Guide to the Human Genome
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Name: BCKDHA Sequence: fasta or formatted (445aa) NCBI GI: 11386135
Description:

branched chain keto acid dehydrogenase E1, alpha polypeptide

Referenced in:

Amino Acid Catabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         45           3
 C cysteine            1.1          5           1
 D aspartate           5.2         23           2
 E glutamate           6.1         27           2
 F phenylalanine       4.0         18           2
 G glycine             7.0         31           1
 H histidine           2.9         13           2
 I isoleucine          5.2         23           2
 K lysine              4.0         18           1
 L leucine             7.4         33           4
 M methionine          2.7         12           1
 N asparagine          4.0         18           2
 P proline             5.4         24           2
 Q glutamine           6.5         29           4
 R arginine            7.9         35           3
 S serine              6.3         28           2
 T threonine           3.1         14           1
 V valine              4.7         21           2
 W tryptophan          1.1          5           2
 Y tyrosine            5.2         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   branched chain keto acid dehydrogenase E1, alpha pol... 
PDHA1                 0.107   pyruvate dehydrogenase E1 alpha 1 precursor 
PDHA2                 0.102   pyruvate dehydrogenase E1 alpha 2 
TKTL2                 0.016   transketolase-like 2 
TKT                   0.014   transketolase isoform 1 
TKT                   0.014   transketolase isoform 1 
TKT                   0.009   transketolase isoform 2 
DDX43                 0.008   DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 
GOLIM4                0.008   golgi integral membrane protein 4 
UPF2                  0.007   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.007   UPF2 regulator of nonsense transcripts homolog [Homo...
IPO13                 0.006   importin 13 
CEP164                0.006   centrosomal protein 164kDa 
PSMD1                 0.006   proteasome 26S non-ATPase subunit 1 
KIF16B                0.006   kinesin-like motor protein C20orf23 
TCERG1                0.006   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.006   transcription elongation regulator 1 isoform 1 [Homo...
MLLT4                 0.006   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.006   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.006   myeloid/lymphoid or mixed-lineage leukemia (trithora...
RBM25                 0.005   RNA binding motif protein 25 
DDX53                 0.005   DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 
KAL1                  0.005   Kallmann syndrome 1 protein precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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