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Search of human proteins with 116174748
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116174748 developing brain homeobox 2 [Homo sapiens]
(339 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116174748 developing brain homeobox 2 [Homo sapiens] 689 0.0
gi|71274178 developing brain homeobox 1 [Homo sapiens] 127 1e-29
gi|11386181 H2.0-like homeobox [Homo sapiens] 91 2e-18
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 81 2e-15
gi|4885187 distal-less homeobox 5 [Homo sapiens] 77 2e-14
gi|153218470 BarH-like homeobox 1 [Homo sapiens] 74 2e-13
gi|4885185 distal-less homeobox 3 [Homo sapiens] 71 1e-12
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 70 2e-12
gi|6633798 BarH-like homeobox 2 [Homo sapiens] 70 2e-12
gi|4506049 hematopoietically expressed homeobox [Homo sapiens] 70 4e-12
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 69 6e-12
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 69 8e-12
gi|89257348 homeo box HB9 [Homo sapiens] 69 8e-12
gi|4758168 distal-less homeobox 2 [Homo sapiens] 68 1e-11
gi|28912912 NK6 transcription factor related, locus 2 [Homo sapi... 68 1e-11
gi|121114296 caudal type homeobox 1 [Homo sapiens] 67 2e-11
gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens] 67 3e-11
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 66 4e-11
gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens] 66 4e-11
gi|39930383 BarH-like homeobox 2 [Homo sapiens] 66 5e-11
gi|226437602 NK1 homeobox 2 [Homo sapiens] 65 7e-11
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 65 7e-11
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 65 9e-11
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 65 9e-11
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 65 9e-11
gi|13273317 homeobox B8 [Homo sapiens] 65 9e-11
gi|11321638 homeobox C5 [Homo sapiens] 65 1e-10
gi|157426823 NK2 homeobox 4 [Homo sapiens] 65 1e-10
gi|27777663 goosecoid [Homo sapiens] 65 1e-10
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 64 1e-10
>gi|116174748 developing brain homeobox 2 [Homo sapiens]
Length = 339
Score = 689 bits (1779), Expect = 0.0
Identities = 339/339 (100%), Positives = 339/339 (100%)
Query: 1 MLPSAVAAHAGAYWDVVASSALLNLPAAPGFGNLGKSFLIENLLRVGGAPTPRLQPPAPH 60
MLPSAVAAHAGAYWDVVASSALLNLPAAPGFGNLGKSFLIENLLRVGGAPTPRLQPPAPH
Sbjct: 1 MLPSAVAAHAGAYWDVVASSALLNLPAAPGFGNLGKSFLIENLLRVGGAPTPRLQPPAPH 60
Query: 61 DPATALATAGAQLRPLPASPVPLKLCPAAEQVSPAGAPYGTRWAFQVLSPSADSARLPGR 120
DPATALATAGAQLRPLPASPVPLKLCPAAEQVSPAGAPYGTRWAFQVLSPSADSARLPGR
Sbjct: 61 DPATALATAGAQLRPLPASPVPLKLCPAAEQVSPAGAPYGTRWAFQVLSPSADSARLPGR 120
Query: 121 APGDRDCTFQPSAPAPSKPFLLSTPPFYSACCGGSCRRPASSTAFPREESMLPLLTQDSN 180
APGDRDCTFQPSAPAPSKPFLLSTPPFYSACCGGSCRRPASSTAFPREESMLPLLTQDSN
Sbjct: 121 APGDRDCTFQPSAPAPSKPFLLSTPPFYSACCGGSCRRPASSTAFPREESMLPLLTQDSN 180
Query: 181 SKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQNRRMK 240
SKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQNRRMK
Sbjct: 181 SKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQNRRMK 240
