Guide to the Human Genome
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Name: TM9SF3 Sequence: fasta or formatted (589aa) NCBI GI: 190194386
Description:

transmembrane 9 superfamily member 3

Referenced in:

Lysosomes and Related Organelles

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         37           5
 C cysteine            2.2         13           2
 D aspartate           4.6         27           2
 E glutamate           4.6         27           3
 F phenylalanine       7.6         45           2
 G glycine             7.0         41           2
 H histidine           1.9         11           1
 I isoleucine          8.0         47           2
 K lysine              5.1         30           2
 L leucine             8.3         49           6
 M methionine          4.2         25           2
 N asparagine          2.9         17           1
 P proline             3.7         22           1
 Q glutamine           2.2         13           1
 R arginine            3.9         23           2
 S serine              5.9         35           2
 T threonine           4.6         27           1
 V valine              7.6         45           2
 W tryptophan          2.2         13           1
 Y tyrosine            7.1         42           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane 9 superfamily member 3 
TM9SF1                0.276   transmembrane 9 superfamily member 1 isoform a [Homo...
TM9SF4                0.269   transmembrane 9 superfamily protein member 4 
TM9SF2                0.237   transmembrane 9 superfamily member 2 
TM9SF1                0.182   transmembrane 9 superfamily member 1 isoform b [Homo...
LOC100132679          0.013   PREDICTED: hypothetical protein 
LOC100293574          0.012   PREDICTED: hypothetical protein, partial 
LOC100292028          0.010   PREDICTED: hypothetical protein XP_002346286 
LOC100133547          0.010   PREDICTED: hypothetical protein 
LOC100288460          0.010   PREDICTED: hypothetical protein XP_002342485 
LOC100129642          0.007   PREDICTED: hypothetical protein 
LOC100131203          0.007   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.007   PREDICTED: similar to serine/threonine-protein kina...
F2RL2                 0.007   coagulation factor II (thrombin) receptor-like 2 prec...
LOC100134060          0.006   PREDICTED: hypothetical protein 
LOC100134395          0.006   PREDICTED: hypothetical protein, partial 
LOC100131203          0.006   PREDICTED: hypothetical protein 
LOC100291751          0.006   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100294466          0.006   PREDICTED: hypothetical protein, partial 
LOC100129825          0.006   PREDICTED: hypothetical protein 
LOC100134353          0.005   PREDICTED: hypothetical protein 
LOC100293369          0.005   PREDICTED: hypothetical protein 
LOC100133807          0.005   PREDICTED: similar to serine/threonine-protein kina...
LOC100290974          0.005   PREDICTED: hypothetical protein XP_002346910 
OR10Q1                0.005   olfactory receptor, family 10, subfamily Q, member 1...
LOC100132316          0.005   PREDICTED: hypothetical protein 
OR56A5                0.004   olfactory receptor, family 56, subfamily A, member ...
LPAR6                 0.004   G-protein coupled purinergic receptor P2Y5 
LPAR6                 0.004   G-protein coupled purinergic receptor P2Y5 
LPAR6                 0.004   G-protein coupled purinergic receptor P2Y5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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