Guide to the Human Genome
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Name: DBX2 Sequence: fasta or formatted (339aa) NCBI GI: 116174748
Description:

developing brain homeobox 2

Referenced in:

Additional Brain Proteins
Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         40           2
 C cysteine            2.4          8           2
 D aspartate           2.9         10           1
 E glutamate           5.6         19           3
 F phenylalanine       3.2         11           1
 G glycine             6.5         22           2
 H histidine           0.9          3           1
 I isoleucine          2.4          8           1
 K lysine              5.0         17           2
 L leucine            10.3         35           2
 M methionine          1.2          4           1
 N asparagine          2.9         10           1
 P proline            11.5         39           3
 Q glutamine           5.0         17           2
 R arginine            7.1         24           2
 S serine             10.9         37           2
 T threonine           2.9         10           1
 V valine              4.1         14           2
 W tryptophan          1.8          6           1
 Y tyrosine            1.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   developing brain homeobox 2 
DBX1                  0.154   developing brain homeobox 1 
HLX                   0.099   H2.0-like homeobox 
NKX6-1                0.084   NK6 transcription factor related, locus 1 
DLX5                  0.078   distal-less homeobox 5 
BARX1                 0.074   BarH-like homeobox 1 
DLX3                  0.069   distal-less homeobox 3 
NKX1-1                0.068   PREDICTED: NK1 homeobox 1 
BARX2                 0.068   BarH-like homeobox 2 
HHEX                  0.068   hematopoietically expressed homeobox 
MEOX1                 0.066   mesenchyme homeobox 1 isoform 1 
MEOX2                 0.066   mesenchyme homeobox 2 
MNX1                  0.066   homeo box HB9 
DLX2                  0.065   distal-less homeobox 2 
NKX6-2                0.065   NK6 transcription factor related, locus 2 
CDX1                  0.063   caudal type homeobox 1 
DLX4                  0.063   distal-less homeobox 4 isoform a 
NKX1-1                0.062   PREDICTED: NK1 homeobox 1 
MEOX1                 0.062   mesenchyme homeobox 1 isoform 3 
BARHL2                0.062   BarH-like homeobox 2 
NKX1-2                0.060   NK1 homeobox 2 
NKX1-1                0.060   PREDICTED: HPX-153 homeobox 
NKX1-2                0.060   PREDICTED: NK1 homeobox 2 
NKX1-2                0.060   PREDICTED: NK1 homeobox 2 
NKX1-2                0.060   PREDICTED: NK1 homeobox 2 
HOXB8                 0.060   homeobox B8 
HOXC5                 0.060   homeobox C5 
NKX2-4                0.060   NK2 homeobox 4 
GSC                   0.060   goosecoid 
PDX1                  0.059   pancreatic and duodenal homeobox 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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