Query: 241 WRNSKEKEVLSNRCIQEVGLQEDPLSRSALGFPSPCPSIWDVPQQHSSPRWRENSPEPSE 300
WRNSKEKEVLSNRCIQEVGLQEDPLSRSALGFPSPCPSIWDVPQQHSSPRWRENSPEPSE
Sbjct: 241 WRNSKEKEVLSNRCIQEVGLQEDPLSRSALGFPSPCPSIWDVPQQHSSPRWRENSPEPSE 300
Query: 301 RLIQESSGAPPPEANSLQGALYLCSEEEAGSKGVLTGAV 339
RLIQESSGAPPPEANSLQGALYLCSEEEAGSKGVLTGAV
Sbjct: 301 RLIQESSGAPPPEANSLQGALYLCSEEEAGSKGVLTGAV 339
>gi|71274178 developing brain homeobox 1 [Homo sapiens]
Length = 382
Score = 127 bits (320), Expect = 1e-29
Identities = 122/361 (33%), Positives = 156/361 (43%), Gaps = 77/361 (21%)
Query: 1 MLPSAVAAHAGAYWDVVASSALLNLPAAPGFGNLG-KSFLIENLLRVGGAPT--PRLQPP 57
M P +A AG Y ++ + L LP + G SFL+E+L+R+ P PR P
Sbjct: 2 MFPGLLAPPAG-YPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRSVPT 60
Query: 58 APHDPATALATAGAQLRPLPASPVPLKLCPAAEQVSPAGAPYGTRWAFQVLSPSADSARL 117
A P P +P L A++ SP SP++++ L
Sbjct: 61 ASMSP------------PRQGAPTALTDTGASDLGSPGPGSRRGGSPPTAFSPASETTFL 108
Query: 118 PGRAPGDRDCTFQPSAPAPSKPFLL-STPP--FYSACCGGSCRRPASSTAFPREESMLPL 174
+ + P LL S PP F GS + S+ FP S++P+
Sbjct: 109 KFGV----NAILSSGPRTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPI 164
Query: 175 LTQDS-----NSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKES- 228
S K RRG+LRRAVFS+ QRKALEKMFQKQKYISK DRKKLA LGLK+S
Sbjct: 165 PGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQ 224
Query: 229 --------------------------------------QVKIWFQNRRMKWRNSKEKEVL 250
QVKIWFQNRRMKWRNSKE+E+L
Sbjct: 225 DTARRTEPAPDSTPRPRASPGAPDLTSASPFFSPAGTFQVKIWFQNRRMKWRNSKERELL 284
Query: 251 SNRCIQEVGLQEDPLSRSALGFPSPCPSIWDVPQQHSSPRWRENSP-EPSERLIQESSGA 309
S+ G +E L +P P + DV Q+ E P PS RL +S
Sbjct: 285 SSG-----GCREQTLPTKL----NPHPDLSDVGQKGPGNEEEEEGPGSPSHRLAYHASSD 335
Query: 310 P 310
P
Sbjct: 336 P 336
>gi|11386181 H2.0-like homeobox [Homo sapiens]
Length = 488
Score = 90.5 bits (223), Expect = 2e-18
Identities = 61/156 (39%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 165 FPREESMLPLLTQDSNSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLG 224
FP ++L T K +R RAVFS QRK LEK F+ QKY++K DRK+LA LG
Sbjct: 256 FPGPYAVLTKDTMPQTYKRKRS-WSRAVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLG 314
Query: 225 LKESQVKIWFQNRRMKWRNSKEKEVLSNRCIQEVGLQEDPLSRSALGFPSPCPSIWDVPQ 284
L ++QVK+WFQNRRMKWR+SKE + ++ + A PS D Q
Sbjct: 315 LTDAQVKVWFQNRRMKWRHSKEAQAQKDK------------DKEAGEKPSGGAPAADGEQ 362
Query: 285 QHSSPRWRENSPEPSERLIQESSGAPPPEANSLQGA 320
SP E E SE ES P + +G+
Sbjct: 363 DERSPSRSEGEAE-SESSDSESLDMAPSDTERTEGS 397
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 80.9 bits (198), Expect = 2e-15
Identities = 66/196 (33%), Positives = 90/196 (45%), Gaps = 25/196 (12%)
Query: 63 ATALATAGAQLRPLPASPVPLKL-CPAAEQVSPAGAPYGTRWAFQVLSPSADSARLPGRA 121
A+A A A A +SP L P +SP P G + SPSA + GR
Sbjct: 136 ASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYF-----SPSAAAVAAVGRY 190
Query: 122 PGDRDCTFQPSAPAPSKPFLLSTPPFYSACCGGSCRRPASSTAFPREESMLPLLTQDSNS 181
P +P A P + TP F+ R A P + S+L L +D
Sbjct: 191 P-------KPLAELPGR-----TPIFWPGVMQSPPWRDARLACTPHQGSIL--LDKDGKR 236
Query: 182 KARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQNRRMKW 241
