASNSSGGGG-SGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGGYMLGSASQSYSHT 431
Query: 77 --LEPSKEQQIMDTAETEAALSVP 98
P+ Q ++D ET +S+P
Sbjct: 432 TRASPATVQWLLDNYETAEGVSLP 455
>gi|239753715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 167
Score = 30.4 bits (67), Expect = 0.34
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 17 GVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVGGACLGPTHS 76
G G E RG GG G +SQ PG LSG S SV + PG G P
Sbjct: 34 GEGLEEGRGWGG-RGSGSASQRPGAADLSGCSAWQLASVPATLLPSPGLESGDIPSPPLG 92
Query: 77 L-----EPSKEQQIMDTAETEAALSVPGQAK 102
+ + +++ E + S PGQA+
Sbjct: 93 VPGVGARARERRRLWLDGGEEGSESSPGQAE 123
>gi|239748261 PREDICTED: hypothetical protein [Homo sapiens]
Length = 167
Score = 30.4 bits (67), Expect = 0.34
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 17 GVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVGGACLGPTHS 76
G G E RG GG G +SQ PG LSG S SV + PG G P
Sbjct: 34 GEGLEEGRGWGG-RGSGSASQRPGAADLSGCSAWQLASVPATLLPSPGLESGDIPSPPLG 92
Query: 77 L-----EPSKEQQIMDTAETEAALSVPGQAK 102
+ + +++ E + S PGQA+
Sbjct: 93 VPGVGARARERRRLWLDGGEEGSESSPGQAE 123
>gi|239742162 PREDICTED: hypothetical protein [Homo sapiens]
Length = 167
Score = 30.4 bits (67), Expect = 0.34
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 17 GVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVGGACLGPTHS 76
G G E RG GG G +SQ PG LSG S SV + PG G P
Sbjct: 34 GEGLEEGRGWGG-RGSGSASQRPGAADLSGCSAWQLASVPATLLPSPGLESGDIPSPPLG 92
Query: 77 L-----EPSKEQQIMDTAETEAALSVPGQAK 102
+ + +++ E + S PGQA+
Sbjct: 93 VPGVGARARERRRLWLDGGEEGSESSPGQAE 123
>gi|13540513 oxysterol binding protein 2 isoform a [Homo sapiens]
Length = 916
Score = 30.0 bits (66), Expect = 0.45
Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 17 GVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVGGACLGPTHS 76
G G+ S+ G G SS G + AS + +VGS L P L P
Sbjct: 93 GAGQPSELLQGSRPGSESSSGVGAGPFTKAASEPLSRAVGSATFLRPESGSLPALKPLPL 152
Query: 77 LEPSKEQQIMDTAETEAALSVPGQAKALSCQLPRVILSSRHGW 119
L P + A+T + + G S L + L S GW
Sbjct: 153 LRPGQ-------AKTPLGVPMSGTGTTSSAPLALLPLDSFEGW 188
>gi|61699226 pulmonary surfactant-associated protein D precursor
[Homo sapiens]
Length = 375
Score = 29.6 bits (65), Expect = 0.58
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 12 KERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVGGA 69
K V G + G GL GP+ PG + G +T + GS +GP G GA
Sbjct: 144 KGEVGAPGMQGSAGARGLAGPKGERGVPGERGVPG----NTGAAGSAGAMGPQGSPGA 197
>gi|7706435 headcase [Homo sapiens]
Length = 543
Score = 29.6 bits (65), Expect = 0.58
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 4 KVSIGLKEKERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGP 63
K S G ++ +R G E + G G L + GG L+ A+ + G+ G
Sbjct: 5 KNSKGGRKNKRANSSGDEQENGAGALAAAGAAGAAAGGA-LAAAAGCGAAAAGAPGAGGA 63
Query: 64 GGVGGACLGPTHSLEPSKEQQIMDTAETEAALSVP 98
G GGA G ++ + D A+ EA + P
Sbjct: 64 AGAGGAGTGAANAAAAAGAAAAGD-AKNEAPCATP 97
>gi|239748046 PREDICTED: hypothetical protein XP_002346501 [Homo
sapiens]
Length = 411
Score = 29.3 bits (64), Expect = 0.76
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 17 GVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVG-GAC-LGPT 74
