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Search of human proteins with 16933551
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16933551 anthrax toxin receptor 1 isoform 2 precursor [Homo
sapiens]
(368 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16933551 anthrax toxin receptor 1 isoform 2 precursor [Homo s... 741 0.0
gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo s... 734 0.0
gi|16933553 anthrax toxin receptor 1 isoform 3 precursor [Homo s... 639 0.0
gi|224809466 anthrax toxin receptor 2 isoform 2 [Homo sapiens] 372 e-103
gi|50513243 anthrax toxin receptor 2 isoform 1 [Homo sapiens] 372 e-103
gi|62548866 integrin, alpha D precursor [Homo sapiens] 56 6e-08
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 55 1e-07
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 53 5e-07
gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens] 48 1e-05
gi|112734845 collagen, type XX, alpha 1 [Homo sapiens] 41 0.002
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 40 0.004
gi|62548862 matrilin 2 isoform b precursor [Homo sapiens] 39 0.006
gi|62548860 matrilin 2 isoform a precursor [Homo sapiens] 39 0.006
gi|4505111 matrilin 1, cartilage matrix protein [Homo sapiens] 37 0.022
gi|40068485 von Willebrand factor A domain containing 1 isoform ... 36 0.048
gi|13699836 matrilin 4 isoform 3 precursor [Homo sapiens] 35 0.082
gi|13699834 matrilin 4 isoform 2 precursor [Homo sapiens] 35 0.082
gi|13699830 matrilin 4 isoform 1 precursor [Homo sapiens] 35 0.082
gi|52485853 integrin, alpha 11 precursor [Homo sapiens] 35 0.11
gi|56549696 E1A binding protein p400 [Homo sapiens] 33 0.53
gi|150417981 glucocorticoid receptor DNA binding factor 1 [Homo ... 30 3.4
gi|67763814 death-inducing-protein [Homo sapiens] 30 4.5
gi|71773480 aldehyde oxidase 1 [Homo sapiens] 29 5.9
gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens] 29 7.7
gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens] 29 7.7
gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens] 29 7.7
gi|4502209 ADP-ribosylation factor 5 [Homo sapiens] 29 7.7
gi|61563742 hect domain and RLD 6 [Homo sapiens] 29 7.7
>gi|16933551 anthrax toxin receptor 1 isoform 2 precursor [Homo
sapiens]
Length = 368
Score = 741 bits (1914), Expect = 0.0
Identities = 368/368 (100%), Positives = 368/368 (100%)
Query: 1 MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN 60
MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN
Sbjct: 1 MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN 60
Query: 61 EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM 120
EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM
Sbjct: 61 EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM 120
Query: 121 HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV 180
HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV
Sbjct: 121 HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV 180
Query: 181 KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV 240
KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV
Sbjct: 181 KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV 240
Query: 241 VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN 300
VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN
Sbjct: 241 VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN 300
Query: 301 DGLSFISSSVIITTTHCSDGSILAIALLILFLLLALALLWWFWPLCCTVIIKEVPPPPAE 360
DGLSFISSSVIITTTHCSDGSILAIALLILFLLLALALLWWFWPLCCTVIIKEVPPPPAE
Sbjct: 301 DGLSFISSSVIITTTHCSDGSILAIALLILFLLLALALLWWFWPLCCTVIIKEVPPPPAE 360
Query: 361 ESEENKIK 368
ESEENKIK
Sbjct: 361 ESEENKIK 368
>gi|14149904 anthrax toxin receptor 1 isoform 1 precursor [Homo
sapiens]
Length = 564
Score = 734 bits (1894), Expect = 0.0
Identities = 364/364 (100%), Positives = 364/364 (100%)
Query: 1 MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN 60
MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN
Sbjct: 1 MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN 60
Query: 61 EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM 120
EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM
Sbjct: 61 EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM 120
Query: 121 HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV 180
HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV
Sbjct: 121 HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV 180
Query: 181 KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV 240
KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV
Sbjct: 181 KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV 240
Query: 241 VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN 300
VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN
Sbjct: 241 VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN 300
Query: 301 DGLSFISSSVIITTTHCSDGSILAIALLILFLLLALALLWWFWPLCCTVIIKEVPPPPAE 360
DGLSFISSSVIITTTHCSDGSILAIALLILFLLLALALLWWFWPLCCTVIIKEVPPPPAE
Sbjct: 301 DGLSFISSSVIITTTHCSDGSILAIALLILFLLLALALLWWFWPLCCTVIIKEVPPPPAE 360
Query: 361 ESEE 364
ESEE
Sbjct: 361 ESEE 364
>gi|16933553 anthrax toxin receptor 1 isoform 3 precursor [Homo
sapiens]
Length = 333
Score = 639 bits (1649), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN 60
MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN
Sbjct: 1 MATAERRALGIGFQWLSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHHWN 60
Query: 61 EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM 120
EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM
Sbjct: 61 EIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYM 120
Query: 121 HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV 180
HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV
Sbjct: 121 HEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGV 180
Query: 181 KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV 240
KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV
Sbjct: 181 KDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV 240