K R FS Q ALEK F++ KY++ +R +LA +LG+ ESQVK+WFQNRR KW
Sbjct: 237 KHTR-----PTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKW 291
Query: 242 RNSKEKEVLSNRCIQE 257
R E+ + + Q+
Sbjct: 292 RKKHAAEMATAKKKQD 307
>gi|4885187 distal-less homeobox 5 [Homo sapiens]
Length = 289
Score = 77.0 bits (188), Expect = 2e-14
Identities = 54/172 (31%), Positives = 86/172 (50%), Gaps = 24/172 (13%)
Query: 153 GGSCRRPASSTAFPREESMLPLLTQDSNSKARRGILRRAVFSEDQRKALEKMFQKQKYIS 212
GG+ R S+T P +E P + N K ++ R ++S Q AL++ FQK +Y++
Sbjct: 105 GGAYNRVPSATNQPEKEVTEPEVRM-VNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLA 163
Query: 213 KTDRKKLAINLGLKESQVKIWFQNRRMKWRNSKEKEVLSNRCIQEVGLQEDPLSRSALGF 272
+R +LA +LGL ++QVKIWFQN+R SK K+++ N E+ + P S +
Sbjct: 164 LPERAELAASLGLTQTQVKIWFQNKR-----SKIKKIMKN---GEMPPEHSPSSSDPMAC 215
Query: 273 PSP-CPSIWDVPQQHSSPRWRENSPEPSERLIQESSGAPPPEANSLQGALYL 323
SP P++W+ P+ S R + A PP +N + YL
Sbjct: 216 NSPQSPAVWE--------------PQGSSRSLSHHPHAHPPTSNQSPASSYL 253
>gi|153218470 BarH-like homeobox 1 [Homo sapiens]
Length = 254
Score = 73.6 bits (179), Expect = 2e-13
Identities = 35/65 (53%), Positives = 46/65 (70%)
Query: 178 DSNSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQNR 237
+ +KA++G R VF+E Q LEK F+KQKY+S DR LA +LGL + QVK W+QNR
Sbjct: 134 EPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNR 193
Query: 238 RMKWR 242
RMKW+
Sbjct: 194 RMKWK 198
>gi|4885185 distal-less homeobox 3 [Homo sapiens]
Length = 287
Score = 71.2 bits (173), Expect = 1e-12
Identities = 43/111 (38%), Positives = 65/111 (58%), Gaps = 10/111 (9%)
Query: 180 NSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQNRRM 239
N K ++ R ++S Q AL++ FQK +Y++ +R +LA LGL ++QVKIWFQNRR
Sbjct: 123 NGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRR- 181
Query: 240 KWRNSKEKEVLSNRCIQEVGLQEDPLSRSALGFPS-PCPSIWDVPQQHSSP 289
SK K++ N EV L+ P + ++ S P P++WD HS+P
Sbjct: 182 ----SKFKKLYKN---GEVPLEHSPNNSDSMACNSPPSPALWDT-SSHSTP 224
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 70.5 bits (171), Expect = 2e-12
Identities = 52/152 (34%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 95 AGAPYGTRWAFQVLSPSADS-ARL-PGRAPGDRDCTFQPSAPAPSKPFLLSTPPFYSACC 152
A + R A +P+ S ARL P R P +P P + P + PP +A
Sbjct: 9 ADRAFRPRGATPTCTPAQPSWARLRPTRPPEPPSTRQRPPGPRENSP-VAPGPPGGAAAP 67
Query: 153 GGSCRRP--ASSTAFPREESMLPLLTQDSNSKARRGILRRAVFSEDQRKALEKMFQKQKY 210
GG+ P ++ A P+ + S+SK+ + R F+ +Q ALE F+ +Y
Sbjct: 68 GGAGTTPQGTATAAKPKRKRT------GSDSKSGKPRRARTAFTYEQLVALENKFKATRY 121
Query: 211 ISKTDRKKLAINLGLKESQVKIWFQNRRMKWR 242
+S +R LA++L L E+QVKIWFQNRR KW+
Sbjct: 122 LSVCERLNLALSLSLTETQVKIWFQNRRTKWK 153
>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
Length = 279
Score = 70.5 bits (171), Expect = 2e-12
Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 27/159 (16%)
Query: 176 TQDSNSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQ 235
T+ + ++ R +F+E Q LEK FQKQKY+S DR LA +LGL + QVK W+Q
Sbjct: 123 TEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQ 182
Query: 236 NRRMKWRNSKEKEVLSNRCIQEVGLQEDPLSRSALGFPSPCPSIWDVPQQHSSPRWRENS 295