G G +RG GGL G S GGG V C+GP G G G C +G +
Sbjct: 186 GPGSAEERGLGGLRGLECSRLGWGGG--------RCVRVLRASCVGPRGPGCGHCQVGSS 237
Query: 75 HSLEPSKEQQIMDTAETEAALSVPGQAKALSC 106
+ +E + + AE P A+A C
Sbjct: 238 SLWQQHEEGSLQEAAEAAECSHQPVGAEARVC 269
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 28.9 bits (63), Expect = 1.00
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 62 GPGGVGGACLGPTHSLEPSKEQQIMDTAETEAALSVPGQAK---ALSCQLPRVILSSRH 117
GPG +GG PTHS K + + +EA +S PG + ++C ++ RH
Sbjct: 168 GPGALGGEPSPPTHSPSRRKSHRGQERGTSEAGIS-PGNSPLQGLINCLKEILVPGPRH 225
>gi|169213772 PREDICTED: similar to actin alpha 1 skeletal muscle
protein [Homo sapiens]
Length = 464
Score = 28.5 bits (62), Expect = 1.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 2 HQKVSIGLKEKERVVGVGRESKRGGGGLTGPRQSS 36
HQ V +G+ +K+ VG +SKRG L P + S
Sbjct: 229 HQGVMVGIGQKDSYVGEDAQSKRGNLTLKYPIEQS 263
>gi|169214234 PREDICTED: similar to actin alpha 1 skeletal muscle
protein [Homo sapiens]
Length = 464
Score = 28.5 bits (62), Expect = 1.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 2 HQKVSIGLKEKERVVGVGRESKRGGGGLTGPRQSS 36
HQ V +G+ +K+ VG +SKRG L P + S
Sbjct: 229 HQGVMVGIGQKDSYVGEDAQSKRGNLTLKYPIEQS 263
>gi|239746153 PREDICTED: similar to cytoskeletal beta actin [Homo
sapiens]
Length = 378
Score = 28.5 bits (62), Expect = 1.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 2 HQKVSIGLKEKERVVGVGRESKRGGGGLTGPRQSS 36
HQ V +G+ +K+ VG +SKRG L P + S
Sbjct: 229 HQGVMVGIGQKDSYVGEDAQSKRGNLTLKYPIEQS 263
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 28.5 bits (62), Expect = 1.3
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 25 GGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVG 67
GGGG G QSS GGG SG + + D G G GG G
Sbjct: 172 GGGGNYGQDQSSMSSGGG--SGGGYGNQDQSGGG---GSGGYG 209
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 28.5 bits (62), Expect = 1.3
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 11/51 (21%)
Query: 3 QKVSIGLKEKERVVGVGRESKRGGGGLTGPRQS-----------SQCPGGG 42
+K + +KEKE+ R+S GG G TGP+++ PGGG
Sbjct: 1876 KKNKLVIKEKEKESQRERDSAEGGEGNTGPKETLPDALKAKEKKELAPGGG 1926
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 28.5 bits (62), Expect = 1.3
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 17 GVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLH 51
G G GGGG GP PGGG L G++ H
Sbjct: 156 GGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSAHPH 190
>gi|194018511 keratin 77 [Homo sapiens]
Length = 578
Score = 28.1 bits (61), Expect = 1.7
Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 7/92 (7%)
Query: 1 MHQKVSIGLKEKERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDS---VGS 57
+ VSI ++ + V G GGGG G GGGY G S+ + G
Sbjct: 481 LQSHVSISVQNSQVSVNGGA----GGGGSYGSGGYGGGSGGGYGGGRSYRGGGARGRSGG 536
Query: 58 RCCLGPGGVGGACLGPTHSLEPSKEQQIMDTA 89
G GG GG+ G S S QI+ T+
Sbjct: 537 GYGSGCGGGGGSYGGSGRSGRGSSRVQIIQTS 568
>gi|169171347 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1128
Score = 28.1 bits (61), Expect = 1.7
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 19 GRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVGGACLGPTHSLE 78