Query: 241 VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN 300
VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN
Sbjct: 241 VRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMN 300
Query: 301 DGLSFISSSVIITTTHCS 318
DGLSFISSSVIITTTHCS
Sbjct: 301 DGLSFISSSVIITTTHCS 318
>gi|224809466 anthrax toxin receptor 2 isoform 2 [Homo sapiens]
Length = 489
Score = 372 bits (956), Expect = e-103
Identities = 190/366 (51%), Positives = 253/366 (69%), Gaps = 7/366 (1%)
Query: 4 AERRALGIGFQWLSLATLVLICAGQGGR-REDGGPACYGGFDLYFILDKSGSVLHHWNEI 62
AER WL +L+ +G GG R P+C FDLYF+LDKSGSV ++W EI
Sbjct: 3 AERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWIEI 62
Query: 63 YYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHE 122
Y FV+QLA +F+SP++R+SFIVFS++ T ++ LT DR +I +GLE+L++V P G+TY+HE
Sbjct: 63 YNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHE 122
Query: 123 GFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKD 182
G + A+EQI + G +T+S+IIALTDG+L + Y+E+EA SR LGA VYCVGV D
Sbjct: 123 GLKLANEQI--QKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180
Query: 183 FNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVR 242
F + QL RIADSK+ VFPV GFQAL+GII+SIL +SC EIL +PS++C GE FQ+V+
Sbjct: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240
Query: 243 GNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMNDG 302
G GF VLC++ +N++ T + KP SV+ +LCPAPIL + G + VS N G
Sbjct: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300
Query: 303 LSFISSSVIITTTHCSDGSILAIALLILFLLLALALLWWFWPLCCTVIIKEVPPPPA--- 359
S IS S+I+T T CS+G I +L+L LLL + L+WWFWPLCC V+IK+ PPPPA
Sbjct: 301 KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP 360
Query: 360 -EESEE 364
EE EE
Sbjct: 361 KEEEEE 366
>gi|50513243 anthrax toxin receptor 2 isoform 1 [Homo sapiens]
Length = 488
Score = 372 bits (956), Expect = e-103
Identities = 190/366 (51%), Positives = 253/366 (69%), Gaps = 7/366 (1%)
Query: 4 AERRALGIGFQWLSLATLVLICAGQGGR-REDGGPACYGGFDLYFILDKSGSVLHHWNEI 62
AER WL +L+ +G GG R P+C FDLYF+LDKSGSV ++W EI
Sbjct: 3 AERSPARSPGSWLFPGLWLLVLSGPGGLLRAQEQPSCRRAFDLYFVLDKSGSVANNWIEI 62
Query: 63 YYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHE 122
Y FV+QLA +F+SP++R+SFIVFS++ T ++ LT DR +I +GLE+L++V P G+TY+HE
Sbjct: 63 YNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHE 122
Query: 123 GFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKD 182
G + A+EQI + G +T+S+IIALTDG+L + Y+E+EA SR LGA VYCVGV D
Sbjct: 123 GLKLANEQI--QKAGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVLD 180
Query: 183 FNETQLARIADSKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVR 242
F + QL RIADSK+ VFPV GFQAL+GII+SIL +SC EIL +PS++C GE FQ+V+
Sbjct: 181 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQSCTEILELQPSSVCVGEEFQIVLS 240
Query: 243 GNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEVGMKAALQVSMNDG 302
G GF VLC++ +N++ T + KP SV+ +LCPAPIL + G + VS N G
