Guide to the Human Genome
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Name: TET2 Sequence: fasta or formatted (1165aa) NCBI GI: 116063558
Description:

tet oncogene family member 2 isoform b

Referenced in:

Hematopoiesis and Erythrocytes

Other entries for this name:
alt prot [2002aa] tet oncogene family member 2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         57           2
 C cysteine            2.3         27           1
 D aspartate           2.8         33           2
 E glutamate           6.9         80           2
 F phenylalanine       3.1         36           3
 G glycine             4.5         52           2
 H histidine           4.5         53           3
 I isoleucine          2.7         31           2
 K lysine              7.1         83           2
 L leucine             7.6         88           3
 M methionine          2.0         23           1
 N asparagine          6.5         76           2
 P proline             7.7         90           4
 Q glutamine          11.0        128           5
 R arginine            2.8         33           2
 S serine             10.4        121           3
 T threonine           6.7         78           3
 V valine              4.4         51           2
 W tryptophan          0.3          4           1
 Y tyrosine            1.8         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tet oncogene family member 2 isoform b 
TET2                  0.974   tet oncogene family member 2 isoform a 
TET3                  0.018   tet oncogene family member 3 
ZNF853                0.013   zinc finger protein 853 
MAML2                 0.013   mastermind-like 2 
XIRP2                 0.013   xin actin-binding repeat containing 2 isoform 1 [Ho...
PAXIP1                0.012   PAX interacting protein 1 
TOX3                  0.011   TOX high mobility group box family member 3 isoform...
TOX3                  0.011   TOX high mobility group box family member 3 isoform...
IVL                   0.008   involucrin 
MED15                 0.008   mediator complex subunit 15 isoform a 
MED15                 0.008   mediator complex subunit 15 isoform b 
GOLGA3                0.008   Golgi autoantigen, golgin subfamily a, 3 
KIAA2018              0.008   hypothetical protein LOC205717 
GOLIM4                0.007   golgi integral membrane protein 4 
MED12                 0.007   mediator complex subunit 12 
NCOA3                 0.007   nuclear receptor coactivator 3 isoform a 
WNK1                  0.007   WNK lysine deficient protein kinase 1 
NAV3                  0.007   neuron navigator 3 
BIN2                  0.006   bridging integrator 2 
ABL1                  0.006   c-abl oncogene 1, receptor tyrosine kinase isoform a...
ABL1                  0.006   c-abl oncogene 1, receptor tyrosine kinase isoform b...
MLL2                  0.006   myeloid/lymphoid or mixed-lineage leukemia 2 
AAK1                  0.006   AP2 associated kinase 1 
ITSN1                 0.006   intersectin 1 isoform ITSN-s 
ITSN1                 0.006   intersectin 1 isoform ITSN-l 
MYST3                 0.006   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.006   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.006   MYST histone acetyltransferase (monocytic leukemia)...
TCHH                  0.006   trichohyalin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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