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Search of human proteins with 23510366
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23510366 homeobox D10 [Homo sapiens]
(340 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23510366 homeobox D10 [Homo sapiens] 689 0.0
gi|24497533 homeobox C10 [Homo sapiens] 285 5e-77
gi|182765442 homeobox A10 isoform a [Homo sapiens] 249 2e-66
gi|24497551 homeobox A10 isoform b [Homo sapiens] 160 1e-39
gi|24497547 homeobox C9 [Homo sapiens] 134 9e-32
gi|194363768 homeobox D9 [Homo sapiens] 130 1e-30
gi|15029508 homeobox B9 [Homo sapiens] 130 2e-30
gi|23097236 homeobox A9 [Homo sapiens] 127 1e-29
gi|23510368 homeobox D11 [Homo sapiens] 102 6e-22
gi|7657166 homeobox C11 [Homo sapiens] 101 8e-22
gi|5031759 homeobox A11 [Homo sapiens] 100 1e-21
gi|13273317 homeobox B8 [Homo sapiens] 96 6e-20
gi|4504469 homeobox B5 [Homo sapiens] 94 1e-19
gi|23503237 homeobox B6 [Homo sapiens] 92 7e-19
gi|11321638 homeobox C5 [Homo sapiens] 88 1e-17
gi|12056969 homeobox C8 [Homo sapiens] 88 1e-17
gi|15029506 homeobox D8 [Homo sapiens] 86 4e-17
gi|13489077 homeobox A6 [Homo sapiens] 86 4e-17
gi|24497517 homeobox A5 [Homo sapiens] 85 8e-17
gi|85068580 homeobox B7 [Homo sapiens] 84 2e-16
gi|24497556 homeobox A7 [Homo sapiens] 83 4e-16
gi|24497513 homeobox A3 isoform a [Homo sapiens] 82 7e-16
gi|13562112 homeobox A3 isoform a [Homo sapiens] 82 7e-16
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 82 7e-16
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 82 7e-16
gi|24497538 homeobox C4 [Homo sapiens] 81 1e-15
gi|24497540 homeobox C4 [Homo sapiens] 81 1e-15
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 80 3e-15
gi|23397672 homeobox D4 [Homo sapiens] 80 3e-15
gi|148613882 homeobox A4 [Homo sapiens] 80 3e-15
>gi|23510366 homeobox D10 [Homo sapiens]
Length = 340
Score = 689 bits (1778), Expect = 0.0
Identities = 340/340 (100%), Positives = 340/340 (100%)
Query: 1 MSFPNSSPAANTFLVDSLISACRSDSFYSSSASMYMPPPSADMGTYGMQTCGLLPSLAKR 60
MSFPNSSPAANTFLVDSLISACRSDSFYSSSASMYMPPPSADMGTYGMQTCGLLPSLAKR
Sbjct: 1 MSFPNSSPAANTFLVDSLISACRSDSFYSSSASMYMPPPSADMGTYGMQTCGLLPSLAKR 60
Query: 61 EVNHQNMGMNVHPYIPQVDSWTDPNRSCRIEQPVTQQVPTCSFTTNIKEESNCCMYSDKR 120
EVNHQNMGMNVHPYIPQVDSWTDPNRSCRIEQPVTQQVPTCSFTTNIKEESNCCMYSDKR
Sbjct: 61 EVNHQNMGMNVHPYIPQVDSWTDPNRSCRIEQPVTQQVPTCSFTTNIKEESNCCMYSDKR 120
Query: 121 NKLISAEVPSYQRLVPESCPVENPEVPVPGYFRLSQTYATGKTQEYNNSPEGSSTVMLQL 180
NKLISAEVPSYQRLVPESCPVENPEVPVPGYFRLSQTYATGKTQEYNNSPEGSSTVMLQL
Sbjct: 121 NKLISAEVPSYQRLVPESCPVENPEVPVPGYFRLSQTYATGKTQEYNNSPEGSSTVMLQL 180
Query: 181 NPRGAAKPQLSAAQLQMEKKMNEPVSGQEPTKVSQVESPEAKGGLPEERSCLAEVSVSSP 240
NPRGAAKPQLSAAQLQMEKKMNEPVSGQEPTKVSQVESPEAKGGLPEERSCLAEVSVSSP
Sbjct: 181 NPRGAAKPQLSAAQLQMEKKMNEPVSGQEPTKVSQVESPEAKGGLPEERSCLAEVSVSSP 240
Query: 241 EVQEKESKEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS 300
EVQEKESKEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS
Sbjct: 241 EVQEKESKEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS 300
Query: 301 KSVNLTDRQVKIWFQNRRMKLKKMSRENRIRELTANLTFS 340
KSVNLTDRQVKIWFQNRRMKLKKMSRENRIRELTANLTFS
Sbjct: 301 KSVNLTDRQVKIWFQNRRMKLKKMSRENRIRELTANLTFS 340
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 285 bits (728), Expect = 5e-77
Identities = 163/323 (50%), Positives = 210/323 (65%), Gaps = 15/323 (4%)
Query: 28 YSSSASMYMPPPSADMGTYGMQTCGLLPSLAKR-EVNHQNMGMNVHP-YIPQVDSWTDPN 85
YS SA MYM S D M+ CGL PSL+KR E + ++ +N +P Y+ Q+DSW DP
Sbjct: 25 YSRSAGMYMQSGS-DFNCGVMRGCGLAPSLSKRDEGSSPSLALNTYPSYLSQLDSWGDPK 83