Sbjct: 241 GRGFMLGSRNGSVLCTYTVNETYTTSVKPVSVQLNSMLCPAPILNKAGETLDVSVSFNGG 300
Query: 303 LSFISSSVIITTTHCSDGSILAIALLILFLLLALALLWWFWPLCCTVIIKEVPPPPA--- 359
S IS S+I+T T CS+G I +L+L LLL + L+WWFWPLCC V+IK+ PPPPA
Sbjct: 301 KSVISGSLIVTATECSNGIAAIIVILVLLLLLGIGLMWWFWPLCCKVVIKDPPPPPAPAP 360
Query: 360 -EESEE 364
EE EE
Sbjct: 361 KEEEEE 366
>gi|62548866 integrin, alpha D precursor [Homo sapiens]
Length = 1161
Score = 55.8 bits (133), Expect = 6e-08
Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 24/234 (10%)
Query: 34 DGGPAC-YGGFDLYFILDKSGSV-LHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTT 91
D P C + D+ F++D SGS+ + +N++ FV+ + +F + + +S
Sbjct: 139 DATPECPHQEMDIVFLIDGSGSIDQNDFNQMKGFVQAVMGQFEGTDTLFALMQYSN---- 194
Query: 92 LMKLTEDREQIRQGLEELQKVLP----GGDTYMHEGFERASEQIYYENRQGYRTAS-VII 146
L+K+ Q R + V P G T+ G Q+++ ++A ++I
Sbjct: 195 LLKIHFTFTQFRTSPSQQSLVDPIVQLKGLTFTATGILTVVTQLFHHKNGARKSAKKILI 254
Query: 147 ALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKDFNETQLAR-------IADSKDHVF 199
+TDG+ ++D YS+ ++ G I Y +GV + AR A +DHVF
Sbjct: 255 VITDGQKYKDPLEYSD-VIPQAEKAGIIRYAIGVGHAFQGPTARQELNTISSAPPQDHVF 313
Query: 200 PVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVRGNGFRHARNVD 253
V D F AL I + +K I A E + A SFQ + GF A +D
Sbjct: 314 KV-DNFAALGSIQKQLQEK----IYAVEGTQSRASSSFQHEMSQEGFSTALTMD 362
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 54.7 bits (130), Expect = 1e-07
Identities = 44/185 (23%), Positives = 96/185 (51%), Gaps = 13/185 (7%)
Query: 44 DLYFILDKSGSV-LHHWNEIYYFVEQLAHKF-ISP-QLRMSFIVFSTRGTTLMKLTE--D 98
D+Y ++D SGS ++E+ F+ ++ F I+P ++R+ + ++ ++ + +
Sbjct: 436 DIYLLIDGSGSTQATDFHEMKTFLSEVVGMFNIAPHKVRVGAVQYADSWDLEFEINKYSN 495
Query: 99 REQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQ-GYRTASVIIALTDGELHEDL 157
++ + + +E ++++ GG+T + +Q G + ++ LT+G + +
Sbjct: 496 KQDLGKAIENIRQM--GGNTNTGAALNFTLSLLQKAKKQRGNKVPCHLVVLTNGMSKDSI 553
Query: 158 FFYSEREANRSRDLGAIVYCVGVKDFNETQLARIADSKDHVFPVNDGFQALQGIIHSILK 217
ANR R+ VY +G+K+ N+TQL IA + V+ V+D F AL+ I + +++
Sbjct: 554 L----EPANRLREEHIRVYAIGIKEANQTQLREIAGEEKRVYYVHD-FDALKDIRNQVVQ 608
Query: 218 KSCIE 222
+ C E
Sbjct: 609 EICTE 613
Score = 45.8 bits (107), Expect = 6e-05
Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 18/187 (9%)
Query: 44 DLYFILDKSGSVLH-HWNEIYYFVEQLAHKFI--SPQLRMSFIVFSTRGTTLMKLTE--D 98
D+ F++D SGS+ + +N + F+ L K Q+R + ++ L L +
Sbjct: 809 DVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLFYLDDFGT 868
Query: 99 REQIRQGLEELQKVLPGGDTYMHE--GFERASEQIYYE---NRQGYRTASVIIALTDGEL 153
+ ++ L+ Q + GG TY E GF S+ ++ E +R V+I +TDGE
Sbjct: 869 KLEVISVLQNDQAM--GGSTYTAEALGF---SDHMFTEARGSRLNKGVPQVLIVITDGES 923
Query: 154 HEDLFFYSEREANRSRDLGAIVYCVGVKDFNETQLARIADSKDHVFPVNDGFQALQGIIH 213
H+ + +A RD G +V VG+ N +L +A S D F V + F L+GI
Sbjct: 924 HDADKLNATAKA--LRDKGILVLAVGIDGANPVELLAMAGSSDKYFFV-ETFGGLKGIFS 980
Query: 214 SILKKSC 220
+ C
Sbjct: 981 DVTASVC 987
Score = 40.4 bits (93), Expect = 0.003
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 16/184 (8%)
