Search of human proteins with 19923715

Search of human proteins with 19923715

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|19923715 interleukin 17D precursor [Homo sapiens]
         (202 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|19923715 interleukin 17D precursor [Homo sapiens]                  424   e-119
gi|7019435 interleukin 17C [Homo sapiens]                              75   4e-14
gi|7657228 interleukin 17B precursor [Homo sapiens]                    71   7e-13
gi|16418375 interleukin 17F precursor [Homo sapiens]                   62   3e-10
gi|4504651 interleukin 17A precursor [Homo sapiens]                    53   2e-07
gi|27477081 interleukin 25 isoform 2 [Homo sapiens]                    47   1e-05
gi|12232485 interleukin 25 isoform 1 precursor [Homo sapiens]          47   1e-05
gi|239751624 PREDICTED: hypothetical protein XP_002347938 [Homo ...    30   1.1  
gi|239746135 PREDICTED: hypothetical protein XP_002344205 [Homo ...    30   1.1  
gi|217416343 fibrosin-like 1 [Homo sapiens]                            30   1.1  
gi|30089966 CDC42 effector protein 5 [Homo sapiens]                    30   1.8  
gi|169211260 PREDICTED: similar to hCG2042422 [Homo sapiens]           29   2.4  
gi|169211653 PREDICTED: hypothetical protein [Homo sapiens]            29   2.4  
gi|169210872 PREDICTED: similar to hCG2042422 [Homo sapiens]           29   2.4  
gi|239743164 PREDICTED: hypothetical protein [Homo sapiens]            29   3.1  
gi|239508826 PREDICTED: hypothetical protein [Homo sapiens]            29   3.1  
gi|31542509 ADP-dependent glucokinase [Homo sapiens]                   29   3.1  
gi|223029463 fibrinogen C domain containing 1 [Homo sapiens]           28   4.1  
gi|223029461 fibrinogen C domain containing 1 [Homo sapiens]           28   4.1  
gi|239753576 PREDICTED: hypothetical protein [Homo sapiens]            28   4.1  
gi|239752133 PREDICTED: hypothetical protein [Homo sapiens]            28   4.1  
gi|239748084 PREDICTED: hypothetical protein [Homo sapiens]            28   4.1  
gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]            28   4.1  
gi|37655169 ring finger protein 135 isoform 2 [Homo sapiens]           28   5.3  
gi|37655167 ring finger protein 135 isoform 1 [Homo sapiens]           28   5.3  
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ...    28   5.3  
gi|47827222 solute carrier family 35, member E4 [Homo sapiens]         28   5.3  
gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]            28   6.9  
gi|55750053 atrophin-1 [Homo sapiens]                                  28   6.9  
gi|55750041 atrophin-1 [Homo sapiens]                                  28   6.9  

>gi|19923715 interleukin 17D precursor [Homo sapiens]
          Length = 202

 Score =  424 bits (1089), Expect = e-119
 Identities = 202/202 (100%), Positives = 202/202 (100%)

Query: 1   MLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQLYGRLAAGVLSAFHHTLQL 60
           MLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQLYGRLAAGVLSAFHHTLQL
Sbjct: 1   MLVAGFLLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQLYGRLAAGVLSAFHHTLQL 60

Query: 61  GPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCLCRGCL 120
           GPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCLCRGCL
Sbjct: 61  GPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCLCRGCL 120

Query: 121 TGLFGEEDVRFRSAPVYMPTVVLRRTPACAGGRSVYTEAYVTIPVGCTCVPEPEKDADSI 180
           TGLFGEEDVRFRSAPVYMPTVVLRRTPACAGGRSVYTEAYVTIPVGCTCVPEPEKDADSI
Sbjct: 121 TGLFGEEDVRFRSAPVYMPTVVLRRTPACAGGRSVYTEAYVTIPVGCTCVPEPEKDADSI 180