NRRMKW+ K VL G QE P P+++S P E
Sbjct: 183 NRRMKWK----KMVLK-------GGQEAPTKPKGR------------PKKNSIPTSEE-- 217
Query: 296 PEPSERLIQESSGAPPPEANSLQGALYLCSEEEAGSKGV 334
E E++ ++ G E + QG LC +E ++ V
Sbjct: 218 IEAEEKMNSQAQGQEQLEPS--QGQEELCEAQEPKARDV 254
>gi|4506049 hematopoietically expressed homeobox [Homo sapiens]
Length = 270
Score = 69.7 bits (169), Expect = 4e-12
Identities = 34/61 (55%), Positives = 41/61 (67%)
Query: 193 FSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQNRRMKWRNSKEKEVLSN 252
FS DQ LEK F+ QKY+S +RK+LA L L E QVK WFQNRR KWR K++ SN
Sbjct: 144 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRLKQENPQSN 203
Query: 253 R 253
+
Sbjct: 204 K 204
>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
Length = 254
Score = 68.9 bits (167), Expect = 6e-12
Identities = 77/254 (30%), Positives = 108/254 (42%), Gaps = 36/254 (14%)
Query: 15 DVVASSALLNL-PAAPGFGNLGKSFLIENLLRVGGAPTPRLQPPAP---HDPATALATAG 70
D ASS + +L P AP +G L N G + P PP P H LATA
Sbjct: 2 DPAASSCMRSLQPPAPVWGCLRNPHSEGN----GASGLPHY-PPTPFSFHQKPDFLATAT 56
Query: 71 AQLRPLPAS---PVPLKLCPAAEQV----SPAGAPYGTRWAFQVLSPSADSARLPGRAPG 123
A AS P L P E + PA P W F P +D+ R P P
Sbjct: 57 AAYPDFSASCLAATPHSL-PQEEHIFTEQHPA-FPQSPNWHF----PVSDARRRPNSGPA 110
Query: 124 DRDCTFQPSAPAPSKPFLLST---PPFYSACCGGSCRRPASSTAFPREESMLPLLTQ--- 177
S+ L+ T P G + ++ R+ES +
Sbjct: 111 GGSKEMGTSSLG-----LVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKP 165
Query: 178 DSNSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQNR 237
+ +SKAR+ R F+++Q + LE F Y+++ R ++A+NL L E QVK+WFQNR
Sbjct: 166 EGSSKARK---ERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNR 222
Query: 238 RMKWRNSKEKEVLS 251
RMKW+ K + +S
Sbjct: 223 RMKWKRVKGGQPIS 236
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 68.6 bits (166), Expect = 8e-12
Identities = 50/160 (31%), Positives = 72/160 (45%), Gaps = 18/160 (11%)
Query: 101 TRWAFQVLSPSADSAR----LPGRAPGDRDCTFQPSAPAPSKPFLLSTPPFYSACCGGSC 156
T W +S +AR L + G + P + L S+ P +AC G
Sbjct: 90 TNWHLPQMSSPPSAARHSLCLQPDSGGPPELGSSPPVLCSNSSSLGSSTPTGAACAPGDY 149
Query: 157 RRPASSTAFPREESMLPLLTQDS-----------NSKARRGILRRAVFSEDQRKALEKMF 205
R A S A + S + S NSK R+ R F+++Q + LE F
Sbjct: 150 GRQALSPAEAEKRSGGKRKSDSSDSQEGNYKSEVNSKPRK---ERTAFTKEQIRELEAEF 206
Query: 206 QKQKYISKTDRKKLAINLGLKESQVKIWFQNRRMKWRNSK 245
Y+++ R ++A+NL L E QVK+WFQNRRMKW+ K
Sbjct: 207 AHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVK 246
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 68.6 bits (166), Expect = 8e-12
Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 178 DSNSKARRGILR-----RAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKI 232
D NS+A+ +L R F+ Q LE F+ KY+S+ R ++A +L L E+QVKI
Sbjct: 228 DFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKI 287
Query: 233 WFQNRRMKWRNSKE-KEVLSNRCIQE--------VGLQEDPLSRSALGFPSPCPSIWDVP 283
WFQNRRMKW+ SK+ KE + ++ G E+P + LG P+P D
Sbjct: 288 WFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGGAGKGGAEEPGAEELLGPPAP----GDKG 343
Query: 284 QQHSSPRWRENSPEPSERLIQESSGAPPPEANSLQGALYLCSEEE 328
R++ PE E E P S+ A CS E+
