Guide to the Human Genome
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Name: LOC730456 Sequence: fasta or formatted (175aa) NCBI GI: 113416229
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {174aa} PREDICTED: hypothetical protein
alt prot {197aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            24.0         42           9
 C cysteine            1.1          2           1
 D aspartate           1.1          2           1
 E glutamate           4.0          7           2
 F phenylalanine       1.1          2           1
 G glycine             9.7         17           1
 H histidine           0.6          1           1
 I isoleucine          0.0          0           0
 K lysine              1.1          2           1
 L leucine             6.9         12           2
 M methionine          0.6          1           1
 N asparagine          0.0          0           0
 P proline            13.1         23           2
 Q glutamine           4.6          8           1
 R arginine            9.7         17           2
 S serine             12.6         22           1
 T threonine           2.3          4           1
 V valine              3.4          6           1
 W tryptophan          3.4          6           2
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730456             0.748   PREDICTED: hypothetical protein 
LOC730456             0.641   PREDICTED: hypothetical protein 
FAM48B1               0.070   hypothetical protein LOC100130302 
DDN                   0.067   dendrin 
FOXE1                 0.064   forkhead box E1 
LOC100290274          0.061   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          0.061   PREDICTED: hypothetical protein XP_002342846 
FOXL2                 0.061   forkhead box L2 
FOXD1                 0.058   forkhead box D1 
LOC100289681          0.052   PREDICTED: hypothetical protein XP_002343623 
LOC100292157          0.049   PREDICTED: hypothetical protein 
LOC100289763          0.049   PREDICTED: hypothetical protein XP_002347867 
LOC100290926          0.049   PREDICTED: hypothetical protein XP_002347568 
LOC100288995          0.049   PREDICTED: hypothetical protein XP_002343379 
LOC100292172          0.049   PREDICTED: hypothetical protein 
C17orf96              0.049   hypothetical protein LOC100170841 
LOC100294444          0.046   PREDICTED: similar to family with sequence similari...
FIGNL2                0.046   fidgetin-like 2 
SALL3                 0.046   sal-like 3 
FAM48B2               0.046   family with sequence similarity 48, member B2 [Homo...
MYO15A                0.046   myosin XV 
VASP                  0.046   vasodilator-stimulated phosphoprotein 
LOC100129098          0.046   PREDICTED: hypothetical protein 
BHLHE41               0.046   basic helix-loop-helix domain containing, class B, 3...
TAF4                  0.046   TBP-associated factor 4 
C2orf55               0.043   hypothetical protein LOC343990 
CDC2L5                0.043   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.043   cell division cycle 2-like 5 isoform 2 
DACT3                 0.043   thymus expressed gene 3-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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