Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CLIP3 Sequence: fasta or formatted (547aa) NCBI GI: 18496983
Description:

CAP-GLY domain containing linker protein 3

Referenced in:

Dynein and Dynactin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         48           3
 C cysteine            2.2         12           2
 D aspartate           6.0         33           1
 E glutamate           5.3         29           8
 F phenylalanine       3.7         20           2
 G glycine             8.2         45           2
 H histidine           2.4         13           1
 I isoleucine          2.7         15           1
 K lysine              5.3         29           3
 L leucine             8.6         47           2
 M methionine          2.0         11           1
 N asparagine          2.6         14           1
 P proline             8.8         48           3
 Q glutamine           4.2         23           2
 R arginine            6.4         35           2
 S serine              6.2         34           2
 T threonine           5.9         32           2
 V valine              7.9         43           2
 W tryptophan          1.1          6           1
 Y tyrosine            1.8         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CAP-GLY domain containing linker protein 3 
CLIP4                 0.430   CAP-GLY domain containing linker protein family, mem...
CLIP1                 0.135   restin isoform b 
CLIP1                 0.135   restin isoform a 
CLIP2                 0.133   CAP-GLY domain containing linker protein 2 isoform ...
CLIP2                 0.133   CAP-GLY domain containing linker protein 2 isoform 2...
CEP350                0.059   centrosome-associated protein 350 
KIF13B                0.048   kinesin family member 13B 
DCTN1                 0.047   dynactin 1 isoform 3 
DCTN1                 0.046   dynactin 1 isoform 1 
TBCB                  0.041   cytoskeleton associated protein 1 
TBCE                  0.023   beta-tubulin cofactor E 
TBCE                  0.023   beta-tubulin cofactor E 
EHMT2                 0.022   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.022   euchromatic histone-lysine N-methyltransferase 2 is...
NFKBIZ                0.020   nuclear factor of kappa light polypeptide gene enhan...
NFKBIZ                0.020   nuclear factor of kappa light polypeptide gene enhan...
ANKRD12               0.019   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.019   ankyrin repeat domain 12 isoform 1 
ANKRD11               0.019   ankyrin repeat domain 11 
PPP1R12B              0.018   protein phosphatase 1, regulatory (inhibitor) subuni...
PPP1R12B              0.018   protein phosphatase 1, regulatory (inhibitor) subunit...
ANKRD28               0.018   ankyrin repeat domain 28 
TNKS2                 0.018   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
TNKS                  0.017   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
PPP1R12C              0.017   protein phosphatase 1, regulatory subunit 12C 
CYLD                  0.016   ubiquitin carboxyl-terminal hydrolase CYLD isoform ...
CYLD                  0.016   ubiquitin carboxyl-terminal hydrolase CYLD isoform 1...
CYLD                  0.016   ubiquitin carboxyl-terminal hydrolase CYLD isoform ...
ANK2                  0.016   ankyrin 2 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press