Guide to the Human Genome
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Name: CXorf49 Sequence: fasta or formatted (514aa) NCBI GI: 223468693
Description:

hypothetical protein LOC100130361

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         49           4
 C cysteine            1.6          8           1
 D aspartate           5.1         26           2
 E glutamate           6.0         31           1
 F phenylalanine       2.7         14           1
 G glycine            11.7         60           2
 H histidine           2.1         11           1
 I isoleucine          1.2          6           1
 K lysine              5.3         27           2
 L leucine             6.4         33           1
 M methionine          1.2          6           1
 N asparagine          1.4          7           1
 P proline            12.5         64           3
 Q glutamine           5.6         29           3
 R arginine            7.8         40           2
 S serine             10.3         53           3
 T threonine           2.7         14           1
 V valine              4.9         25           2
 W tryptophan          1.4          7           1
 Y tyrosine            0.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC100130361 
CXorf49B              1.000   hypothetical protein LOC100132994 
LOC100288033          0.676   PREDICTED: hypothetical protein 
LOC100288033          0.676   PREDICTED: hypothetical protein XP_002343859 
LOC100292217          0.631   PREDICTED: hypothetical protein 
LOC100293055          0.033   PREDICTED: similar to COL22A1 protein 
COL22A1               0.033   collagen, type XXII, alpha 1 
PRB1                  0.032   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB3                  0.029   proline-rich protein BstNI subfamily 3 precursor [H...
COL1A1                0.028   alpha 1 type I collagen preproprotein 
PRB2                  0.028   proline-rich protein BstNI subfamily 2 
COL4A1                0.025   alpha 1 type IV collagen preproprotein 
COL2A1                0.025   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.025   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL7A1                0.024   alpha 1 type VII collagen precursor 
SYDE1                 0.024   synapse defective 1, Rho GTPase, homolog 1 
SRRM2                 0.024   splicing coactivator subunit SRm300 
SLC38A10              0.024   solute carrier family 38, member 10 isoform b 
PRB4                  0.024   proline-rich protein BstNI subfamily 4 precursor [Ho...
PCLO                  0.023   piccolo isoform 2 
PCLO                  0.023   piccolo isoform 1 
LOC643355             0.022   PREDICTED: hypothetical protein 
LOC441056             0.022   PREDICTED: double homeobox, 4-like 
HIVEP3                0.021   human immunodeficiency virus type I enhancer bindin...
LOC440017             0.021   PREDICTED: similar to double homeobox, 4 
LOC728022             0.021   PREDICTED: similar to double homeobox, 4 
LOC440014             0.021   PREDICTED: similar to double homeobox, 4 
LOC399839             0.021   PREDICTED: similar to double homeobox, 4 
LOC440013             0.021   PREDICTED: similar to double homeobox, 4 
ARHGAP17              0.021   nadrin isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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