Sbjct: 344 SGRRLRDLRDSDPEEDEDEDDEDH-FPYSNGASVHAASSDCSSED 387
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 68.2 bits (165), Expect = 1e-11
Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 12/135 (8%)
Query: 154 GSCRRPASSTAFPREESMLPLLTQDSNSKARRGILRRAVFSEDQRKALEKMFQKQKYISK 213
G+ PA++ P +E + P + + N K ++ R ++S Q AL++ FQK +Y++
Sbjct: 123 GTSSSPANNE--PEKEDLEPEI-RIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLAL 179
Query: 214 TDRKKLAINLGLKESQVKIWFQNRRMKWRNS-KEKEVLSNRCIQEVGLQEDPLSRSALGF 272
+R +LA +LGL ++QVKIWFQNRR K++ K E+ S Q G P S
Sbjct: 180 PERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSE---QHPGASASPPCASP--- 233
Query: 273 PSPCPSIWD--VPQQ 285
P P+ WD VPQ+
Sbjct: 234 PVSAPASWDFGVPQR 248
>gi|28912912 NK6 transcription factor related, locus 2 [Homo
sapiens]
Length = 277
Score = 68.2 bits (165), Expect = 1e-11
Identities = 33/68 (48%), Positives = 45/68 (66%)
Query: 190 RAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQNRRMKWRNSKEKEV 249
R FS Q ALEK F++ KY++ +R +LA +LG+ ESQVK+WFQNRR KWR E+
Sbjct: 152 RPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHAAEM 211
Query: 250 LSNRCIQE 257
S + Q+
Sbjct: 212 ASAKKKQD 219
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 67.0 bits (162), Expect = 2e-11
Identities = 65/203 (32%), Positives = 85/203 (41%), Gaps = 19/203 (9%)
Query: 48 GAPTPRLQPPAPHDPATALATAGAQLRPLPASPVPLKLCPAAEQVSPAGAPYGTRWAFQV 107
G P P PPAP P ++ + + P PA P P A YG A
Sbjct: 31 GPPAP---PPAP--PQYPDFSSYSHVEPAPAPPTAWG-APFPAPKDDWAAAYGPGPA--- 81
Query: 108 LSPSADSARLPGRAPGDRDCTFQPSAPAPSKPFLLSTPPFYSACCGGSCRRPASSTAFPR 167
+P+A A L P D P P P LL+ P G+ P + P
Sbjct: 82 -APAASPASLAFGPPPDFSPVPAPPGPGPG---LLAQP----LGGPGTPSSPGAQRPTPY 133
Query: 168 EESMLPLLTQDS--NSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGL 225
E + + K R R V+++ QR LEK F +YI+ + +LA NLGL
Sbjct: 134 EWMRRSVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGL 193
Query: 226 KESQVKIWFQNRRMKWRNSKEKE 248
E QVKIWFQNRR K R +K+
Sbjct: 194 TERQVKIWFQNRRAKERKVNKKK 216
>gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]
Length = 240
Score = 66.6 bits (161), Expect = 3e-11
Identities = 72/246 (29%), Positives = 104/246 (42%), Gaps = 49/246 (19%)
Query: 57 PAPHDPATALATAGAQLRPLP--ASPVPLKLCP--AAEQVSPAGAPYGTRWAFQVLSPSA 112
P P A L P+P A+ PL L P AA PYG ++ P+
Sbjct: 5 PCPLPGRDASKAVFPDLAPVPSVAAAYPLGLSPTTAASPNLSYSRPYGHLLSYPYTEPAN 64
Query: 113 DSARLPGRAPGDRDCTFQPSAPAPSKPFLLSTPPFYSACCGGSCRRPASSTAFPREESML 172
PGD + Q +P LS P CG PA +S
Sbjct: 65 ---------PGDSYLSCQ-------QPAALSQP-----LCG-----PAEHPQELEADSEK 98
Query: 173 PLLTQDSNSK-----ARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKE 227
P L+ + + + A++ R ++S Q + L + FQ +Y++ +R +LA LGL +
Sbjct: 99 PRLSPEPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQ 158
Query: 228 SQVKIWFQNRRMKWRNSKEKEVLSNRCIQEVGLQEDPLSRSALGFPSPC----PSIWDVP 283
+QVKIWFQN+R SK K++L Q G QE SPC PS+WD+P
Sbjct: 159 TQVKIWFQNKR-----SKYKKLLK----QNSGGQEGDFPGRTFSV-SPCSPPLPSLWDLP 208
Query: 284 QQHSSP 289
+ + P
Sbjct: 209 KAGTLP 214
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 66.2 bits (160), Expect = 4e-11
Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 19/124 (15%)
Query: 121 APGDRDCTFQPSAPAPSKPFLLSTPPFYSACCGGSCRRP--ASSTAFPREESMLPLLTQD 178
APG R+ + P AP P P +A GG+ P ++ A P+ +
Sbjct: 612 APGPRENS--PVAPGP---------PGGAAAPGGAGTTPQGTATAAKPKRKRT------G 654
Query: 179 SNSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQNRR 238
S+SK+ + R F+ +Q ALE F+ +Y+S +R LA++L L E+QVKIWFQNRR
Sbjct: 655 SDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRR 714
Query: 239 MKWR 242
KW+
Sbjct: 715 TKWK 718
>gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]
Length = 139
Score = 66.2 bits (160), Expect = 4e-11
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 178 DSNSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQNR 237
+ +SKAR+ R F+++Q + LE F Y+++ R ++A+NL L E QVK+WFQNR
Sbjct: 51 EGSSKARK---ERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNR 107
Query: 238 RMKWRNSKEKEVLS 251
RMKW+ K + +S
Sbjct: 108 RMKWKRVKGGQPIS 121
>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
Length = 387
Score = 65.9 bits (159), Expect = 5e-11
Identities = 70/242 (28%), Positives = 95/242 (39%), Gaps = 41/242 (16%)
Query: 55 QPPAPHD-PATALATAGAQLRPLPASPVPLKLCPAAEQVSPAGAPYGTRWAFQVLSPSAD 113
QPP P P +L Q +PLP P P + S A AP + +F + D
Sbjct: 93 QPPPPAAAPTQSLQPLPQQQQPLPPQQPPPP--PPQQLGSAASAPRTSTSSFLIKDILGD 150
Query: 114 SARLPGRAPGDRDCTFQPSAPAPSKPFLLSTPPFYSACCGGSCR-----RPASSTAFPRE 168
S L AP + S +P TP S S R + + RE
Sbjct: 151 SKPLAACAP------YSTSVSSPHH-----TPKQESNAVHESFRPKLEQEDSKTKLDKRE 199
Query: 169 ESMLPLLTQDSNSKARRGILR---------------RAVFSEDQRKALEKMFQKQKYISK 213
+S + + + R I R FS+ Q LE+ F++QKY+S
Sbjct: 200 DSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFSDHQLNQLERSFERQKYLSV 259
Query: 214 TDRKKLAINLGLKESQVKIWFQNRRMKWRNSKEKEVLSNRCIQEVGLQEDPLSRSALGFP 273
DR LA L L ++QVK W+QNRR KW K + + + E G L R FP
Sbjct: 260 QDRMDLAAALNLTDTQVKTWYQNRRTKW---KRQTAVGLELLAEAG-NYSALQRM---FP 312
Query: 274 SP 275
SP
Sbjct: 313 SP 314
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 65.5 bits (158), Expect = 7e-11
Identities = 65/195 (33%), Positives = 84/195 (43%), Gaps = 25/195 (12%)
Query: 57 PAPHDPATALATAGAQLRPLPASPV-----PLKLCPAAEQVSPAGAPYGTRWAFQVLSPS 111
PAP + +LA A PV P P A Q SP G+ + +
Sbjct: 41 PAPREARKSLAEVEAGKDASSRDPVRQLETPDAAGPGAGQASPLE---GSEAEEEEDAED 97
Query: 112 ADSARLPGRA----PGDRDCTFQPSAPAPSKPFLLSTPPFYSACCGGSCRRPASSTAFPR 167
RL RA PG P APA + L S P GG R P S PR
Sbjct: 98 PRRPRLRERAARLLPG---LARSPDAPAGA---LASGEPCEDGG-GGPVRSPPGSPGSPR 150
Query: 168 EESMLPLLTQDSNSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKE 227
+ + +K RR R F+ +Q ALE F+ +Y+S +R LA++L L E
Sbjct: 151 PRRRR---LEPNCAKPRRA---RTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTE 204
Query: 228 SQVKIWFQNRRMKWR 242
+QVKIWFQNRR KW+
Sbjct: 205 TQVKIWFQNRRTKWK 219
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 65.5 bits (158), Expect = 7e-11
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 9/116 (7%)
Query: 130 QPSAPAPSKPFLLST-PPFYSACCGGSCRRP--ASSTAFPREESMLPLLTQDSNSKARRG 186
+ +AP P + ++ PP +A GG+ P ++ A P+ + S+SK+ +
