Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MICAL3 Sequence: fasta or formatted (966aa) NCBI GI: 170172518
Description:

microtubule associated monoxygenase, calponin and LIM domain containing 3 isoform 3

Referenced in:

LIM Domain Proteins

Other entries for this name:
alt prot [2002aa] microtubule associated monoxygenase, calponin and LIM domain cont...
alt prot [1073aa] microtubule associated monoxygenase, calponin and LIM domain cont...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         77           2
 C cysteine            1.7         16           1
 D aspartate           5.3         51           2
 E glutamate           7.6         73           4
 F phenylalanine       3.9         38           2
 G glycine             6.2         60           2
 H histidine           2.4         23           1
 I isoleucine          4.7         45           2
 K lysine              6.7         65           2
 L leucine             9.9         96           3
 M methionine          2.3         22           1
 N asparagine          4.0         39           2
 P proline             4.5         43           2
 Q glutamine           4.2         41           3
 R arginine            6.4         62           2
 S serine              6.9         67           2
 T threonine           5.5         53           2
 V valine              5.3         51           3
 W tryptophan          1.2         12           1
 Y tyrosine            3.3         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   microtubule associated monoxygenase, calponin and L... 
MICAL3                0.963   microtubule associated monoxygenase, calponin and L...
MICAL3                0.766   microtubule associated monoxygenase, calponin and L...
MICAL2                0.507   microtubule associated monoxygenase, calponin and LIM...
MICAL1                0.365   microtubule associated monoxygenase, calponin and L...
MICAL1                0.189   microtubule associated monoxygenase, calponin and L...
MICALL2               0.064   MICAL-like 2 isoform 1 
MICALL1               0.051   molecule interacting with Rab13 
SPTB                  0.041   spectrin beta isoform a 
SPTB                  0.041   spectrin beta isoform b 
EHBP1L1               0.040   tangerin 
SPTBN2                0.039   spectrin, beta, non-erythrocytic 2 
SPTBN1                0.038   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTBN1                0.038   spectrin, beta, non-erythrocytic 1 isoform 1 
EHBP1                 0.038   EH domain binding protein 1 isoform 3 
EHBP1                 0.038   EH domain binding protein 1 isoform 3 
EHBP1                 0.038   EH domain binding protein 1 isoform 2 
EHBP1                 0.038   EH domain binding protein 1 isoform 1 
ACTN2                 0.038   actinin, alpha 2 
ACTN3                 0.037   actinin, alpha 3 
ACTN1                 0.036   actinin, alpha 1 isoform c 
ACTN1                 0.036   actinin, alpha 1 isoform a 
ACTN1                 0.036   actinin, alpha 1 isoform b 
SPTBN4                0.036   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
ACTN4                 0.035   actinin, alpha 4 
CYTSB                 0.034   spectrin domain with coiled-coils 1 NSP5a3b 
CYTSB                 0.034   spectrin domain with coiled-coils 1 NSP5b3b 
SPTBN5                0.033   spectrin, beta, non-erythrocytic 5 
CYTSA                 0.032   cytospin A 
CYTSA                 0.032   cytospin A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press