Query: 44 DLYFILDKSGSV-LHHWNEIYYFVEQLAHKF-ISP-QLRMSFIVFSTRGTTLMKLTEDRE 100
D+ F++D SGS+ +++++ F++ L K I P ++++ + FS +L
Sbjct: 622 DIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRVQIGVVQFSDINKEEFQLNRFMS 681
Query: 101 Q--IRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYRT--ASVIIALTDGELHED 156
Q I ++++ + G T S+ Y+ +G R +I +TDGE +
Sbjct: 682 QSDISNAIDQMAHI--GQTTLTGSALSFVSQ--YFSPTKGARPNIRKFLILITDGEAQDI 737
Query: 157 LFFYSEREANRSRDLGAIVYCVGVKDFNETQLARIADSKDHVFPVNDGFQALQGIIHSIL 216
+ + A R G I+Y VGV N TQL I+ + VF V + F LQ I ++
Sbjct: 738 V----KEPAVVLRQEGVIIYSVGVFGSNVTQLEEISGRPEMVFYV-ENFDILQRIEDDLV 792
Query: 217 KKSC 220
C
Sbjct: 793 FGIC 796
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 52.8 bits (125), Expect = 5e-07
Identities = 66/263 (25%), Positives = 115/263 (43%), Gaps = 29/263 (11%)
Query: 18 LATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSV-LHHWNEIYYFVEQLAHKF-IS 75
L ++L+ +G GG + +DL F+LD S SV + ++ +V L F +
Sbjct: 12 LLWMLLLWSGGGGCQAQRAGCKSVHYDLVFLLDTSSSVGKEDFEKVRQWVANLVDTFEVG 71
Query: 76 P-QLRMSFIVFSTRGTTLMK--LTEDREQIRQGLEELQKVLPGGDTYMHEGFERASEQIY 132
P + R+ + +S R TT + L +E+++ L GG+T + + + +
Sbjct: 72 PDRTRVGVVRYSDRPTTAFELGLFGSQEEVKAAARRL--AYHGGNTNTGDALRYITARSF 129
Query: 133 YENRQG----YRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKDFNETQL 188
+ G V I LTDG +DL + A+R+ G ++ VGV + + +L
Sbjct: 130 SPHAGGRPRDRAYKQVAILLTDGR-SQDLVLDAAAAAHRA---GIRIFAVGVGEALKEEL 185
Query: 189 ARIAD--SKDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVRGNGF 246
IA HVF V+D F A+ I + ++ C +L PS V V G+ F
Sbjct: 186 EEIASEPKSAHVFHVSD-FNAIDKIRGKLRRRLCENVLC--PS---------VRVEGDRF 233
Query: 247 RHARNVDRVLCSFKINDSVTLNE 269
+H + + F + D ++ E
Sbjct: 234 KHTNGGTKEITGFDLMDLFSVKE 256
>gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]
Length = 2526
Score = 48.1 bits (113), Expect = 1e-05
Identities = 53/229 (23%), Positives = 99/229 (43%), Gaps = 17/229 (7%)
Query: 44 DLYFILDKSGSVLHHWNE-IYYFVEQLAHKFISPQLRMSF--IVFSTRGTTLMKLT--ED 98
D+ F+LD SGS+ + + + L K + R+ F + +S + L L +
Sbjct: 814 DVVFVLDHSGSIKKQYQDHMINLTIHLVKKADVGRDRVQFGALKYSDQPNILFYLNTYSN 873
Query: 99 REQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYE--NRQGYRTASVIIALTDGELHED 156
R I + L + + GG+TY + + A+ E +R ++I +TDGE H+
Sbjct: 874 RSAIIENLRKRRDT--GGNTYTAKALKHANALFTEEHGSRIKQNVKQMLIVITDGESHD- 930
Query: 157 LFFYSEREANRSRDLGAIVYCVGVKDFNETQLARIADSKDHVFPVNDGFQALQGIIHSIL 216
A R+ G ++ VGV N+ +L +A +K++ V D F L+ + +
Sbjct: 931 -HDQLNDTALELRNKGITIFAVGVGKANQKELEGMAGNKNNTIYV-DNFDKLKDVFTLVQ 988
Query: 217 KKSCIEILAAEPSTICAGESFQVVVRGNGFRHARNVDRVLCSFKINDSV 265
++ C E +C + V+ +G N D V + ++D +
Sbjct: 989 ERMC-----TEAPEVCHLQEADVIFLCDGSDRVSNSDFVTMTTFLSDLI 1032
>gi|112734845 collagen, type XX, alpha 1 [Homo sapiens]
Length = 1284
Score = 40.8 bits (94), Expect = 0.002
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 44 DLYFILDKSGSVLH-HWNEIYYFVEQLAHKF-ISP-QLRMSFIVFSTRGTTLMKLTE--D 98
