Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CDC42EP5 Sequence: fasta or formatted (148aa) NCBI GI: 30089966
Description:

CDC42 effector protein 5

Referenced in:

Additional Cell Cycle Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         21           4
 C cysteine            0.7          1           1
 D aspartate           7.4         11           1
 E glutamate           2.7          4           1
 F phenylalanine       2.7          4           1
 G glycine            10.1         15           3
 H histidine           2.7          4           1
 I isoleucine          1.4          2           1
 K lysine              2.7          4           2
 L leucine            10.1         15           2
 M methionine          2.0          3           1
 N asparagine          1.4          2           1
 P proline            18.9         28           4
 Q glutamine           3.4          5           1
 R arginine            7.4         11           1
 S serine              6.1          9           1
 T threonine           2.0          3           1
 V valine              4.1          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CDC42 effector protein 5 
CDC42EP1              0.180   CDC42 effector protein 1 
CDC42EP4              0.158   Cdc42 effector protein 4 
CDC42EP2              0.095   Cdc42 effector protein 2 
CDC42EP3              0.070   Cdc42 effector protein 3 
HCN2                  0.067   hyperpolarization activated cyclic nucleotide-gated...
C9orf86               0.067   Rab-like GTP-binding protein 1 isoform 1 
ZNF318                0.067   zinc finger protein 318 
WASL                  0.067   Wiskott-Aldrich syndrome gene-like protein 
TTMA                  0.067   hypothetical protein LOC645369 
LOC283999             0.063   hypothetical protein LOC283999 
SYNJ1                 0.063   synaptojanin 1 isoform c 
DIAPH2                0.063   diaphanous 2 isoform 12C 
DIAPH2                0.063   diaphanous 2 isoform 156 
LOC100289126          0.060   PREDICTED: hypothetical protein XP_002343381 
SAMD1                 0.060   sterile alpha motif domain containing 1 
ENAH                  0.060   enabled homolog isoform a 
ENAH                  0.060   enabled homolog isoform b 
RAPH1                 0.056   Ras association and pleckstrin homology domains 1 is...
PDCD7                 0.056   programmed cell death 7 
PRR12                 0.056   proline rich 12 
ZFHX4                 0.056   zinc finger homeodomain 4 
PRB4                  0.056   proline-rich protein BstNI subfamily 4 precursor [Ho...
KIAA0754              0.053   hypothetical protein LOC643314 
FMNL2                 0.053   formin-like 2 
WIPF3                 0.053   WAS/WASL interacting protein family, member 3 [Homo...
LMTK3                 0.053   lemur tyrosine kinase 3 
SNIP                  0.053   SNAP25-interacting protein 
PRDM13                0.053   PR domain containing 13 
WAS                   0.049   Wiskott-Aldrich syndrome protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press