Guide to the Human Genome
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Name: ZNF280B Sequence: fasta or formatted (543aa) NCBI GI: 23397670
Description:

zinc finger protein 280B

Referenced in:

DNA Transposon and Retrovirus-related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1         17           2
 C cysteine            3.1         17           1
 D aspartate           4.1         22           2
 E glutamate           7.6         41           3
 F phenylalanine       4.4         24           1
 G glycine             2.9         16           2
 H histidine           5.7         31           2
 I isoleucine          4.1         22           3
 K lysine              8.5         46           2
 L leucine             7.0         38           2
 M methionine          1.5          8           1
 N asparagine          5.3         29           2
 P proline             7.2         39           2
 Q glutamine           5.7         31           2
 R arginine            3.3         18           2
 S serine             10.1         55           2
 T threonine           7.6         41           2
 V valine              6.8         37           2
 W tryptophan          0.6          3           1
 Y tyrosine            1.5          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 280B 
ZNF280A               0.581   zinc finger protein 280A 
ZNF280D               0.487   suppressor of hairy wing homolog 4 isoform 2 
ZNF280D               0.487   suppressor of hairy wing homolog 4 isoform 1 
ZNF280C               0.375   zinc finger protein 280C 
POGZ                  0.241   pogo transposable element with ZNF domain isoform 1 ...
POGZ                  0.241   pogo transposable element with ZNF domain isoform 2 ...
ZNF333                0.056   zinc finger protein 333 
ZNF568                0.054   zinc finger protein 568 
ZNF567                0.054   zinc finger protein 567 
LOC729747             0.053   similar to zinc finger protein 709 
ZBTB17                0.052   zinc finger and BTB domain containing 17 
ZNF582                0.052   zinc finger protein 582 
ZNF57                 0.050   zinc finger protein 57 
ZNF544                0.050   zinc finger protein 544 
ZNF774                0.049   zinc finger protein 774 
MYNN                  0.049   myoneurin 
ZNF583                0.048   zinc finger protein 583 
ZNF583                0.048   zinc finger protein 583 
ZNF583                0.048   zinc finger protein 583 
ZNF778                0.048   zinc finger protein 778 
ZNF205                0.048   zinc finger protein 205 
ZNF205                0.048   zinc finger protein 205 
ZNF701                0.047   zinc finger protein 701 
ZNF182                0.047   zinc finger protein 21 isoform 2 
ZNF182                0.047   zinc finger protein 21 isoform 1 
LOC100287429          0.047   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.047   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.047   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF45                 0.047   zinc finger protein 45 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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