Query: 181 NSSIDKQGAKLLLGPNDAPAGP 202
           NSSIDKQGAKLLLGPNDAPAGP
Sbjct: 181 NSSIDKQGAKLLLGPNDAPAGP 202


>gi|7019435 interleukin 17C [Homo sapiens]
          Length = 197

 Score = 75.1 bits (183), Expect = 4e-14
 Identities = 37/92 (40%), Positives = 48/92 (52%), Gaps = 7/92 (7%)

Query: 86  TNLRSVSPWAYRISYDPARYPRYLPEAYCLCRGCLTGLFGEEDVRFRSAPVYMPTVVLRR 145
           T+ RS+SPW YR+  D  RYP+ L  A CLCRGC+    G E     S  +    +VLRR
Sbjct: 101 THQRSISPWRYRVDTDEDRYPQKLAFAECLCRGCIDARTGRETAALNSVRLLQSLLVLRR 160

Query: 146 TPACAGGRSVYTEA-------YVTIPVGCTCV 170
            P    G  + T         ++ +PVGCTCV
Sbjct: 161 RPCSRDGSGLPTPGAFAFHTEFIHVPVGCTCV 192


>gi|7657228 interleukin 17B precursor [Homo sapiens]
          Length = 180

 Score = 70.9 bits (172), Expect = 7e-13
 Identities = 38/87 (43%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 86  TNLRSVSPWAYRISYDPARYPRYLPEAYCLCRGCLTGLFGEEDVRFRSAPVYMPTVVLRR 145
           +N RS+SPW Y I++DP+R P  LPEA CLC GC+     +ED    S PV+    V RR
Sbjct: 93  SNKRSLSPWGYSINHDPSRIPVDLPEARCLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRR 152

Query: 146 --TPACAGGRSVYTEAYVTIPVGCTCV 170
              P    G         TI VGCTC+
Sbjct: 153 LCPPPPRTGPCRQRAVMETIAVGCTCI 179


>gi|16418375 interleukin 17F precursor [Homo sapiens]
          Length = 163

 Score = 62.0 bits (149), Expect = 3e-10
 Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 89  RSVSPWAYRISYDPARYPRYLPEAYCLCRGCLTGLFGEEDVRFRSAPVYMPTVVLRRTPA 148
           RS SPW Y +++DP RYP  + +A C   GC+    G+ED+   S P+   T+V+RR   
Sbjct: 77  RSTSPWNYTVTWDPNRYPSEVVQAQCRNLGCINAQ-GKEDISMNSVPIQQETLVVRRKH- 134

Query: 149 CAGGRSVYTEAYVTIPVGCTCV 170
             G    +    V + VGCTCV
Sbjct: 135 -QGCSVSFQLEKVLVTVGCTCV 155


>gi|4504651 interleukin 17A precursor [Homo sapiens]
          Length = 155

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 89  RSVSPWAYRISYDPARYPRYLPEAYCLCRGCLTGLFGEEDVRFRSAPVYMPTVVLRRTPA 148
           RS SPW    + DP RYP  + EA C   GC+    G  D    S P+    +VLRR P 
Sbjct: 69  RSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINA-DGNVDYHMNSVPIQQEILVLRREPP 127

Query: 149 -CAGGRSVYTEAYVTIPVGCTCV 170
            C      +    + + VGCTCV
Sbjct: 128 HCPNS---FRLEKILVSVGCTCV 147


>gi|27477081 interleukin 25 isoform 2 [Homo sapiens]
          Length = 161

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 10/120 (8%)

Query: 57  TLQLGPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCLC 116
           T+ + P E AR    P   R ++     P N R++SPW Y +  D  R P+ L  A CLC
Sbjct: 40  TVPVPPLEPARPNRHPESCRASEDG---PLNSRAISPWRYELDRDLNRLPQDLYHARCLC 96

Query: 117 RGCLTGLFGEE-DVRFRSAPVYMPTVVLRRTPACAGGRSVY-----TEAYVTIPVGCTCV 170
             C++   G   D R  S  +Y    V  R P C G +  +           + + C CV
Sbjct: 97  PHCVSLQTGSHMDPRGNSELLYHNQTVFYRRP-CHGEKGTHKGYCLERRLYRVSLACVCV 155