Query: 86 RSCRIEQPVTQQVPTCSFTTNIKEESNCCMYSDKRNKLISAEVPSYQRLVPESCPVENPE 145
+ R+EQPV + + +CS+ ++KEE+ CCMYS ++ E Y +PESC E+ E
Sbjct: 84 AAYRLEQPVGRPLSSCSYPPSVKEENVCCMYSAEKRAKSGPEAALYSHPLPESCLGEH-E 142
Query: 146 VPVPGYFRLSQTY-ATGKTQEYN--NSPEGSSTVMLQLNPRGAAKPQLSAAQLQMEKKMN 202
VPVP Y+R S +Y A KT + N E LNPR L + QL +
Sbjct: 143 VPVPSYYRASPSYSALDKTPHCSGANDFEAPFEQRASLNPRAE---HLESPQLGGKVSFP 199
Query: 203 E-PVSGQEPTKVSQVESPEA----KGGLPEERSCLAEVSVSSPEVQEKESKEEIKSDTPT 257
E P S + +++++ ++ KG E A+ + SSP+ + E+KEEIK++ T
Sbjct: 200 ETPKSDSQTPSPNEIKTEQSLAGPKGSPSESEKERAKAADSSPDTSDNEAKEEIKAENTT 259
Query: 258 SNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNR 317
NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISK++NLTDRQVKIWFQNR
Sbjct: 260 GNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNR 319
Query: 318 RMKLKKMSRENRIRELTANLTFS 340
RMKLKKM+RENRIRELT+N F+
Sbjct: 320 RMKLKKMNRENRIRELTSNFNFT 342
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 249 bits (636), Expect = 2e-66
Identities = 175/398 (43%), Positives = 217/398 (54%), Gaps = 70/398 (17%)
Query: 5 NSSPAANTFLVDSLISACRSDSF-------------YSSSASMYMPPPSADMGTYGMQTC 51
+ SPAAN+FLVDSLIS+ R ++ Y + +Y+PP +AD+ YG+Q+C
Sbjct: 21 SESPAANSFLVDSLISSGRGEAGGGGGGAGGGGGGGYYAHGGVYLPP-AADL-PYGLQSC 78
Query: 52 GLLPSLAKREVNHQN---------MGMNVHPYIPQ-VDSWTDPNRSCRIEQP-------- 93
GL P+L + + +G H Y P +D W D RSCR+E P
Sbjct: 79 GLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLDAPRSCRMEPPDGPPPPPQ 138
Query: 94 -----------VTQQVPTCSFTTNIKEESNCCMY--SDKRNKL--ISAEVPSYQR-LVPE 137
Q +CSF NIKEES+ C+Y +DK K+ +AE+ + R P+
Sbjct: 139 QQPPPPPQPPQPAPQATSCSFAQNIKEESSYCLYDSADKCPKVSATAAELAPFPRGPPPD 198
Query: 138 SCPVENPE-VPVPGYFRLSQTYATGKTQEYNNSPEGSSTV---MLQLNPRGAA---KPQL 190
C + VPVPGYFRLSQ Y T K Y + G+ + P G P L
Sbjct: 199 GCALGTSSGVPVPGYFRLSQAYGTAKG--YGSGGGGAQQLGAGPFPAQPPGRGFDLPPAL 256
Query: 191 SAAQLQMEKKMNEPVSGQEPTKVSQV-------ESPEAKGGLPEERS-CLAEVSVSSPEV 242
++ +K S PT E A EE S +E S +SPE
Sbjct: 257 ASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEELSPAPSESSKASPE- 315
Query: 243 QEKESKEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKS 302
K+S K + +NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS+S
Sbjct: 316 --KDSLGNSKGEN-AANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRS 372
Query: 303 VNLTDRQVKIWFQNRRMKLKKMSRENRIRELTANLTFS 340
V+LTDRQVKIWFQNRRMKLKKM+RENRIRELTAN FS
Sbjct: 373 VHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS 410
>gi|24497551 homeobox A10 isoform b [Homo sapiens]
Length = 94
Score = 160 bits (406), Expect = 1e-39
Identities = 77/83 (92%), Positives = 81/83 (97%)
Query: 258 SNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNR 317
+NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS+SV+LTDRQVKIWFQNR
Sbjct: 12 ANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNR 71
Query: 318 RMKLKKMSRENRIRELTANLTFS 340
RMKLKKM+RENRIRELTAN FS
Sbjct: 72 RMKLKKMNRENRIRELTANFNFS 94
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 134 bits (338), Expect = 9e-32
Identities = 66/120 (55%), Positives = 86/120 (71%), Gaps = 6/120 (5%)
Query: 219 PEAKGGLPEERSCLAEVSVSSPEV------QEKESKEEIKSDTPTSNWLTAKSGRKKRCP 272
P+ G P E A ++ SPE + KE K ++ P +NW+ A+S RKKRCP
Sbjct: 139 PDYMYGSPGELRDRAPQTLPSPEADALAGSKHKEEKADLDPSNPVANWIHARSTRKKRCP 198
Query: 273 YTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENRIRE 332
YTK+QTLELEKEFLFNMYLTR+RR E+++ +NLT+RQVKIWFQNRRMK+KKM++E +E
Sbjct: 199 YTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKE 258
