Search of human proteins with 20149709

Search of human proteins with 20149709

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|20149709 heterogeneous nuclear ribonucleoprotein L-like
isoform 1 [Homo sapiens]
         (542 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|20149709 heterogeneous nuclear ribonucleoprotein L-like isofo...  1103   0.0  
gi|217416379 heterogeneous nuclear ribonucleoprotein L-like isof...  1090   0.0  
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ...   557   e-158
gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b ...   492   e-139
gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Ho...   174   2e-43
gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Hom...   171   1e-42
gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Ho...   171   2e-42
gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens]     169   6e-42
gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens]        153   4e-37
gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Ho...    75   1e-13
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ...    40   0.007
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ...    40   0.007
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ...    40   0.007
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ...    40   0.007
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]             37   0.035
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ...    37   0.060
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ...    37   0.060
gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo sapi...    35   0.13 
gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo ...    35   0.17 
gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [...    35   0.23 
gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2 [...    34   0.30 
gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Ho...    34   0.30 
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]     33   0.51 
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]     33   0.51 
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]     33   0.51 
gi|148233596 LPS-responsive vesicle trafficking, beach and ancho...    33   0.51 
gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo sap...    33   0.66 
gi|113416182 PREDICTED: hypothetical protein LOC285556 [Homo sap...    33   0.66 
gi|113415686 PREDICTED: hypothetical protein LOC285556 [Homo sap...    33   0.66 
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]               32   1.1  

>gi|20149709 heterogeneous nuclear ribonucleoprotein L-like isoform
           1 [Homo sapiens]
          Length = 542

 Score = 1103 bits (2854), Expect = 0.0
 Identities = 542/542 (100%), Positives = 542/542 (100%)

Query: 1   MSSSSSSPRETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF 60
           MSSSSSSPRETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF
Sbjct: 1   MSSSSSSPRETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF 60

Query: 61  SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN 120
           SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN
Sbjct: 61  SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN 120

Query: 121 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI 180
           IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI
Sbjct: 121 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI 180

Query: 181 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 240
           TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE
Sbjct: 181 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 240

Query: 241 YARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPL 300
           YARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPL
Sbjct: 241 YARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPL 300

Query: 301 PSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYG 360
           PSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYG
Sbjct: 301 PSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYG 360

Query: 361 NIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFEL 420
           NIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFEL
Sbjct: 361 NIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFEL 420

Query: 421 EDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVL 480
           EDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVL
Sbjct: 421 EDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVL 480

Query: 481 TFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSS 540
           TFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSS
Sbjct: 481 TFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSS 540

Query: 541 HL 542
           HL
Sbjct: 541 HL 542


>gi|217416379 heterogeneous nuclear ribonucleoprotein L-like isoform
           2 [Homo sapiens]
          Length = 537

 Score = 1090 bits (2818), Expect = 0.0
 Identities = 534/534 (100%), Positives = 534/534 (100%)

Query: 9   RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGS 68
           RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGS
Sbjct: 4   RETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGS 63

Query: 69  HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECV 128
           HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECV
Sbjct: 64  HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECV 123

Query: 129 TFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTV 188
           TFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTV
Sbjct: 124 TFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTV 183

Query: 189 CNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 248
           CNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN
Sbjct: 184 CNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 243

Query: 249 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 308
           VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS
Sbjct: 244 VIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYRMGS 303

Query: 309 RDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFM 368
           RDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFM
Sbjct: 304 RDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFM 363

Query: 369 KTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYK 428
           KTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYK
Sbjct: 364 KTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYK 423

Query: 429 DFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVF 488
           DFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVF
Sbjct: 424 DFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVF 483

Query: 489 DAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSHL 542
           DAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSHL
Sbjct: 484 DAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSHL 537


>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
           [Homo sapiens]
          Length = 589

 Score =  557 bits (1435), Expect = e-158
 Identities = 297/520 (57%), Positives = 367/520 (70%), Gaps = 30/520 (5%)

Query: 49  GGGDGGGGGRSFSQPEAGGSH----HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICY 104
           GGG GGGGG   +    GG +    HK   SPVVH+RGL + VVEADLVEAL++FG I Y
Sbjct: 71  GGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISY 130

