ERVWE1 11244

Name: ERVWE1	Sequence: fasta or formatted (538aa)		NCBI GI: 195963433
Description: syncytin precursor		Referenced in: DNA Transposon and Retrovirus-related Sequences
Other entries for this name: alt mRNA [538aa] syncytin precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.5 24 2 C cysteine 3.3 18 2 D aspartate 2.4 13 1 E glutamate 4.3 23 2 F phenylalanine 3.9 21 2 G glycine 6.5 35 3 H histidine 2.2 12 1 I isoleucine 5.2 28 2 K lysine 3.2 17 1 L leucine 11.2 60 4 M methionine 2.4 13 1 N asparagine 4.8 26 2 P proline 7.4 40 3 Q glutamine 4.1 22 1 R arginine 5.4 29 2 S serine 8.6 46 3 T threonine 9.3 50 2 V valine 6.3 34 2 W tryptophan 1.7 9 1 Y tyrosine 3.3 18 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 syncytin precursor ERVWE1 1.000 syncytin precursor HERV-FRD 0.149 syncytin 2 LOC100293101 0.029 PREDICTED: similar to Uncharacterized protein LP905... LOC100290734 0.029 PREDICTED: hypothetical protein XP_002346661 LOC100288413 0.029 PREDICTED: hypothetical protein XP_002342492 ERV3 0.021 endogenous retroviral sequence 3 MUC5AC 0.008 mucin 5AC LOC100131199 0.007 PREDICTED: hypothetical protein MUC6 0.007 mucin 6, gastric DICER1 0.006 dicer1 DICER1 0.006 dicer1 HPSE2 0.006 heparanase 2 WNK2 0.005 WNK lysine deficient protein kinase 2 TTN 0.005 titin isoform N2-A MMD2 0.005 monocyte to macrophage differentiation-associated 2... LRRC37B 0.005 leucine rich repeat containing 37B MAD1L1 0.005 MAD1-like 1 protein MAD1L1 0.005 MAD1-like 1 protein MAD1L1 0.005 MAD1-like 1 protein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.