Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C4orf18 Sequence: fasta or formatted (519aa) NCBI GI: 190358493
Description:

hypothetical protein LOC51313 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {527aa} hypothetical protein LOC51313 isoform 1
alt mRNA {519aa} hypothetical protein LOC51313 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         41           2
 C cysteine            2.5         13           2
 D aspartate           4.6         24           2
 E glutamate           4.6         24           1
 F phenylalanine       3.1         16           2
 G glycine             7.7         40           2
 H histidine           2.7         14           3
 I isoleucine          5.0         26           2
 K lysine              5.8         30           2
 L leucine            11.0         57           3
 M methionine          1.0          5           1
 N asparagine          3.5         18           1
 P proline             7.1         37           2
 Q glutamine           5.0         26           2
 R arginine            8.5         44           2
 S serine              8.3         43           2
 T threonine           2.9         15           1
 V valine              5.6         29           2
 W tryptophan          1.7          9           1
 Y tyrosine            1.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC51313 isoform 2 
C4orf18               1.000   hypothetical protein LOC51313 isoform 2 
C4orf18               0.936   hypothetical protein LOC51313 isoform 1 
LOC729085             0.212   hypothetical protein LOC729085 
RP1L1                 0.010   retinitis pigmentosa 1-like 1 
LOC100292383          0.009   PREDICTED: hypothetical protein 
PABPC4L               0.009   poly(A) binding protein, cytoplasmic 4-like 
MYLK3                 0.008   myosin light chain kinase 3 
TP53BP2               0.008   tumor protein p53 binding protein, 2 isoform 1 [Hom...
TP53BP2               0.008   tumor protein p53 binding protein, 2 isoform 2 
SHROOM2               0.007   apical protein of Xenopus-like 
LOC730456             0.007   PREDICTED: hypothetical protein 
ZNF828                0.007   zinc finger protein 828 
ZC3H7B                0.007   zinc finger CCCH-type containing 7B 
LOC649201             0.006   PREDICTED: similar to paraneoplastic antigen MA1 [H...
SLC38A10              0.006   solute carrier family 38, member 10 isoform a 
BAHCC1                0.006   BAH domain and coiled-coil containing 1 
OBSCN                 0.005   obscurin, cytoskeletal calmodulin and titin-interac...
LOC100287558          0.005   PREDICTED: hypothetical protein XP_002343325 
MAST3                 0.005   microtubule associated serine/threonine kinase 3 [H...
GATA5                 0.005   GATA binding protein 5 
FAM20A                0.005   family with sequence similarity 20, member A 
MARCKS                0.005   myristoylated alanine-rich protein kinase C substra...
SIK1                  0.005   SNF1-like kinase 
LOC100293129          0.005   PREDICTED: hypothetical protein 
LOC100286949          0.005   PREDICTED: hypothetical protein XP_002342730 
C2orf55               0.005   hypothetical protein LOC343990 
FJX1                  0.005   four jointed box 1 
GLYCTK                0.004   glycerate kinase isoform 2 
PATZ1                 0.004   POZ (BTB) and AT hook containing zinc finger 1 long ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press