>gi|12232485 interleukin 25 isoform 1 precursor [Homo sapiens]
          Length = 177

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 10/120 (8%)

Query: 57  TLQLGPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPRYLPEAYCLC 116
           T+ + P E AR    P   R ++     P N R++SPW Y +  D  R P+ L  A CLC
Sbjct: 56  TVPVPPLEPARPNRHPESCRASEDG---PLNSRAISPWRYELDRDLNRLPQDLYHARCLC 112

Query: 117 RGCLTGLFGEE-DVRFRSAPVYMPTVVLRRTPACAGGRSVY-----TEAYVTIPVGCTCV 170
             C++   G   D R  S  +Y    V  R P C G +  +           + + C CV
Sbjct: 113 PHCVSLQTGSHMDPRGNSELLYHNQTVFYRRP-CHGEKGTHKGYCLERRLYRVSLACVCV 171


>gi|239751624 PREDICTED: hypothetical protein XP_002347938 [Homo
           sapiens]
          Length = 244

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 41  QLYGRLAAGVLSAFHHTLQLG----PREQARNASCPAGGRPADRRFRPPTNLRSVS 92
           +L GR+A   L+  H  LQL     PR Q R  + P G RP  R + PP+  R ++
Sbjct: 131 RLVGRVAQAQLAHAH--LQLAQPARPRPQPRTRAPPPGPRPTARTWGPPSPGRQLA 184


>gi|239746135 PREDICTED: hypothetical protein XP_002344205 [Homo
           sapiens]
          Length = 244

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 41  QLYGRLAAGVLSAFHHTLQLG----PREQARNASCPAGGRPADRRFRPPTNLRSVS 92
           +L GR+A   L+  H  LQL     PR Q R  + P G RP  R + PP+  R ++
Sbjct: 131 RLVGRVAQAQLAHAH--LQLAQPARPRPQPRTRAPPPGPRPTARTWGPPSPGRQLA 184


>gi|217416343 fibrosin-like 1 [Homo sapiens]
          Length = 1045

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 22/79 (27%), Positives = 30/79 (37%)

Query: 7   LLALPPSWAAGAPRAGRRPARPRGCADRPEELLEQLYGRLAAGVLSAFHHTLQLGPREQA 66
           L   PP  AA APR  R P R R  +   EE +   +   +   L A    + L P E+ 
Sbjct: 49  LRGAPPRGAAPAPRTARPPRRRRRESSSQEEEVIDGFAIASFSTLEALEKDMALKPHERK 108

Query: 67  RNASCPAGGRPADRRFRPP 85
                    +P +    PP
Sbjct: 109 EKWERRLIKKPRESETCPP 127


>gi|30089966 CDC42 effector protein 5 [Homo sapiens]
          Length = 148

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 11  PPSWAAGAPRAGRRPARPRGCADRPEELLEQLYGRLAAGVLSAFHHTLQLGPREQAR--- 67
           P +  AGAPR+   PA P+  A  P + L   +  L   +L A    +     E A    
Sbjct: 60  PRAPPAGAPRSPPPPAVPQSAAPSPADPLLSFHLDLGPSMLDAVLGVMDAARPEAAAAKP 119

Query: 68  NASCPAGGRPADRRFRPPTNL 88
           +A    G +P   R RP  +L
Sbjct: 120 DAEPRPGTQPPQARCRPNADL 140


>gi|169211260 PREDICTED: similar to hCG2042422 [Homo sapiens]
          Length = 242

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)

Query: 11 PPSWAAGAPRAGRRPARPR 29
          PP W  GAPRAG+R  R R
Sbjct: 56 PPRWPEGAPRAGQRLRRGR 74


>gi|169211653 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 242

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)

Query: 11 PPSWAAGAPRAGRRPARPR 29
          PP W  GAPRAG+R  R R
Sbjct: 56 PPRWPEGAPRAGQRLRRGR 74


>gi|169210872 PREDICTED: similar to hCG2042422 [Homo sapiens]
          Length = 242

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)

