Guide to the Human Genome
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Name: LOC100292383 Sequence: fasta or formatted (294aa) NCBI GI: 239754599
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.3         45           4
 C cysteine            3.4         10           1
 D aspartate           1.7          5           1
 E glutamate           4.1         12           2
 F phenylalanine       2.0          6           1
 G glycine            12.2         36           4
 H histidine           2.4          7           1
 I isoleucine          1.0          3           1
 K lysine              6.8         20           2
 L leucine             7.5         22           4
 M methionine          1.7          5           1
 N asparagine          1.0          3           1
 P proline             7.5         22           2
 Q glutamine           5.4         16           1
 R arginine           10.9         32           4
 S serine              8.8         26           2
 T threonine           4.1         12           1
 V valine              2.4          7           2
 W tryptophan          0.7          2           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100292035          0.470   PREDICTED: hypothetical protein XP_002345623 
LOC100287688          0.444   PREDICTED: hypothetical protein XP_002342270 
LOC100293129          0.425   PREDICTED: hypothetical protein 
LOC100291835          0.414   PREDICTED: hypothetical protein XP_002346266 
LOC100292262          0.395   PREDICTED: hypothetical protein 
LOC100292062          0.378   PREDICTED: hypothetical protein XP_002346314 
LOC100290552          0.357   PREDICTED: hypothetical protein XP_002347697 
LOC100290780          0.357   PREDICTED: hypothetical protein XP_002348295 
LOC100292370          0.100   PREDICTED: hypothetical protein 
HIST1H1E              0.052   histone cluster 1, H1e 
HIST1H1B              0.038   histone cluster 1, H1b 
LOC100287499          0.038   PREDICTED: hypothetical protein 
LOC100287499          0.038   PREDICTED: hypothetical protein XP_002343643 
LOC643355             0.038   PREDICTED: hypothetical protein 
MARCKS                0.037   myristoylated alanine-rich protein kinase C substra...
HIST1H1D              0.037   histone cluster 1, H1d 
LOC728650             0.033   PREDICTED: hypothetical protein 
H1FX                  0.031   H1 histone family, member X 
LOC728650             0.030   PREDICTED: hypothetical protein 
NRG1                  0.030   neuregulin 1 isoform GGF2 
FLJ22184              0.030   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.030   PREDICTED: hypothetical protein FLJ22184 
LOC643355             0.028   PREDICTED: hypothetical protein 
LOC643355             0.028   PREDICTED: hypothetical protein 
LOC100127930          0.028   PREDICTED: hypothetical protein 
LOC338758             0.028   PREDICTED: hypothetical protein 
LOC100134702          0.028   PREDICTED: similar to mucin 
ALPK3                 0.028   alpha-kinase 3 
SYDE2                 0.028   synapse defective 1, Rho GTPase, homolog 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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