Query: 105 VMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSG 164
           V++MP KRQALVEFE++  A   V +AAD  +YIAG  AF NYSTS++I+RPG++DD   
Sbjct: 131 VVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRS 190

Query: 165 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAA 224
            N VLL +I NP+Y IT DVLYT+CNP G VQRIVIF++NG+QAMVEF+SV  AQ+AKA+
Sbjct: 191 VNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKAS 250

Query: 225 LNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL-GRRDRGKG---RQRQ-AIL 279
           LNGADIY+GCCTLKIEYA+PTRLNV +ND D+WDYT P L G+ D G     RQRQ  +L
Sbjct: 251 LNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLL 310

Query: 280 GEHPSSF--RHDGYGSH------GPLLPLPSRYRMG----------SRDTPELVAYPLPQ 321
           G+HP+ +   H GY SH      GP  P     RMG          SR  P+    P P 
Sbjct: 311 GDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPP 370

Query: 322 ASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGD 381
               Y  G +    V+MV GL Q KMNC RVFN+FCLYGN+EKVKFMK+ PG A+VEM D
Sbjct: 371 PPPEY--GPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMAD 428

Query: 382 EYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSA 441
            YAV+RA+THLNN  +FG++LNVCVSKQ +++P Q + LEDG+ SYKDF+ S+NNRF++ 
Sbjct: 429 GYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTP 488

Query: 442 GQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLL 501
            QA+KN IQ PS VLH++N PL VTEE F ++C++  V      KVF  K S ++ SGLL
Sbjct: 489 EQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGK-SERSSSGLL 547

Query: 502 EWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSH 541
           EWE K+DA+E L  LNHYQ++ PNG  PYTLKLCFST+ H
Sbjct: 548 EWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQH 587


>gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b
           [Homo sapiens]
          Length = 456

 Score =  492 bits (1266), Expect = e-139
 Identities = 262/457 (57%), Positives = 324/457 (70%), Gaps = 26/457 (5%)

Query: 108 MPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNK 167
           MP KRQALVEFE++  A   V +AAD  +YIAG  AF NYSTS++I+RPG++DD    N 
Sbjct: 1   MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNS 60

Query: 168 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNG 227
           VLL +I NP+Y IT DVLYT+CNP G VQRIVIF++NG+QAMVEF+SV  AQ+AKA+LNG
Sbjct: 61  VLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNG 120

Query: 228 ADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL-GRRDRGKG---RQRQ-AILGEH 282
           ADIY+GCCTLKIEYA+PTRLNV +ND D+WDYT P L G+ D G     RQRQ  +LG+H
Sbjct: 121 ADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDH 180

Query: 283 PSSF--RHDGYGSH------GPLLPLPSRYRMG----------SRDTPELVAYPLPQASS 324
           P+ +   H GY SH      GP  P     RMG          SR  P+    P P    
Sbjct: 181 PAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPP 240

Query: 325 SYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYA 384
            Y  G +    V+MV GL Q KMNC RVFN+FCLYGN+EKVKFMK+ PG A+VEM D YA
Sbjct: 241 EY--GPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYA 298

Query: 385 VERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQA 444
           V+RA+THLNN  +FG++LNVCVSKQ +++P Q + LEDG+ SYKDF+ S+NNRF++  QA
Sbjct: 299 VDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQA 358

Query: 445 SKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWE 504
           +KN IQ PS VLH++N PL VTEE F ++C++  V      KVF  K S ++ SGLLEWE
Sbjct: 359 AKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGK-SERSSSGLLEWE 417

Query: 505 CKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSH 541
            K+DA+E L  LNHYQ++ PNG  PYTLKLCFST+ H
Sbjct: 418 SKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQH 454


>gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Homo
           sapiens]
          Length = 531

 Score =  174 bits (441), Expect = 2e-43
 Identities = 136/500 (27%), Positives = 235/500 (47%), Gaps = 61/500 (12%)

Query: 75  SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
           S V+H+R L   V E +++     FG +  ++M+  K QA +E    ++A   V +    
Sbjct: 58  SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSV 117

