Guide to the Human Genome
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Name: ZNF280A Sequence: fasta or formatted (542aa) NCBI GI: 18158228
Description:

zinc finger protein 280A

Referenced in:

DNA Transposon and Retrovirus-related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3         18           1
 C cysteine            3.5         19           1
 D aspartate           5.2         28           2
 E glutamate           5.0         27           2
 F phenylalanine       3.7         20           1
 G glycine             4.8         26           3
 H histidine           5.0         27           2
 I isoleucine          3.7         20           2
 K lysine              8.3         45           3
 L leucine             6.3         34           2
 M methionine          3.1         17           1
 N asparagine          4.8         26           1
 P proline             6.6         36           2
 Q glutamine           5.0         27           1
 R arginine            4.8         26           3
 S serine             11.4         62           3
 T threonine           6.1         33           2
 V valine              7.2         39           2
 W tryptophan          0.6          3           1
 Y tyrosine            1.7          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 280A 
ZNF280B               0.582   zinc finger protein 280B 
ZNF280D               0.421   suppressor of hairy wing homolog 4 isoform 2 
ZNF280D               0.421   suppressor of hairy wing homolog 4 isoform 1 
ZNF280C               0.333   zinc finger protein 280C 
POGZ                  0.222   pogo transposable element with ZNF domain isoform 1 ...
POGZ                  0.222   pogo transposable element with ZNF domain isoform 2 ...
ZBTB17                0.047   zinc finger and BTB domain containing 17 
PLAG1                 0.041   pleiomorphic adenoma gene 1 isoform a 
PLAG1                 0.041   pleiomorphic adenoma gene 1 isoform a 
ZBTB24                0.040   zinc finger and BTB domain containing 24 
ZNF426                0.040   zinc finger protein 426 
ZNF780B               0.040   zinc finger protein 780B 
ZNF33A                0.040   zinc finger protein 33A isoform b 
ZNF33A                0.040   zinc finger protein 33A isoform a 
ZNF284                0.040   zinc finger protein 284 
ZNF816A               0.039   zinc finger protein 816A 
PLAG1                 0.039   pleiomorphic adenoma gene 1 isoform b 
ZNF544                0.039   zinc finger protein 544 
ZNF778                0.039   zinc finger protein 778 
ZNF840                0.038   PREDICTED: zinc finger protein 840 
ZNF840                0.038   PREDICTED: zinc finger protein 840 
ZNF840                0.038   PREDICTED: zinc finger protein 840 
ZNF860                0.038   zinc finger protein 860 
ZNF829                0.038   zinc finger protein 829 
ZNF774                0.038   zinc finger protein 774 
ZNF582                0.038   zinc finger protein 582 
ZNF33B                0.038   zinc finger protein 33B 
PRDM5                 0.038   PR domain containing 5 
PLAGL2                0.038   pleiomorphic adenoma gene-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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