Sbjct: 206 EAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKPKRKRT------GSDSKSGKP 259
Query: 187 ILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQNRRMKWR 242
R F+ +Q ALE F+ +Y+S +R LA++L L E+QVKIWFQNRR KW+
Sbjct: 260 RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK 315
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 65.1 bits (157), Expect = 9e-11
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 153 GGSCRRPASSTAFPREESMLPLLTQDSNSKARRGILRRAVFSEDQRKALEKMFQKQKYIS 212
GG R P S PR + + +K RR R F+ +Q ALE F+ +Y+S
Sbjct: 158 GGPVRSPPGSPGSPRPRRRR---LEPNCAKPRRA---RTAFTYEQLVALENKFRATRYLS 211
Query: 213 KTDRKKLAINLGLKESQVKIWFQNRRMKWR 242
+R LA++L L E+QVKIWFQNRR KW+
Sbjct: 212 VCERLNLALSLSLTETQVKIWFQNRRTKWK 241
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 65.1 bits (157), Expect = 9e-11
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 153 GGSCRRPASSTAFPREESMLPLLTQDSNSKARRGILRRAVFSEDQRKALEKMFQKQKYIS 212
GG R P S PR + + +K RR R F+ +Q ALE F+ +Y+S
Sbjct: 158 GGPVRSPPGSPGSPRPRRRR---LEPNCAKPRRA---RTAFTYEQLVALENKFRATRYLS 211
Query: 213 KTDRKKLAINLGLKESQVKIWFQNRRMKWR 242
+R LA++L L E+QVKIWFQNRR KW+
Sbjct: 212 VCERLNLALSLSLTETQVKIWFQNRRTKWK 241
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 65.1 bits (157), Expect = 9e-11
Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 153 GGSCRRPASSTAFPREESMLPLLTQDSNSKARRGILRRAVFSEDQRKALEKMFQKQKYIS 212
GG R P S PR + + +K RR R F+ +Q ALE F+ +Y+S
Sbjct: 158 GGPVRSPPGSPGSPRPRRRR---LEPNCAKPRRA---RTAFTYEQLVALENKFRATRYLS 211
Query: 213 KTDRKKLAINLGLKESQVKIWFQNRRMKWR 242
+R LA++L L E+QVKIWFQNRR KW+
Sbjct: 212 VCERLNLALSLSLTETQVKIWFQNRRTKWK 241
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 65.1 bits (157), Expect = 9e-11
Identities = 42/120 (35%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 150 ACCGGSCRRPASSTAFPREESMLPLLTQDSNSKARRGILRRAVFSEDQRKALEKMFQKQK 209
A G S P + P + + + RRG R +S Q LEK F
Sbjct: 113 AAASGLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRG---RQTYSRYQTLELEKEFLFNP 169
Query: 210 YISKTDRKKLAINLGLKESQVKIWFQNRRMKWRNSKEKEVL-SNRCIQEVGLQEDPLSRS 268
Y+++ R +++ LGL E QVKIWFQNRRMKW+ K+ S++C QE L++ L R+
Sbjct: 170 YLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQE-ELEKQKLERA 228
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 64.7 bits (156), Expect = 1e-10
Identities = 49/156 (31%), Positives = 69/156 (44%), Gaps = 22/156 (14%)
Query: 110 PSADSARLPGRAPGDRDCTFQPSAPAPSKPFLLSTPPFYSAC-----CGGSCR------- 157
P+ +A PG APG + AP P + S A G +
Sbjct: 74 PACSAAAAPGHAPGRDEA-------APLNPGMYSQKAARPALEERAKSSGEIKEEQAQTG 126
Query: 158 RPASSTAFPREESMLPLLTQDSNSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRK 217
+PA + P + P +T+ S G R ++ Q LEK F +Y+++ R
Sbjct: 127 QPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRI 186
Query: 218 KLAINLGLKESQVKIWFQNRRMKWRNS---KEKEVL 250
++A NL L E Q+KIWFQNRRMKW+ K KE L
Sbjct: 187 EIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL 222
>gi|157426823 NK2 homeobox 4 [Homo sapiens]
Length = 354
Score = 64.7 bits (156), Expect = 1e-10
Identities = 76/285 (26%), Positives = 110/285 (38%), Gaps = 24/285 (8%)