Query: 135 PVYIAGQQAFFNYSTSKRITRPGNTDDP-------------------------------- 162
              + GQ  +  +S  K +    + +                                  
Sbjct: 118 TPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAM 177

Query: 163 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKA 221
           +G + VL + ++N  YP+T+DVL+ + +  G V +I+ F K N  QA++++   + AQ A
Sbjct: 178 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA 237

Query: 222 KAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGE 281
           K +L+G +IY  CCTL+I++++ T LNV  N++ S DYT+P     D   G  + ++   
Sbjct: 238 KLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRP-----DLPSGDSQPSLDQT 292

Query: 282 HPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSG 341
             ++F       HG L PL       +      +A P           GN   SV++VS 
Sbjct: 293 MAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIP------GLAGAGN---SVLLVSN 343

Query: 342 LHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKR 401
           L+  ++    +F LF +YG++++VK +      ALV+M D    + A++HLN  KL GK 
Sbjct: 344 LNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 403

Query: 402 LNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNV 461
           + + +SK  +V   +  + + G +  KD+  S  +RF   G  +   I PPS  LH  N+
Sbjct: 404 IRITLSKHQNVQLPREGQEDQGLT--KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNI 461

Query: 462 PLCVTEETFTKLCNDH-EVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQ 520
           P  V+EE    L + +  V+   K+   D K        L++     +AV+AL  L+++ 
Sbjct: 462 PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK------MALIQMGSVEEAVQALIDLHNHD 515

Query: 521 IRVPNGSNPYTLKLCFSTSS 540
           +    G N + L++ FS S+
Sbjct: 516 L----GEN-HHLRVSFSKST 530


>gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Homo
           sapiens]
          Length = 557

 Score =  171 bits (434), Expect = 1e-42
 Identities = 137/512 (26%), Positives = 236/512 (46%), Gaps = 59/512 (11%)

Query: 75  SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
           S V+H+R L   V E +++     FG +  ++M+  K QA +E    ++A   V +    
Sbjct: 58  SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSV 117

Query: 135 PVYIAGQQAFFNYSTSKRITRPGNTDDP-------------------------------- 162
              + GQ  +  +S  K +    + +                                  
Sbjct: 118 TPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAM 177

Query: 163 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKA 221
           +G + VL + ++N  YP+T+DVL+ + +  G V +I+ F K N  QA++++   + AQ A
Sbjct: 178 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA 237

Query: 222 KAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKG-RQRQAILG 280
           K +L+G +IY  CCTL+I++++ T LNV  N++ S DYT+P L   D      Q  A   
Sbjct: 238 KLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAF 297

Query: 281 EHPSSFRHDGYGSHG--PLLPLPSRYRMGSRDT-PELVAYPLPQASSSYMHGG------- 330
             P       Y   G  P   +P    +   +    L    +P A+++    G       
Sbjct: 298 GAPGIISASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGL 357

Query: 331 -NPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAV 389
                SV++VS L+  ++    +F LF +YG++++VK +      ALV+M D    + A+
Sbjct: 358 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAM 417

Query: 390 THLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNII 449
           +HLN  KL GK + + +SK  +V   +  + + G +  KD+  S  +RF   G  +   I
Sbjct: 418 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLT--KDYGNSPLHRFKKPGSKNFQNI 475

Query: 450 QPPSCVLHYYNVPLCVTEETFTKLCNDH-EVLTFIKYKVFDAKPSAKTLSGLLEWECKTD 508
            PPS  LH  N+P  V+EE    L + +  V+   K+   D K        L++     +
Sbjct: 476 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK------MALIQMGSVEE 529

Query: 509 AVEALTALNHYQIRVPNGSNPYTLKLCFSTSS 540
           AV+AL  L+++ +    G N + L++ FS S+
Sbjct: 530 AVQALIDLHNHDL----GEN-HHLRVSFSKST 556


>gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Homo
           sapiens]
          Length = 550

 Score =  171 bits (433), Expect = 2e-42
 Identities = 135/509 (26%), Positives = 238/509 (46%), Gaps = 60/509 (11%)

