SYNCRIP 15664

Name: SYNCRIP	Sequence: fasta or formatted (464aa)		NCBI GI: 228008396
Description: synaptotagmin binding, cytoplasmic RNA interacting protein isoform 2		Referenced in: hnRNP RNA Editing and Other RNA Modifications
Other entries for this name: alt prot [623aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 1 alt prot [561aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 5 alt prot [588aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 4 alt prot [527aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 3 alt prot [562aa] synaptotagmin binding, cytoplasmic RNA interacting protein isoform 6
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.3 34 2 C cysteine 0.6 3 1 D aspartate 6.2 29 2 E glutamate 7.3 34 2 F phenylalanine 3.4 16 1 G glycine 12.7 59 2 H histidine 1.5 7 1 I isoleucine 3.2 15 1 K lysine 8.0 37 3 L leucine 5.4 25 2 M methionine 1.9 9 2 N asparagine 2.8 13 2 P proline 6.2 29 3 Q glutamine 4.5 21 3 R arginine 8.2 38 3 S serine 3.2 15 2 T threonine 3.9 18 2 V valine 6.0 28 1 W tryptophan 0.6 3 1 Y tyrosine 6.7 31 4			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 1.000 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.993 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.972 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.903 synaptotagmin binding, cytoplasmic RNA interacting ... SYNCRIP 0.875 synaptotagmin binding, cytoplasmic RNA interacting ... HNRNPR 0.809 heterogeneous nuclear ribonucleoprotein R isoform 4... HNRNPR 0.809 heterogeneous nuclear ribonucleoprotein R isoform 2 [... HNRNPR 0.803 heterogeneous nuclear ribonucleoprotein R isoform 3... HNRNPR 0.803 heterogeneous nuclear ribonucleoprotein R isoform 1... RBM47 0.353 RNA binding motif protein 47 isoform a RBM47 0.335 RNA binding motif protein 47 isoform b A1CF 0.329 apobec-1 complementation factor isoform 2 A1CF 0.329 apobec-1 complementation factor isoform 1 RBM46 0.328 RNA binding motif protein 46 A1CF 0.312 apobec-1 complementation factor isoform 3 DND1 0.116 dead end homolog 1 PABPC4L 0.083 poly(A) binding protein, cytoplasmic 4-like PABPC4 0.073 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... PABPC4 0.073 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... PABPC4 0.073 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... PABPC3 0.068 poly(A) binding protein, cytoplasmic 3 PABPC1 0.065 poly(A) binding protein, cytoplasmic 1 PABPC1L 0.065 poly(A)-binding protein, cytoplasmic 1-like BRUNOL5 0.061 bruno-like 5, RNA binding protein isoform 1 HNRNPA1L2 0.056 heterogeneous nuclear ribonucleoprotein A1-like [Hom... HNRNPA1L2 0.056 heterogeneous nuclear ribonucleoprotein A1-like [Hom... HNRNPA1 0.055 heterogeneous nuclear ribonucleoprotein A1 isoform a ... BRUNOL4 0.055 bruno-like 4, RNA binding protein isoform 4 TNRC4 0.055 trinucleotide repeat containing 4 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.