Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100290951 Sequence: fasta or formatted (411aa) NCBI GI: 239748046
Description:

PREDICTED: hypothetical protein XP_002346501

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         40           2
 C cysteine            4.4         18           1
 D aspartate           1.7          7           1
 E glutamate           6.3         26           2
 F phenylalanine       2.4         10           2
 G glycine            12.9         53           3
 H histidine           5.4         22           2
 I isoleucine          1.0          4           1
 K lysine              1.7          7           2
 L leucine            10.0         41           2
 M methionine          0.7          3           1
 N asparagine          1.5          6           1
 P proline            10.0         41           1
 Q glutamine           6.6         27           2
 R arginine            6.3         26           1
 S serine              8.5         35           3
 T threonine           4.1         17           1
 V valine              4.9         20           2
 W tryptophan          1.7          7           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346501 
LOC100127987          0.024   PREDICTED: hypothetical protein LOC100127987 
LOC100127987          0.024   PREDICTED: hypothetical protein LOC100127987 
LOC100127987          0.024   PREDICTED: hypothetical protein LOC100127987 
C17orf63              0.017   hypothetical protein LOC55731 
C17orf63              0.017   hypothetical protein LOC55731 
TACC3                 0.015   transforming, acidic coiled-coil containing protein 3...
LOC100289978          0.014   PREDICTED: hypothetical protein XP_002348035 
LOC100133305          0.012   PREDICTED: hypothetical protein 
LOC100133305          0.012   PREDICTED: hypothetical protein 
LRRC41                0.012   MUF1 protein 
AMBRA1                0.011   activating molecule in beclin-1-regulated autophagy ...
WDR91                 0.011   WD repeat domain 91 
HSPG2                 0.011   heparan sulfate proteoglycan 2 
DHX36                 0.011   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...
DHX36                 0.011   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...
GLI4                  0.011   GLI-Kruppel family member GLI4 
KIAA1804              0.009   mixed lineage kinase 4 
KIAA1602              0.009   hypothetical protein LOC57701 
LOC100291688          0.009   PREDICTED: hypothetical protein XP_002345241 
LOC645602             0.009   PREDICTED: hypothetical protein 
LOC100292514          0.009   PREDICTED: hypothetical protein 
LOC100290054          0.009   PREDICTED: hypothetical protein XP_002348009 
LOC645602             0.009   PREDICTED: hypothetical protein 
LOC100290880          0.009   PREDICTED: hypothetical protein XP_002346484 
LOC100287338          0.009   PREDICTED: hypothetical protein XP_002343730 
LOC645602             0.009   PREDICTED: hypothetical protein 
LOC100287812          0.009   PREDICTED: hypothetical protein XP_002343253 
LOC100288000          0.009   PREDICTED: hypothetical protein XP_002342324 
COL16A1               0.009   alpha 1 type XVI collagen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press