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 130 bits (328), Expect = 1e-30
Identities = 68/150 (45%), Positives = 99/150 (66%), Gaps = 8/150 (5%)
Query: 183 RGAAKPQLSAAQLQMEKKMNEPVSGQEPTKVSQVESPEAKGGLPEERSC----LAEVSVS 238
+G++ P+ S +++K G P + + + GG E +C + S+
Sbjct: 200 QGSSGPEFSCNSF-LQEKAAAATGGTGPG--AGIGAATGTGGSSEPSACSDHPIPGCSLK 256
Query: 239 SPEVQEKE-SKEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRL 297
E Q + ++++ + P +NW+ A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+RR
Sbjct: 257 EEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRY 316
Query: 298 EISKSVNLTDRQVKIWFQNRRMKLKKMSRE 327
E+++ +NLT+RQVKIWFQNRRMK+KKMS+E
Sbjct: 317 EVARILNLTERQVKIWFQNRRMKMKKMSKE 346
>gi|15029508 homeobox B9 [Homo sapiens]
Length = 250
Score = 130 bits (327), Expect = 2e-30
Identities = 71/152 (46%), Positives = 96/152 (63%), Gaps = 6/152 (3%)
Query: 178 LQLNPRGAAKPQLSAAQLQMEKKMNEP--VSGQEPTKVSQVESPEAKGGLPEERSCLAEV 235
L+ PRG A P A ++ E + P + Q + S S + L +R +
Sbjct: 99 LEPAPRGEAAPGQGQAAVKAEPLLGAPGELLKQGTPEYSLETSAGREAVLSNQRPGYGDN 158
Query: 236 SVSSPEVQEKESKEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRER 295
+ + E KE P++NWL A+S RKKRCPYTK+QTLELEKEFLFNMYLTR+R
Sbjct: 159 KIC----EGSEDKERPDQTNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYLTRDR 214
Query: 296 RLEISKSVNLTDRQVKIWFQNRRMKLKKMSRE 327
R E+++ +NL++RQVKIWFQNRRMK+KKM++E
Sbjct: 215 RHEVARLLNLSERQVKIWFQNRRMKMKKMNKE 246
>gi|23097236 homeobox A9 [Homo sapiens]
Length = 272
Score = 127 bits (320), Expect = 1e-29
Identities = 64/110 (58%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
Query: 221 AKGGLPEERSCLAEVSVSSPEVQEKES---KEEIKSDTPTSNWLTAKSGRKKRCPYTKHQ 277
A G P +R S E ES K I + P +NWL A+S RKKRCPYTKHQ
Sbjct: 158 ACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRCPYTKHQ 217
Query: 278 TLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRE 327
TLELEKEFLFNMYLTR+RR E+++ +NLT+RQVKIWFQNRRMK+KK++++
Sbjct: 218 TLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 267
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 102 bits (253), Expect = 6e-22
Identities = 47/83 (56%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
Query: 257 TSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQN 316
+S+ + + RKKRCPYTK+Q ELE+EF FN+Y+ +E+RL++S+ +NLTDRQVKIWFQN
Sbjct: 257 SSSAVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQN 316
Query: 317 RRMKLKKMSRENRIRELTANLTF 339
RRMK KK++R+ R++ T N F
Sbjct: 317 RRMKEKKLNRD-RLQYFTGNPLF 338
>gi|7657166 homeobox C11 [Homo sapiens]
Length = 304
Score = 101 bits (252), Expect = 8e-22
Identities = 57/134 (42%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Query: 204 PVSGQEPTKVSQVESPEAKG-GLPEERSCLAEVSVSSPEVQEKESKEEIKSDTPTSNWLT 262
P SG+ K + E+P A G E AE + S + +
Sbjct: 170 PCSGKGEAK-GEPEAPPASGLASRAEAGAEAEAEEENTNPSSSGSAHSVAKEPAKGAAPN 228
Query: 263 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLK 322
A RKKRCPY+K Q ELE+EF FN+Y+ +E+RL++S+ +NLTDRQVKIWFQNRRMK K
Sbjct: 229 APRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEK 288
Query: 323 KMSRENRIRELTAN 336
K+SR+ R++ + N
Sbjct: 289 KLSRD-RLQYFSGN 301
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 100 bits (250), Expect = 1e-21
Identities = 51/110 (46%), Positives = 75/110 (68%), Gaps = 8/110 (7%)
Query: 234 EVSVSSPEVQEKESKEEIKSDTPTSNWLTAKSG-------RKKRCPYTKHQTLELEKEFL 286
E + ++ E + + E S +S K+G RKKRCPYTK+Q ELE+EF
Sbjct: 202 ETAAAAEEKERRRRPESSSSPESSSGHTEDKAGGSSGQRTRKKRCPYTKYQIRELEREFF 261
Query: 287 FNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENRIRELTAN 336