Query: 75  SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
           S V+H+R L   V E +++     FG +  ++M+  K QA +E    ++A   V +    
Sbjct: 58  SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSV 117

Query: 135 PVYIAGQQAFFNYSTSKRITRPGNTDDP-------------------------------- 162
              + GQ  +  +S  K +    + +                                  
Sbjct: 118 TPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAM 177

Query: 163 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKA 221
           +G + VL + ++N  YP+T+DVL+ + +  G V +I+ F K N  QA++++   + AQ A
Sbjct: 178 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHA 237

Query: 222 KAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGE 281
           K +L+G +IY  CCTL+I++++ T LNV  N++ S DYT+P L   D  +    Q +   
Sbjct: 238 KLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGD-SQPSLDQTMAAA 296

Query: 282 HPSSFRHDGYGSHGPLLPLPSRYRMGSRDT-PELVAYPLPQASSSYMHGG--------NP 332
             S +   G+    P   +P    +   +    L    +P A+++    G          
Sbjct: 297 FASPYAGAGF---PPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGA 353

Query: 333 SGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHL 392
             SV++VS L+  ++    +F LF +YG++++VK +      ALV+M D    + A++HL
Sbjct: 354 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHL 413

Query: 393 NNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPP 452
           N  KL GK + + +SK  +V   +  + + G +  KD+  S  +RF   G  +   I PP
Sbjct: 414 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLT--KDYGNSPLHRFKKPGSKNFQNIFPP 471

Query: 453 SCVLHYYNVPLCVTEETFTKLCNDH-EVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVE 511
           S  LH  N+P  V+EE    L + +  V+   K+   D K        L++     +AV+
Sbjct: 472 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK------MALIQMGSVEEAVQ 525

Query: 512 ALTALNHYQIRVPNGSNPYTLKLCFSTSS 540
           AL  L+++ +    G N + L++ FS S+
Sbjct: 526 ALIDLHNHDL----GEN-HHLRVSFSKST 549


>gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens]
          Length = 531

 Score =  169 bits (428), Expect = 6e-42
 Identities = 141/498 (28%), Positives = 233/498 (46%), Gaps = 57/498 (11%)

Query: 75  SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE 134
           S V+H+R L   V E +++     FG +  ++M+  K QA +E    ++A   V + +  
Sbjct: 58  SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAV 117

Query: 135 PVYIAGQQAFFNYSTSKR-----------------ITRPGNTDDPSGG------------ 165
             ++  Q  +  YS  K                  +T     + P  G            
Sbjct: 118 TPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQ 177

Query: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKAKAA 224
           + VL + I N  YP+T+DVL+ + +  G V +I+ F K N  QA++++   + AQ+AK A
Sbjct: 178 SPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLA 237

Query: 225 LNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPS 284
           L+G +IY  CCTL+I++++   LNV  N++ S DYT+P     D   G  + A+     +
Sbjct: 238 LDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRP-----DLPSGDGQPALDPAIAA 292

Query: 285 SFRHDG--YGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGL 342
           +F  +       G L PL       +          +P  S+    GGN   +V++VS L
Sbjct: 293 AFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSA----GGN---TVLLVSNL 345

Query: 343 HQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRL 402
           ++  +    +F LF +YG++++VK +     +AL++M D    + A+ HLN  K++GK +
Sbjct: 346 NEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKII 405

Query: 403 NVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVP 462
            V +SK  +V   +  E  D     KDF  S  +RF   G  +   I PPS  LH  N+P
Sbjct: 406 RVTLSKHQTVQLPR--EGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIP 463

Query: 463 LCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIR 522
             V EE    L  +    T   +K F     A     LL+     +A++AL  L++Y + 
Sbjct: 464 PSVAEEDLRTLFANTGG-TVKAFKFFQDHKMA-----LLQMATVEEAIQALIDLHNYNL- 516

Query: 523 VPNGSNPYTLKLCFSTSS 540
              G N + L++ FS S+
Sbjct: 517 ---GEN-HHLRVSFSKST 530


>gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens]
          Length = 552