Query: 46 VGGAPTPRLQPPAPHDPATALA-------TAGAQLRPLPASPVPLKLCPAAEQVSPAGA- 97
+G A R PP P A +A AG A+ A + P +
Sbjct: 42 LGAAAAYRAPPPGPSSQAATVAGMQPSHAMAGHNAAAAAAAAAAAAAAAATYHMPPGVSQ 101
Query: 98 -PYGTRWAFQVLSPSADSARLPGRAPGDRDCTFQPSAPAPSKPFLLSTPPFYSACCGGSC 156
P+G ++ + LP G R A P S F G +
Sbjct: 102 FPHGAMGSY-CNGGLGNMGELPAYTDGMRGGAATGWYGANPDPRYSSISRFMGPSAGVNV 160
Query: 157 RRPASSTAFP-REESMLPLLTQDSNSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTD 215
S T +S+ PL + + RR RR +FS+ Q LE+ F++QKY+S +
Sbjct: 161 AGMGSLTGIADAAKSLGPLHAAAAAAAPRRK--RRVLFSQAQVYELERRFKQQKYLSAPE 218
Query: 216 RKKLAINLGLKESQVKIWFQNRRMKWRNSKEKEVLSNRCIQEVGLQEDPLSRSALGFPSP 275
R+ LA + L +QVKIWFQN R K + + K+ + + QE GL P P P
Sbjct: 219 REHLASMIHLTPTQVKIWFQNHRYKMKR-QAKDKAAQQLQQEGGLGPPPP-------PPP 270
Query: 276 CPSIWDVPQQHSSPRWREN---SPEPSERLIQESSGAPPPEANSL 317
P VP + +N +P P + Q + P PE L
Sbjct: 271 SPRRVAVPVLVKDGKPCQNGASTPTPGQAGPQPPAPTPAPELEEL 315
>gi|27777663 goosecoid [Homo sapiens]
Length = 257
Score = 64.7 bits (156), Expect = 1e-10
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 18/112 (16%)
Query: 144 TPPFYSACCGGSCRRPASSTAFPREESMLPLLTQDSNSKA----------RRGILRRAVF 193
TPP Y P S P MLP + + S+ RR R +F
Sbjct: 116 TPPGYEG--------PGSVLVSPVPHQMLPYMNVGTLSRTELQLLNQLHCRRKRRHRTIF 167
Query: 194 SEDQRKALEKMFQKQKYISKTDRKKLAINLGLKESQVKIWFQNRRMKWRNSK 245
+++Q +ALE +FQ+ KY R++LA + L+E +V++WF+NRR KWR K
Sbjct: 168 TDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQK 219
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 64.3 bits (155), Expect = 1e-10
Identities = 76/271 (28%), Positives = 106/271 (39%), Gaps = 50/271 (18%)
Query: 57 PAPHDPAT--ALATAGAQLRPLPASPVPLKLCPAAEQVSPAG-APYGTRWAFQVLSPSAD 113
PAP A+ A G Q P P P P L A EQ SP +PY + P AD
Sbjct: 24 PAPEFSASPPACLYMGRQPPPPPPHPFPGAL-GALEQGSPPDISPYE-------VPPLAD 75
Query: 114 S---ARLPGRAPGDRDCTFQPSAPAP--SKPFLLSTP-------PFYSACCGGSCRRPAS 161
A L P P+ P P ++P +L P P+ + + + +
Sbjct: 76 DPAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWA 135
Query: 162 STAFPREESMLPLLTQDSNSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAI 221
A+ E + N + R ++ Q LEK F KYIS+ R +LA+
Sbjct: 136 GGAYAAEP--------EENKRTR------TAYTRAQLLELEKEFLFNKYISRPRRVELAV 181
Query: 222 NLGLKESQVKIWFQNRRMKWRNSKEKEVLSNRCIQEVGLQED------PLSRSALGFPSP 275
L L E +KIWFQNRRMKW+ ++K+ + G+ E L P P
Sbjct: 182 MLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPPP 241
Query: 276 CPSIWDVP-------QQHSSPRWRENSPEPS 299
P VP ++ P SP+PS
Sbjct: 242 PPPGGAVPPAAPVAAREGRLPPGLSASPQPS 272
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,750,251
Number of Sequences: 37866
Number of extensions: 1057097
Number of successful extensions: 6295
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 325
Number of HSP's that attempted gapping in prelim test: 5254
Number of HSP's gapped (non-prelim): 1295
length of query: 339
length of database: 18,247,518
effective HSP length: 103
effective length of query: 236
effective length of database: 14,347,320
effective search space: 3385967520
effective search space used: 3385967520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.