F++Y+ +E+RL++S+ +NLTDRQVKIWFQNRRMK KK++R+ R++ +AN
Sbjct: 262 FSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRD-RLQYYSAN 310
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 95.5 bits (236), Expect = 6e-20
Identities = 62/170 (36%), Positives = 92/170 (54%), Gaps = 19/170 (11%)
Query: 164 QEYNNSPEGSSTVMLQLNPRGAAKPQLSAAQLQMEKKMNEPVSG-QEPTKVSQVESPEAK 222
QE+ + P ST Q NP A + + + G Q+P V +
Sbjct: 55 QEFYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYAD----- 109
Query: 223 GGLPEERSCLAEVSVSSPEVQEKESKEEIKSDTPTSNWLT--AKSGRKK-RCPYTKHQTL 279
+++ +S +E E E+ S T W+ A +GR++ R Y+++QTL
Sbjct: 110 ----------CKLAAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTL 159
Query: 280 ELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENR 329
ELEKEFLFN YLTR+RR+E+S ++ LT+RQVKIWFQNRRMK KK + +++
Sbjct: 160 ELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDK 209
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 94.4 bits (233), Expect = 1e-19
Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 6/141 (4%)
Query: 200 KMNEPVSGQEPTKV-SQVESPEAKGGLPEERSCLAEVSVSSPEVQEKESKEEIKSDTPTS 258
+++E + EP + SQ+ SP PE + S ++PE Q + ++ S
Sbjct: 132 EIDEASASSEPEEAASQLSSPSLARAQPEPMA----TSTAAPEGQTPQIFPWMRK-LHIS 186
Query: 259 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRR 318
+ +T G++ R YT++QTLELEKEF FN YLTR RR+EI+ ++ L++RQ+KIWFQNRR
Sbjct: 187 HDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRR 246
Query: 319 MKLKKMSRENRIRELTANLTF 339
MK KK ++ + TA F
Sbjct: 247 MKWKKDNKLKSMSLATAGSAF 267
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 92.0 bits (227), Expect = 7e-19
Identities = 53/120 (44%), Positives = 69/120 (57%), Gaps = 17/120 (14%)
Query: 226 PEERSCLAEVSVSSPEVQEKESKEEIKSDTPTSNWLT----------AKSGRKKRCPYTK 275
P + C + SV EE K TP W+ SGR+ R YT+
Sbjct: 103 PRKSDCAQDKSVFG-------ETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTR 155
Query: 276 HQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENRIRELTA 335
+QTLELEKEF +N YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK S+ +L+A
Sbjct: 156 YQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSA 215
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 88.2 bits (217), Expect = 1e-17
Identities = 56/158 (35%), Positives = 78/158 (49%), Gaps = 10/158 (6%)
Query: 176 VMLQLNPRGAA-KPQLSAAQLQMEKKMNEPVSGQEPTKVSQVESPEAKGGLPEERSCLAE 234
V + NPR +P SAA + + P SQ A+ L E E
Sbjct: 61 VDMAANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQ---KAARPALEERAKSSGE 117
Query: 235 VSVSSPEVQEKESKEEIKSDTPTSNWLTA------KSGRKKRCPYTKHQTLELEKEFLFN 288
+ + + + + W+T G++ R YT++QTLELEKEF FN
Sbjct: 118 IKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFN 177
Query: 289 MYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSR 326
YLTR RR+EI+ ++ L +RQ+KIWFQNRRMK KK S+
Sbjct: 178 RYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSK 215
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 88.2 bits (217), Expect = 1e-17
Identities = 41/68 (60%), Positives = 55/68 (80%)
Query: 263 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLK 322
A R R Y+++QTLELEKEFLFN YLTR+RR+E+S ++ LT+RQVKIWFQNRRMK K
Sbjct: 146 APGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWK 205
Query: 323 KMSRENRI 330
K + ++++
Sbjct: 206 KENNKDKL 213
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 86.3 bits (212), Expect = 4e-17
Identities = 41/67 (61%), Positives = 54/67 (80%)
Query: 263 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLK 322
A R+ R Y++ QTLELEKEFLFN YLTR+RR+E+S ++ LT+RQVKIWFQNRRMK K