 Score =  153 bits (386), Expect = 4e-37
 Identities = 135/509 (26%), Positives = 235/509 (46%), Gaps = 54/509 (10%)

Query: 73  SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAA 132
           S S V+H+R +   V EA+++     FG +  ++M+  K QA +E  + ++A   V +  
Sbjct: 56  SPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYT 115

Query: 133 DEPVYIAGQQAFFNYSTSKRI--------------------TRPGN---TDDPS------ 163
               ++  Q  +  YS  + +                     + G+   +  PS      
Sbjct: 116 PITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVL 175

Query: 164 -GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KRNGIQAMVEFESVLCAQKA 221
            G + VL + I+N  YP+T++VL+ + +  G V +I+ F K N  QA++++   + A  A
Sbjct: 176 PGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYA 235

Query: 222 KAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQ---RQAI 278
           K AL+G +IY  CCTL+I++++ T LNV  N++ S D+T+  L   D     +     A 
Sbjct: 236 KMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAF 295

Query: 279 LGEHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYM-------HGGN 331
                 S  + G     P +  P    +     P  +  PL   SS+           G 
Sbjct: 296 GAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALG-PLTITSSAVTGRMAIPGASGI 354

Query: 332 PSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTH 391
           P  SV++V+ L+   +    +F LF +YG++ +VK M      ALV+M D    + A+ H
Sbjct: 355 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 414

Query: 392 LNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQP 451
           L+  +L+GK L   +SK  +V   +  + + G +  KDF+ S  +RF   G  +   I P
Sbjct: 415 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLT--KDFSNSPLHRFKKPGSKNFQNIFP 472

Query: 452 PSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVE 511
           PS  LH  N+P  VT +    L     +      K F      + ++ L++     +A++
Sbjct: 473 PSATLHLSNIPPSVTVDDLKNLF----IEAGCSVKAFKFFQKDRKMA-LIQLGSVEEAIQ 527

Query: 512 ALTALNHYQIRVPNGSNPYTLKLCFSTSS 540
           AL  L+++ +    G N + L++ FS S+
Sbjct: 528 ALIELHNHDL----GEN-HHLRVSFSKST 551


>gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Homo
           sapiens]
          Length = 197

 Score = 75.5 bits (184), Expect = 1e-13
 Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 14/190 (7%)

Query: 352 VFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHS 411
           +F LF +YG++++VK +      ALV+M D    + A++HLN  KL GK + + +SK  +
Sbjct: 20  LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 79

Query: 412 VVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFT 471
           V   +  + + G +  KD+  S  +RF   G  +   I PPS  LH  N+P  V+EE   
Sbjct: 80  VQLPREGQEDQGLT--KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 137

Query: 472 KLCNDH-EVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPY 530
            L + +  V+   K+   D K        L++     +AV+AL  L+++ +    G N +
Sbjct: 138 VLFSSNGGVVKGFKFFQKDRK------MALIQMGSVEEAVQALIDLHNHDL----GEN-H 186

Query: 531 TLKLCFSTSS 540
            L++ FS S+
Sbjct: 187 HLRVSFSKST 196


>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 6 [Homo sapiens]
          Length = 562

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 16/147 (10%)

Query: 156 PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESV 215
           P    DP    KV +L ++N    +T ++L    +  GK++R+   K+    A + F+  
Sbjct: 325 PIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV---KKLKDYAFIHFDER 381

Query: 216 LCAQKAKAALNGADIYAGCCTLKIEYARP---------TRLNVIRND--NDSWDYTKPYL 264
             A KA   +NG D+      ++I +A+P          +    +N   +D + Y  P++
Sbjct: 382 DGAVKAMEEMNGKDLEGE--NIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439

Query: 265 GRRDRGKGRQRQAILGEHPSSFRHDGY 291
               RG+GR  +   G  P  + ++ Y
Sbjct: 440 PPPTRGRGRGGRGGYGYPPDYYGYEDY 466


>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 2 [Homo sapiens]
          Length = 464

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 16/147 (10%)

Query: 156 PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESV 215
           P    DP    KV +L ++N    +T ++L    +  GK++R+   K+    A + F+  
Sbjct: 227 PIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV---KKLKDYAFIHFDER 283

