Guide to the Human Genome
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Name: GOLGA3 Sequence: fasta or formatted (1498aa) NCBI GI: 30089940
Description:

Golgi autoantigen, golgin subfamily a, 3

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1        137           4
 C cysteine            0.6          9           1
 D aspartate           4.5         68           2
 E glutamate          11.7        176           3
 F phenylalanine       0.9         13           1
 G glycine             4.5         68           2
 H histidine           2.1         31           1
 I isoleucine          1.9         29           2
 K lysine              7.2        108           2
 L leucine            13.1        196           2
 M methionine          2.5         37           1
 N asparagine          2.5         37           2
 P proline             3.7         56           3
 Q glutamine          11.1        166           3
 R arginine            5.8         87           2
 S serine              9.0        135           3
 T threonine           4.4         66           2
 V valine              4.2         63           2
 W tryptophan          0.3          5           1
 Y tyrosine            0.7         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Golgi autoantigen, golgin subfamily a, 3 
MYH9                  0.066   myosin, heavy polypeptide 9, non-muscle 
NUMA1                 0.061   nuclear mitotic apparatus protein 1 
MYH10                 0.057   myosin, heavy polypeptide 10, non-muscle 
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
PLEC1                 0.056   plectin 1 isoform 11 
PLEC1                 0.056   plectin 1 isoform 10 
PLEC1                 0.056   plectin 1 isoform 8 
PLEC1                 0.056   plectin 1 isoform 7 
PLEC1                 0.056   plectin 1 isoform 6 
PLEC1                 0.056   plectin 1 isoform 3 
PLEC1                 0.056   plectin 1 isoform 2 
PLEC1                 0.056   plectin 1 isoform 1 
EEA1                  0.055   early endosome antigen 1, 162kD 
MYH13                 0.054   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH8                  0.053   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH7                  0.053   myosin, heavy chain 7, cardiac muscle, beta 
CEP250                0.053   centrosomal protein 2 
GOLGA4                0.053   golgi autoantigen, golgin subfamily a, 4 
MYH6                  0.052   myosin heavy chain 6 
CENPF                 0.051   centromere protein F 
MYH7B                 0.051   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
CROCC                 0.051   ciliary rootlet coiled-coil 
MYH1                  0.051   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH2                  0.051   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.051   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH14                 0.051   myosin, heavy chain 14 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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