Sbjct: 194 APGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWK 253
Query: 323 KMSRENR 329
K + +++
Sbjct: 254 KENNKDK 260
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 86.3 bits (212), Expect = 4e-17
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 266 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMS 325
GR+ R YT++QTLELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK +
Sbjct: 155 GRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKEN 214
Query: 326 R 326
+
Sbjct: 215 K 215
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 85.1 bits (209), Expect = 8e-17
Identities = 39/69 (56%), Positives = 56/69 (81%), Gaps = 3/69 (4%)
Query: 266 GRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMS 325
G++ R YT++QTLELEKEF FN YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK KK
Sbjct: 195 GKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKK-- 252
Query: 326 RENRIRELT 334
+N+++ ++
Sbjct: 253 -DNKLKSMS 260
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 83.6 bits (205), Expect = 2e-16
Identities = 42/98 (42%), Positives = 66/98 (67%), Gaps = 2/98 (2%)
Query: 231 CLAEVSVSSPEVQEKESKEEIKSDTPTSNWLTAKSGRKKRC--PYTKHQTLELEKEFLFN 288
C + + ++ ++++S +S+ W+ + +KR YT++QTLELEKEF +N
Sbjct: 100 CPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYN 159
Query: 289 MYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSR 326
YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK ++
Sbjct: 160 RYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 82.8 bits (203), Expect = 4e-16
Identities = 40/70 (57%), Positives = 53/70 (75%), Gaps = 2/70 (2%)
Query: 260 WLTAKSGRKKRC--PYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNR 317
W+ + +KR YT++QTLELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNR
Sbjct: 122 WMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 181
Query: 318 RMKLKKMSRE 327
RMK KK ++
Sbjct: 182 RMKWKKEHKD 191
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 82.0 bits (201), Expect = 7e-16
Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 182 PRGAAKPQLSAAQLQMEKKMNEPVSGQEPTKVSQVESPEAKGGLPEERSCLAEVSVSSPE 241
P AA P Q + P + P+ S P+ P + ++SP
Sbjct: 94 PPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASP---PQNASNNPTPANAAKSPLLNSPT 150
Query: 242 VQE------KESKEEIKSDTPTSNWLTAKSGRKK----------RCPYTKHQTLELEKEF 285
V + KES++ K T +S+ + +G K R YT Q +ELEKEF
Sbjct: 151 VAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEF 210
Query: 286 LFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 323
FN YL R RR+E++ +NLT+RQ+KIWFQNRRMK KK
Sbjct: 211 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 82.0 bits (201), Expect = 7e-16
Identities = 56/158 (35%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 182 PRGAAKPQLSAAQLQMEKKMNEPVSGQEPTKVSQVESPEAKGGLPEERSCLAEVSVSSPE 241
P AA P Q + P + P+ S P+ P + ++SP
Sbjct: 94 PPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASP---PQNASNNPTPANAAKSPLLNSPT 150
Query: 242 VQE------KESKEEIKSDTPTSNWLTAKSGRKK----------RCPYTKHQTLELEKEF 285
V + KES++ K T +S+ + +G K R YT Q +ELEKEF
Sbjct: 151 VAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEF 210
Query: 286 LFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 323
FN YL R RR+E++ +NLT+RQ+KIWFQNRRMK KK
Sbjct: 211 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 82.0 bits (201), Expect = 7e-16
Identities = 39/59 (66%), Positives = 49/59 (83%)
Query: 267 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMS 325
R+ R Y+++QTLELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK S