Query: 216 LCAQKAKAALNGADIYAGCCTLKIEYARP---------TRLNVIRND--NDSWDYTKPYL 264
             A KA   +NG D+      ++I +A+P          +    +N   +D + Y  P++
Sbjct: 284 DGAVKAMEEMNGKDLEGE--NIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 341

Query: 265 GRRDRGKGRQRQAILGEHPSSFRHDGY 291
               RG+GR  +   G  P  + ++ Y
Sbjct: 342 PPPTRGRGRGGRGGYGYPPDYYGYEDY 368


>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 5 [Homo sapiens]
          Length = 561

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 16/147 (10%)

Query: 156 PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESV 215
           P    DP    KV +L ++N    +T ++L    +  GK++R+   K+    A + F+  
Sbjct: 325 PIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV---KKLKDYAFIHFDER 381

Query: 216 LCAQKAKAALNGADIYAGCCTLKIEYARP---------TRLNVIRND--NDSWDYTKPYL 264
             A KA   +NG D+      ++I +A+P          +    +N   +D + Y  P++
Sbjct: 382 DGAVKAMEEMNGKDLEGE--NIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439

Query: 265 GRRDRGKGRQRQAILGEHPSSFRHDGY 291
               RG+GR  +   G  P  + ++ Y
Sbjct: 440 PPPTRGRGRGGRGGYGYPPDYYGYEDY 466


>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 1 [Homo sapiens]
          Length = 623

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 16/147 (10%)

Query: 156 PGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESV 215
           P    DP    KV +L ++N    +T ++L    +  GK++R+   K+    A + F+  
Sbjct: 325 PIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV---KKLKDYAFIHFDER 381

Query: 216 LCAQKAKAALNGADIYAGCCTLKIEYARP---------TRLNVIRND--NDSWDYTKPYL 264
             A KA   +NG D+      ++I +A+P          +    +N   +D + Y  P++
Sbjct: 382 DGAVKAMEEMNGKDLEGE--NIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHM 439

Query: 265 GRRDRGKGRQRQAILGEHPSSFRHDGY 291
               RG+GR  +   G  P  + ++ Y
Sbjct: 440 PPPTRGRGRGGRGGYGYPPDYYGYEDY 466


>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
          Length = 2440

 Score = 37.4 bits (85), Expect = 0.035
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 13  EEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGR 58
           EE+++ +  +K    E+ +ID +AEE E R +ATPRG       GR
Sbjct: 535 EEEKDEKEDSKENTKEKDKIDGTAEETEEREQATPRGRKTANSQGR 580


>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 3 [Homo sapiens]
          Length = 527

 Score = 36.6 bits (83), Expect = 0.060
 Identities = 32/143 (22%), Positives = 64/143 (44%), Gaps = 16/143 (11%)

Query: 160 DDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQ 219
           +D     +V +L ++N    +T ++L    +  GK++R+   K+    A + F+    A 
Sbjct: 294 EDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV---KKLKDYAFIHFDERDGAV 350

Query: 220 KAKAALNGADIYAGCCTLKIEYARP---------TRLNVIRND--NDSWDYTKPYLGRRD 268
           KA   +NG D+      ++I +A+P          +    +N   +D + Y  P++    
Sbjct: 351 KAMEEMNGKDLEGE--NIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPT 408

Query: 269 RGKGRQRQAILGEHPSSFRHDGY 291
           RG+GR  +   G  P  + ++ Y
Sbjct: 409 RGRGRGGRGGYGYPPDYYGYEDY 431


>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
           protein isoform 4 [Homo sapiens]
          Length = 588

 Score = 36.6 bits (83), Expect = 0.060
 Identities = 32/143 (22%), Positives = 64/143 (44%), Gaps = 16/143 (11%)

Query: 160 DDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQ 219
           +D     +V +L ++N    +T ++L    +  GK++R+   K+    A + F+    A 
Sbjct: 294 EDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERV---KKLKDYAFIHFDERDGAV 350