Query: 11 PPSWAAGAPRAGRRPARPR 29
          PP W  GAPRAG+R  R R
Sbjct: 56 PPRWPEGAPRAGQRLRRGR 74


>gi|239743164 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 222

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 14  WAAGAPRAGRRPARPRGCADRPEEL-LEQLYGRLAAGVLSAFHHTLQLGPREQARNASCP 72
           W  G P  G   A P+    R E+L LE L    A G  +A    L LG    A      
Sbjct: 81  WGLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGE-AAERPELGLGRMIWACRGHRE 139

Query: 73  AGGRPADRRFRPPTNLRSVSPWAYRISYDPARYP--RYLPEAYCLCRGC 119
           AG  P             ++ WAYR   +    P   YL   +  CRGC
Sbjct: 140 AGAVPGQAYL--------MTVWAYRGRREAGAVPGQAYLTTVWS-CRGC 179


>gi|239508826 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 222

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 33/109 (30%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 14  WAAGAPRAGRRPARPRGCADRPEEL-LEQLYGRLAAGVLSAFHHTLQLGPREQARNASCP 72
           W  G P  G   A P+    R E+L LE L    A G  +A    L LG    A      
Sbjct: 81  WGLGRPPGGMNWAGPKEATGRQEDLGLEILIQTFAPGE-AAERPELGLGRMIWACRGHRE 139

Query: 73  AGGRPADRRFRPPTNLRSVSPWAYRISYDPARYP--RYLPEAYCLCRGC 119
           AG  P             ++ WAYR   +    P   YL   +  CRGC
Sbjct: 140 AGAVPGQAYL--------MTVWAYRGRREAGAVPGQAYLTTVWS-CRGC 179


>gi|31542509 ADP-dependent glucokinase [Homo sapiens]
          Length = 496

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 160 YVTIPVGCTCVPEPEKDADSINSSIDKQGAKLLLGPNDAPAGP 202
           ++ + VGC  + EPE    ++ S      + L LGP  AP GP
Sbjct: 12  FLALAVGCVFLLEPELPGSALRSL----WSSLCLGPAPAPPGP 50


>gi|223029463 fibrinogen C domain containing 1 [Homo sapiens]
          Length = 461

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 12  PSWAAGAPRAGRRPARPRGCA--DRPEELLEQLY-GRLAAGVLSAF 54
           P   A   RA  R  RPRGCA   RP + L+ L  G+   GV S F
Sbjct: 216 PRNKADLQRAPARGTRPRGCATGSRPRDCLDVLLSGQQDDGVYSVF 261


>gi|223029461 fibrinogen C domain containing 1 [Homo sapiens]
          Length = 461

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 12  PSWAAGAPRAGRRPARPRGCA--DRPEELLEQLY-GRLAAGVLSAF 54
           P   A   RA  R  RPRGCA   RP + L+ L  G+   GV S F
Sbjct: 216 PRNKADLQRAPARGTRPRGCATGSRPRDCLDVLLSGQQDDGVYSVF 261


>gi|239753576 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 423

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 25/118 (21%)

Query: 9   ALPPSWAAGAPRAGRRPARPRG-------------------CADRPEELLEQLYGRLAAG 49
           A+P +W     R GRR  RP G                   C+  P  LL  L    A G
Sbjct: 301 AVPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAGWLGTATLACSLPPHALL--LPSEAARG 358

Query: 50  VLSAFHHTLQLGPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPR 107
             + +  T  +G  ++ R+A+   G R +D R    T+ +     A R     AR PR
Sbjct: 359 --TEWERT--VGTEDRKRDAALLVGRRDSDGRTDQRTDWQPARVAALRAERSKARIPR 412


>gi|239752133 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 224

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 62  PREQARNASCPAGGRPADRRFRPPTNLRSVS-PWAYRISYDPARYPRY-----LPEAYCL 115
           P   AR +     G+P  +R RPP   R+   P A R+  DP R+ R+     +    C 
Sbjct: 160 PPGNARQSRGVGAGKPEPQR-RPPRGSRAARRPRARRVFTDPRRHTRHRTRRSVAPPGCF 218