Sbjct: 60 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKES 118
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 82.0 bits (201), Expect = 7e-16
Identities = 39/59 (66%), Positives = 49/59 (83%)
Query: 267 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMS 325
R+ R Y+++QTLELEKEF FN YLTR RR+EI+ ++ LT+RQ+KIWFQNRRMK KK S
Sbjct: 142 RRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKES 200
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 81.3 bits (199), Expect = 1e-15
Identities = 52/146 (35%), Positives = 69/146 (47%), Gaps = 6/146 (4%)
Query: 181 NPRGAAKPQLSAAQLQMEKKMNEPVSGQEPTKVSQVESPEAKGGLPEERSCLAEVSVSSP 240
N RG Q + + + EP + P P+ S A P
Sbjct: 77 NSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDHPSSAAS---KQP 133
Query: 241 EVQEKESKEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS 300
V K + + P N ++ R YT+ Q LELEKEF +N YLTR RR+EI+
Sbjct: 134 IVYPWMKKIHVSTVNPNYN---GGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIA 190
Query: 301 KSVNLTDRQVKIWFQNRRMKLKKMSR 326
S+ L++RQ+KIWFQNRRMK KK R
Sbjct: 191 HSLCLSERQIKIWFQNRRMKWKKDHR 216
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 81.3 bits (199), Expect = 1e-15
Identities = 52/146 (35%), Positives = 69/146 (47%), Gaps = 6/146 (4%)
Query: 181 NPRGAAKPQLSAAQLQMEKKMNEPVSGQEPTKVSQVESPEAKGGLPEERSCLAEVSVSSP 240
N RG Q + + + EP + P P+ S A P
Sbjct: 77 NSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDHPSSAAS---KQP 133
Query: 241 EVQEKESKEEIKSDTPTSNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEIS 300
V K + + P N ++ R YT+ Q LELEKEF +N YLTR RR+EI+
Sbjct: 134 IVYPWMKKIHVSTVNPNYN---GGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIA 190
Query: 301 KSVNLTDRQVKIWFQNRRMKLKKMSR 326
S+ L++RQ+KIWFQNRRMK KK R
Sbjct: 191 HSLCLSERQIKIWFQNRRMKWKKDHR 216
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 79.7 bits (195), Expect = 3e-15
Identities = 36/66 (54%), Positives = 49/66 (74%)
Query: 264 KSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 323
+ ++ R YT+ Q LELEKEFLFN Y++R RR+E++ +NLT+R +KIWFQNRRMK KK
Sbjct: 144 EENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 203
Query: 324 MSRENR 329
+ R
Sbjct: 204 EEDKKR 209
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 79.7 bits (195), Expect = 3e-15
Identities = 37/62 (59%), Positives = 47/62 (75%)
Query: 262 TAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKL 321
T ++ R YT+ Q LELEKEF FN YLTR RR+EI+ ++ L++RQ+KIWFQNRRMK
Sbjct: 150 TGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKW 209
Query: 322 KK 323
KK
Sbjct: 210 KK 211
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 79.7 bits (195), Expect = 3e-15
Identities = 37/57 (64%), Positives = 46/57 (80%)
Query: 267 RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKK 323
++ R YT+ Q LELEKEF FN YLTR RR+EI+ ++ L++RQVKIWFQNRRMK KK
Sbjct: 216 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKK 272
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.125 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,008,031
Number of Sequences: 37866
Number of extensions: 683347
Number of successful extensions: 2817
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 2392
Number of HSP's gapped (non-prelim): 548
length of query: 340
length of database: 18,247,518
effective HSP length: 103
effective length of query: 237
effective length of database: 14,347,320
effective search space: 3400314840
effective search space used: 3400314840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.