Query: 220 KAKAALNGADIYAGCCTLKIEYARP---------TRLNVIRND--NDSWDYTKPYLGRRD 268
           KA   +NG D+      ++I +A+P          +    +N   +D + Y  P++    
Sbjct: 351 KAMEEMNGKDLEGE--NIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPT 408

Query: 269 RGKGRQRQAILGEHPSSFRHDGY 291
           RG+GR  +   G  P  + ++ Y
Sbjct: 409 RGRGRGGRGGYGYPPDYYGYEDY 431


>gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo
           sapiens]
          Length = 631

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 18/47 (38%), Positives = 22/47 (46%)

Query: 10  ETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGG 56
           E  EED E + +    + EE E +   EE E   E  PR G  G GG
Sbjct: 112 EREEEDEEIQEEGGEEEEEEEEEEEEEEEEEEEEEEQPRAGPQGSGG 158


>gi|51243065 zinc finger CCHC-type and RNA binding motif 1 [Homo
           sapiens]
          Length = 217

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 327 MHGG-NPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKT-----IPGTALVEMG 380
           M GG  PS S V VS L    +  + ++ +F  YG + KV  MK        G A +   
Sbjct: 1   MSGGLAPSKSTVYVSNL-PFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFL 59

Query: 381 DEYAVERAVTHLNNVKLFGKRLNVCVS 407
           D+ + +     +NN +LFG+ +   ++
Sbjct: 60  DKDSAQNCTRAINNKQLFGRVIKASIA 86


>gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [Homo
            sapiens]
          Length = 2564

 Score = 34.7 bits (78), Expect = 0.23
 Identities = 16/27 (59%), Positives = 17/27 (62%)

Query: 42   RREATPRGGGDGGGGGRSFSQPEAGGS 68
            RR   PR GG+GGG  RS S P  GGS
Sbjct: 2381 RRRPRPREGGEGGGSRRSRSAPAQGGS 2407


>gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2
           [Homo sapiens]
          Length = 201

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 46  TPRGGGDGGGGG--RSFSQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTIC 103
           T RGGG GGGGG  R    P +  S ++V VS      GL  S    DL + + + G +C
Sbjct: 95  TGRGGGGGGGGGAPRGRYGPPSRRSENRVVVS------GLPPSGSWQDLKDHMREAGDVC 148

Query: 104 Y 104
           Y
Sbjct: 149 Y 149


>gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Homo
           sapiens]
          Length = 248

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 46  TPRGGGDGGGGG--RSFSQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTIC 103
           T RGGG GGGGG  R    P +  S ++V VS      GL  S    DL + + + G +C
Sbjct: 95  TGRGGGGGGGGGAPRGRYGPPSRRSENRVVVS------GLPPSGSWQDLKDHMREAGDVC 148

Query: 104 Y 104
           Y
Sbjct: 149 Y 149


>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
          Length = 405

 Score = 33.5 bits (75), Expect = 0.51
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 114 ALVEFENIDSAKECVTFAADE----PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVL 169
           A VEF  I S    +          P+ +   QA  N     R+    N      G  + 
Sbjct: 176 AYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKN-----RLAAMANNLQKGNGGPMR 230

Query: 170 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-----RNGIQAMVEFESVLCAQKAKAA 224
           L  + +  + IT D+L  +  P GK+  IV+ K     R+     + F    CA++A   
Sbjct: 231 LY-VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 289

Query: 225 LNGADI 230
           LNG ++
Sbjct: 290 LNGFEL 295


>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
          Length = 439

 Score = 33.5 bits (75), Expect = 0.51
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 114 ALVEFENIDSAKECVTFAADE----PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVL 169
           A VEF  I S    +          P+ +   QA  N     R+    N      G  + 
Sbjct: 210 AYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKN-----RLAAMANNLQKGNGGPMR 264

Query: 170 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-----RNGIQAMVEFESVLCAQKAKAA 224
           L  + +  + IT D+L  +  P GK+  IV+ K     R+     + F    CA++A   
Sbjct: 265 LY-VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 323