D+ F++D S S+ H H+ ++ F+ + F I P ++++ +S T L
Sbjct: 179 DMVFLVDGSWSIGHSHFQQVKDFLASVIAPFEIGPDKVQVGLTQYSGDAQTEWDLNSLST 238
Query: 99 REQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYR--TASVIIALTDGELHED 156
+EQ+ + L+ GG+T+ Q + G R A V+I +TDG+ +D
Sbjct: 239 KEQVLAAVRRLR--YKGGNTFTGLALTHVLGQ-NLQPAAGLRPEAAKVVILVTDGKSQDD 295
Query: 157 LFFYSEREANRSRDLGAIVYCVGVKDFNETQLARIA 192
+ A +DLG V+ VGVK+ +E +L +A
Sbjct: 296 V----HTAARVLKDLGVNVFAVGVKNADEAELRLLA 327
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 39.7 bits (91), Expect = 0.004
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 18/187 (9%)
Query: 44 DLYFILDKSGSV-LHHWNEIYYFVEQLAHKFISPQ----LRMSFIVFSTRGTT---LMKL 95
D+ F+LD S S+ ++ E+ F+E L F +R + + +S T L L
Sbjct: 38 DIVFLLDGSSSIGRSNFREVRSFLEGLVLPFSGAASAQGVRFATVQYSDDPRTEFGLDAL 97
Query: 96 TEDREQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHE 155
+ IR + EL GG+T ++ ++ V I +TDG+ +
Sbjct: 98 GSGGDVIR-AIRELS--YKGGNTRTGAAILHVADHVFLPQLARPGVPKVCILITDGK-SQ 153
Query: 156 DLFFYSEREANRSRDLGAIVYCVGVKDFNETQLARIAD--SKDHVFPVNDGFQALQGIIH 213
DL + A R + G ++ VG+K+ + +L R+A + D F VND F L+ ++
Sbjct: 154 DLV---DTAAQRLKGQGVKLFAVGIKNADPEELKRVASQPTSDFFFFVND-FSILRTLLP 209
Query: 214 SILKKSC 220
+ ++ C
Sbjct: 210 LVSRRVC 216
>gi|62548862 matrilin 2 isoform b precursor [Homo sapiens]
Length = 937
Score = 39.3 bits (90), Expect = 0.006
Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 20/202 (9%)
Query: 44 DLYFILDKSGSV-LHHWNEIYYF-VEQLAHKFISPQL-RMSFIVFST--RGTTLMKLTED 98
DL FI+D S SV H + ++ F V+ L I P + R+ + + + + +K +
Sbjct: 57 DLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKR 116
Query: 99 REQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYR-----TASVIIALTDGEL 153
+ ++ + ++ ++ + G T + + + I + +G R VI+ +TDG
Sbjct: 117 KSEVERAVKRMRHLSTGTMTGLAIQY---ALNIAFSEAEGARPLRENVPRVIMIVTDGRP 173
Query: 154 HEDLFFYSEREANRSRDLGAIVYCVGV--KDFNETQLARIADSKDHVFPVNDGFQALQGI 211
+ + A ++RD G +++ +GV DFN + +DHVF V + F ++ +
Sbjct: 174 QDSV----AEVAAKARDTGILIFAIGVGQVDFNTLKSIGSEPHEDHVFLVAN-FSQIETL 228
Query: 212 IHSILKKSCIEILAAEPSTICA 233
KK C + + CA
Sbjct: 229 TSVFQKKLCTAHMCSTLEHNCA 250
>gi|62548860 matrilin 2 isoform a precursor [Homo sapiens]
Length = 956
Score = 39.3 bits (90), Expect = 0.006
Identities = 46/202 (22%), Positives = 91/202 (45%), Gaps = 20/202 (9%)
Query: 44 DLYFILDKSGSV-LHHWNEIYYF-VEQLAHKFISPQL-RMSFIVFST--RGTTLMKLTED 98
DL FI+D S SV H + ++ F V+ L I P + R+ + + + + +K +
Sbjct: 57 DLVFIIDSSRSVNTHDYAKVKEFIVDILQFLDIGPDVTRVGLLQYGSTVKNEFSLKTFKR 116
Query: 99 REQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYR-----TASVIIALTDGEL 153
+ ++ + ++ ++ + G T + + + I + +G R VI+ +TDG
Sbjct: 117 KSEVERAVKRMRHLSTGTMTGLAIQY---ALNIAFSEAEGARPLRENVPRVIMIVTDGRP 173
Query: 154 HEDLFFYSEREANRSRDLGAIVYCVGV--KDFNETQLARIADSKDHVFPVNDGFQALQGI 211
+ + A ++RD G +++ +GV DFN + +DHVF V + F ++ +
Sbjct: 174 QDSV----AEVAAKARDTGILIFAIGVGQVDFNTLKSIGSEPHEDHVFLVAN-FSQIETL 228
Query: 212 IHSILKKSCIEILAAEPSTICA 233
KK C + + CA