G E R GGG TG + PG VG G G G A G
Sbjct: 430 GEEGVRAGGGGTGEVRGGGSPG-----------RQPVGRAAVTGEAGAGAAGRGAQSVRG 478
Query: 79 PSKEQQIMDTAE 90
P E+++ + A+
Sbjct: 479 PGVERRVAEGAQ 490
>gi|169172209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 28.1 bits (61), Expect = 1.7
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 19 GRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVGGACLGPTHSLE 78
G E R GGG TG + PG VG G G G A G
Sbjct: 103 GEEGVRAGGGGTGEVRGGGSPG-----------RQPVGRAAVTGEAGAGAAGRGAQSVRG 151
Query: 79 PSKEQQIMDTAE 90
P E+++ + A+
Sbjct: 152 PGVERRVAEGAQ 163
>gi|169170953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 28.1 bits (61), Expect = 1.7
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 19 GRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVGGACLGPTHSLE 78
G E R GGG TG + PG VG G G G A G
Sbjct: 103 GEEGVRAGGGGTGEVRGGGSPG-----------RQPVGRAAVTGEAGAGAAGRGAQSVRG 151
Query: 79 PSKEQQIMDTAE 90
P E+++ + A+
Sbjct: 152 PGVERRVAEGAQ 163
>gi|239508753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 28.1 bits (61), Expect = 1.7
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 19 GRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVGGACLGPTHSLE 78
G E R GGG TG + PG VG G G G A G
Sbjct: 103 GEEGVRAGGGGTGEVRGGGSPG-----------RQPVGRAAVTGEAGAGAAGRGAQSVRG 151
Query: 79 PSKEQQIMDTAE 90
P E+++ + A+
Sbjct: 152 PGVERRVAEGAQ 163
>gi|54112401 calmodulin-binding transcription activator 1 [Homo
sapiens]
Length = 1673
Score = 28.1 bits (61), Expect = 1.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 29 LTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVG 67
+TG +Q Q GGG G S ++C G G +G
Sbjct: 993 MTGSQQHKQASGGGSSGGGSGSGNGGSQAQCASGTGALG 1031
>gi|28872814 semaphorin 4G [Homo sapiens]
Length = 843
Score = 28.1 bits (61), Expect = 1.7
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 13/64 (20%)
Query: 8 GLKEKERVVGVGRESKRGGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVG 67
G + + R +GR S+ GG + S QCPG D G GG+
Sbjct: 709 GRRGRRRKYSLGRASRAGGSAVQLQTVSGQCPG----------EEDEGDDE---GAGGLE 755
Query: 68 GACL 71
G+CL
Sbjct: 756 GSCL 759
>gi|221139921 EF-hand calcium binding domain 8 [Homo sapiens]
Length = 1288
Score = 27.7 bits (60), Expect = 2.2
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 77 LEPSKEQQIMDTAE-TEAALSVPGQAKALSCQLPRVILSS 115
L PS+EQ ++DT + T AA S P +++ R++ SS
Sbjct: 1177 LVPSREQAVLDTTDSTPAAASSPSSLLSVTASASRLLDSS 1216
>gi|110227617 centaurin, gamma 3 isoform b [Homo sapiens]
Length = 396
Score = 27.7 bits (60), Expect = 2.2
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 25 GGGGLTGPRQSSQCPGGGYLSGASWLHTDSVGSRCCLGPGGVGGACLGPTHSLEPSKEQQ 84
GGG +QS PGGG GA+ G GPG GG GP+ L QQ
Sbjct: 6 GGGQSPQQQQSLAAPGGG---GAAAQQLVCGGQFGGAGPGAGGGG--GPSQQLAGGPPQQ 60
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.134 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,052,726
Number of Sequences: 37866
Number of extensions: 322831
Number of successful extensions: 1024
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 978
Number of HSP's gapped (non-prelim): 116
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.