Query: 225 LNGADI 230
           LNG ++
Sbjct: 324 LNGFEL 329


>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
          Length = 423

 Score = 33.5 bits (75), Expect = 0.51
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 114 ALVEFENIDSAKECVTFAADE----PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVL 169
           A VEF  I S    +          P+ +   QA  N     R+    N      G  + 
Sbjct: 194 AYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKN-----RLAAMANNLQKGNGGPMR 248

Query: 170 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-----RNGIQAMVEFESVLCAQKAKAA 224
           L  + +  + IT D+L  +  P GK+  IV+ K     R+     + F    CA++A   
Sbjct: 249 LY-VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 307

Query: 225 LNGADI 230
           LNG ++
Sbjct: 308 LNGFEL 313


>gi|148233596 LPS-responsive vesicle trafficking, beach and anchor
          containing [Homo sapiens]
          Length = 2863

 Score = 33.5 bits (75), Expect = 0.51
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 40 ENRREATPRGGGDGGGGGRSFSQPEAGGSHHKVSVSPVVHVRGL 83
          +NR  + P  G DGGGGGR  +  E G     +S+ P + +RG+
Sbjct: 5  DNRVPSPPPTGDDGGGGGREETPTEGGA----LSLKPGLPIRGI 44


>gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo
           sapiens]
          Length = 1826

 Score = 33.1 bits (74), Expect = 0.66
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 15/71 (21%)

Query: 2   SSSSSSPRETYEED-----REYESQAKRLKTEEGEIDYSAEEGEN----------RREAT 46
           SSSSSSP    EED      +  +    L T    + + +E GE+           + + 
Sbjct: 301 SSSSSSPMNKAEEDGLSKMEDSTTSTGALATSSSSLGFESESGESEGCQAVGGEGEKISG 360

Query: 47  PRGGGDGGGGG 57
             GGG GGGGG
Sbjct: 361 GGGGGKGGGGG 371


>gi|113416182 PREDICTED: hypothetical protein LOC285556 [Homo
           sapiens]
          Length = 1826

 Score = 33.1 bits (74), Expect = 0.66
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 15/71 (21%)

Query: 2   SSSSSSPRETYEED-----REYESQAKRLKTEEGEIDYSAEEGEN----------RREAT 46
           SSSSSSP    EED      +  +    L T    + + +E GE+           + + 
Sbjct: 301 SSSSSSPMNKAEEDGLSKMEDSTTSTGALATSSSSLGFESESGESEGCQAVGGEGEKISG 360

Query: 47  PRGGGDGGGGG 57
             GGG GGGGG
Sbjct: 361 GGGGGKGGGGG 371


>gi|113415686 PREDICTED: hypothetical protein LOC285556 [Homo
           sapiens]
          Length = 1826

 Score = 33.1 bits (74), Expect = 0.66
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 15/71 (21%)

Query: 2   SSSSSSPRETYEED-----REYESQAKRLKTEEGEIDYSAEEGEN----------RREAT 46
           SSSSSSP    EED      +  +    L T    + + +E GE+           + + 
Sbjct: 301 SSSSSSPMNKAEEDGLSKMEDSTTSTGALATSSSSLGFESESGESEGCQAVGGEGEKISG 360

Query: 47  PRGGGDGGGGG 57
             GGG GGGGG
Sbjct: 361 GGGGGKGGGGG 371


>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
          Length = 332

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 49  GGGDGGGGGRSFSQPEAGGSHH--KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVM 106
           GG  GGGGG S + PE         ++ SP   V  +CE++ E   +E L +F  +  + 
Sbjct: 60  GGAGGGGGGGSRAPPEELSMFQLPTLNFSP-EQVASVCETLEETGDIERLGRF--LWSLP 116

Query: 107 MMPFKRQALVEFENIDSAKECVTF 130
           + P   +A+ + E+I  A+  V F
Sbjct: 117 VAPGACEAINKHESILRARAVVAF 140


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,833,625
Number of Sequences: 37866
Number of extensions: 1049583
Number of successful extensions: 6009
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 5622
Number of HSP's gapped (non-prelim): 310
length of query: 542
length of database: 18,247,518
effective HSP length: 107
effective length of query: 435
effective length of database: 14,195,856
effective search space: 6175197360
effective search space used: 6175197360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.