Guide to the Human Genome
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Name: MICAL2 Sequence: fasta or formatted (1124aa) NCBI GI: 7662284
Description:

microtubule associated monoxygenase, calponin and LIM domain containing 2

Referenced in:

LIM Domain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         80           3
 C cysteine            2.3         26           2
 D aspartate           4.3         48           2
 E glutamate           7.0         79           3
 F phenylalanine       4.9         55           2
 G glycine             5.9         66           3
 H histidine           3.1         35           1
 I isoleucine          3.3         37           2
 K lysine              6.7         75           2
 L leucine             9.9        111           2
 M methionine          1.7         19           1
 N asparagine          5.1         57           2
 P proline             5.8         65           2
 Q glutamine           4.3         48           3
 R arginine            6.4         72           3
 S serine              7.9         89           3
 T threonine           5.3         60           2
 V valine              5.4         61           4
 W tryptophan          1.2         13           1
 Y tyrosine            2.5         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   microtubule associated monoxygenase, calponin and LIM... 
MICAL3                0.430   microtubule associated monoxygenase, calponin and L...
MICAL3                0.429   microtubule associated monoxygenase, calponin and L...
MICAL3                0.429   microtubule associated monoxygenase, calponin and L...
MICAL1                0.266   microtubule associated monoxygenase, calponin and L...
MICAL1                0.145   microtubule associated monoxygenase, calponin and L...
MICALL2               0.042   MICAL-like 2 isoform 1 
MICALL1               0.041   molecule interacting with Rab13 
ACTN3                 0.035   actinin, alpha 3 
SPTB                  0.034   spectrin beta isoform a 
SPTB                  0.034   spectrin beta isoform b 
ACTN2                 0.034   actinin, alpha 2 
ACTN1                 0.034   actinin, alpha 1 isoform c 
ACTN1                 0.034   actinin, alpha 1 isoform a 
ACTN1                 0.034   actinin, alpha 1 isoform b 
ACTN4                 0.033   actinin, alpha 4 
SPTBN2                0.032   spectrin, beta, non-erythrocytic 2 
EHBP1                 0.030   EH domain binding protein 1 isoform 3 
EHBP1                 0.030   EH domain binding protein 1 isoform 3 
EHBP1                 0.030   EH domain binding protein 1 isoform 2 
EHBP1                 0.030   EH domain binding protein 1 isoform 1 
SPTBN1                0.030   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTBN1                0.030   spectrin, beta, non-erythrocytic 1 isoform 1 
SPTBN4                0.029   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
SPTBN5                0.029   spectrin, beta, non-erythrocytic 5 
CYTSA                 0.028   cytospin A 
CYTSA                 0.028   cytospin A 
CYTSB                 0.027   spectrin domain with coiled-coils 1 NSP5a3b 
CYTSB                 0.027   spectrin domain with coiled-coils 1 NSP5b3b 
EHBP1L1               0.026   tangerin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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