Query: 116 CRGC 119
           C  C
Sbjct: 219 CPAC 222


>gi|239748084 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 423

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 25/118 (21%)

Query: 9   ALPPSWAAGAPRAGRRPARPRG-------------------CADRPEELLEQLYGRLAAG 49
           A+P +W     R GRR  RP G                   C+  P  LL  L    A G
Sbjct: 301 AVPAAWEGTDRRRGRRRRRPSGRNGTEGSTKAGWLGTATLACSLPPHALL--LPSEAARG 358

Query: 50  VLSAFHHTLQLGPREQARNASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYPR 107
             + +  T  +G  ++ R+A+   G R +D R    T+ +     A R     AR PR
Sbjct: 359 --TEWERT--VGTEDRKRDAALLVGRRDSDGRTDQRTDWQPARVAALRAERSKARIPR 412


>gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 411

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 62  PREQARNASCPAGGRPADRRFRPPTNLRSVS-PWAYRISYDPARYPRY-----LPEAYCL 115
           P   AR +     G+P  +R RPP   R+   P A R+  DP R+ R+     +    C 
Sbjct: 347 PPGNARQSRGVGAGKPEPQR-RPPRGSRAARRPRARRVFTDPRRHTRHRTRRSVAPPGCF 405

Query: 116 CRGC 119
           C  C
Sbjct: 406 CPAC 409


>gi|37655169 ring finger protein 135 isoform 2 [Homo sapiens]
          Length = 210

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 105 YPRYLPEAYCLCRGCLTGLFGEEDVRFRSAP 135
           +P  LP  +  CR CL  L+G  D R  + P
Sbjct: 30  WPATLPCGHSFCRHCLEALWGARDARRWACP 60


>gi|37655167 ring finger protein 135 isoform 1 [Homo sapiens]
          Length = 432

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 105 YPRYLPEAYCLCRGCLTGLFGEEDVRFRSAP 135
           +P  LP  +  CR CL  L+G  D R  + P
Sbjct: 30  WPATLPCGHSFCRHCLEALWGARDARRWACP 60


>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
            sapiens]
          Length = 5537

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 31   CADRPEELLEQLYGRLAAGVLSAFHHTLQLGPREQARNASCPAGGRP----ADRRFRPPT 86
            CA  P  L    + R+ A   S       L PR  +  A CP+   P     D   RPP+
Sbjct: 2396 CALPPRSLPSDPFSRVPASPQSQSSSQSPLTPRPLSAEAFCPSPVTPRFQSPDPYSRPPS 2455

Query: 87   NLRSVSPWA 95
              +S  P+A
Sbjct: 2456 RPQSRDPFA 2464


>gi|47827222 solute carrier family 35, member E4 [Homo sapiens]
          Length = 350

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 5  GFLLALPPSWAAGAPRAGRRPARPR 29
          G   A PP W  G+P+A R+P R R
Sbjct: 24 GAQAAGPPEWPPGSPQALRQPGRAR 48


>gi|169213067 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 12  PSWAAGAP-RAGRRPARPRGCADRPEELL-EQLYGRLAAGVLSAFHHTLQLGPREQARNA 69
           P    G P +AGR    P     RP  L   +   RL     S     L   PR   R+ 
Sbjct: 92  PGRGRGPPNKAGRAAGSPTRVQRRPRPLRPSRAAPRLRGEEPSLLRPQLSRRPRALRRST 151

Query: 70  SCPAGGRPADRR 81
             PA G+  DRR
Sbjct: 152 RVPAAGKGGDRR 163


>gi|55750053 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 69  ASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYP 106
           AS PAG + A     PP   R+ SP AY+ +  P   P
Sbjct: 622 ASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKP 659


>gi|55750041 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 69  ASCPAGGRPADRRFRPPTNLRSVSPWAYRISYDPARYP 106
           AS PAG + A     PP   R+ SP AY+ +  P   P
Sbjct: 622 ASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKP 659


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.139    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,648,848
Number of Sequences: 37866
Number of extensions: 490165
Number of successful extensions: 1389
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1357
Number of HSP's gapped (non-prelim): 40
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.