Guide to the Human Genome
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Name: LOC100286949 Sequence: fasta or formatted (235aa) NCBI GI: 239743055
Description:

PREDICTED: hypothetical protein XP_002342730

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         23           2
 C cysteine            3.8          9           1
 D aspartate           1.7          4           1
 E glutamate           4.7         11           1
 F phenylalanine       1.7          4           1
 G glycine            11.9         28           2
 H histidine           5.1         12           2
 I isoleucine          0.9          2           1
 K lysine              3.0          7           1
 L leucine            11.9         28           2
 M methionine          0.4          1           1
 N asparagine          1.7          4           1
 P proline             9.8         23           2
 Q glutamine           3.8          9           1
 R arginine            8.1         19           2
 S serine             11.1         26           4
 T threonine           3.8          9           1
 V valine              4.3         10           2
 W tryptophan          1.7          4           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342730 
PLEKHN1               0.021   pleckstrin homology domain containing, family N mem...
BAT2D1                0.021   HBxAg transactivated protein 2 
LOC100128398          0.017   PREDICTED: hypothetical protein 
LOC100293820          0.017   PREDICTED: hypothetical protein isoform 2 
LOC100128398          0.017   PREDICTED: hypothetical protein 
LOC100291210          0.017   PREDICTED: hypothetical protein XP_002347722 isofor...
LOC100128398          0.017   PREDICTED: hypothetical protein 
LOC100288525          0.017   PREDICTED: hypothetical protein XP_002344147 isofor...
WDFY3                 0.017   WD repeat and FYVE domain containing 3 isoform 1 [Ho...
PPP1R13L              0.017   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.017   protein phosphatase 1, regulatory subunit 13 like [H...
LOC100292898          0.017   PREDICTED: hypothetical protein 
LOC100290742          0.017   PREDICTED: hypothetical protein XP_002346598 
LOC100289132          0.017   PREDICTED: hypothetical protein XP_002342440 
SIM2                  0.017   single-minded homolog 2 long isoform 
OSBP                  0.017   oxysterol binding protein 
ADAM29                0.015   ADAM metallopeptidase domain 29 preproprotein [Homo...
ADAM29                0.015   ADAM metallopeptidase domain 29 preproprotein [Homo...
ADAM29                0.015   ADAM metallopeptidase domain 29 preproprotein [Homo...
ADAM29                0.015   ADAM metallopeptidase domain 29 preproprotein 
TJP2                  0.015   tight junction protein 2 (zona occludens 2) isoform ...
LPPR4                 0.015   plasticity related gene 1 
ZFPM1                 0.015   zinc finger protein, multitype 1 
POU4F3                0.015   POU class 4 homeobox 3 
C15orf42              0.015   leucine-rich repeat kinase 1 
MAST4                 0.015   microtubule associated serine/threonine kinase fami...
PHF23                 0.015   PHD finger protein 23 
SOX17                 0.015   SRY-box 17 
LOC284801             0.015   PREDICTED: hypothetical protein LOC284801 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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