Sbjct: 229 TSVFQKKLCTAHMCSTLEHNCA 250
>gi|4505111 matrilin 1, cartilage matrix protein [Homo sapiens]
Length = 496
Score = 37.4 bits (85), Expect = 0.022
Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 45/237 (18%)
Query: 24 ICAGQGGRREDGGPACYGGFDLYFILDKSGSVL-HHWNEIYYFVEQLAHKF-ISPQLRMS 81
+C+G GG DL F++D S SV ++ + F+ Q+ +S +L
Sbjct: 264 VCSGGGGS---------SATDLVFLIDGSKSVRPENFELVKKFISQIVDTLDVSDKLAQV 314
Query: 82 FIV---FSTRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHEGFERASEQIY-----Y 133
+V S R + ++ I+ + + +YM +G + Y +
Sbjct: 315 GLVQYSSSVRQEFPLGRFHTKKDIKAAVRNM--------SYMEKGTMTGAALKYLIDNSF 366
Query: 134 ENRQGYRTAS--VIIALTDGELHEDLFFYSEREANRSRDLGAIVYCVGVKDFNETQLARI 191
G R + V I TDG + Y A +++DLG ++ VGV + E +L I
Sbjct: 367 TVSSGARPGAQKVGIVFTDGRSQD----YINDAAKKAKDLGFKMFAVGVGNAVEDELREI 422
Query: 192 ADS--KDHVFPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGES---FQVVVRG 243
A +H F D F+ + I + KK C+E +P CA ES FQ V G
Sbjct: 423 ASEPVAEHYFYTAD-FKTINQIGKKLQKKICVE---EDP---CACESLVKFQAKVEG 472
>gi|40068485 von Willebrand factor A domain containing 1 isoform 1
[Homo sapiens]
Length = 445
Score = 36.2 bits (82), Expect = 0.048
Identities = 65/249 (26%), Positives = 102/249 (40%), Gaps = 39/249 (15%)
Query: 16 LSLATLVLICAGQGGRREDGGPACYGGFDLYFILDKSGSVLHH-WNEIYYFVEQLAHKFI 74
L LA + + + G E G PA DL F+LD S SV H+ ++ + FV QL
Sbjct: 7 LGLALSLRLALARSGA-ERGPPASAPRGDLMFLLDSSASVSHYEFSRVREFVGQLVAPLP 65
Query: 75 --SPQLRMSFIVFSTRGTTLMKLTED------REQIRQGLEELQKVLPGGDTYMHEGFER 126
+ LR S + +R T + ++ +R + + GDT+
Sbjct: 66 LGTGALRASLVHVGSRPYTEFPFGQHSSGEAAQDAVRASAQRM------GDTHTGLALVY 119
Query: 127 ASEQIYYENRQGYR--TASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCV--GVKD 182
A EQ++ E G R V++ +TDG + + +DLG V+ V G +
Sbjct: 120 AKEQLFAE-ASGARPGVPKVLVWVTDGGSSDPV----GPPMQELKDLGVTVFIVSTGRGN 174
Query: 183 FNETQLARIADSKDHV--FPVNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVV 240
F E A A ++ H+ V+D +Q + SIL A P + A E
Sbjct: 175 FLELSAAASAPAEKHLHFVDVDDLHIIVQELRGSILD-------AMRPQQLHATE----- 222
Query: 241 VRGNGFRHA 249
+ +GFR A
Sbjct: 223 ITSSGFRLA 231
>gi|13699836 matrilin 4 isoform 3 precursor [Homo sapiens]
Length = 499
Score = 35.4 bits (80), Expect = 0.082
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 15/194 (7%)
Query: 10 GIGFQWLSLATLVLICAGQGGRREDGGPACY----GGFDLYFILDKSGSVL-HHWNEIYY 64
G FQ +S +G + + G +C G DL ++D S SV ++ +
Sbjct: 225 GCEFQCVSEGLSYRCLCPEGRQLQADGKSCNRCREGHVDLVLLVDGSKSVRPQNFELVKR 284
Query: 65 FVEQLAHKF-ISPQ-LRMSFIVFSTRGTTLMKLTE--DREQIRQGLEELQKVLPGGDT-- 118
FV Q+ +SP+ R+ + FS+R T L +++Q + ++ + G T
Sbjct: 285 FVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMERGTMTGL 344
Query: 119 YMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCV 178
+ E + + + V + TDG +D+ + A R+++ G ++Y V
Sbjct: 345 ALRHMVEHSFSEAQGARPRALNVPRVGLVFTDGRSQDDISVW----AARAKEEGIVMYAV 400
Query: 179 GVKDFNETQLARIA 192
GV E +L IA
Sbjct: 401 GVGKAVEAELREIA 414
>gi|13699834 matrilin 4 isoform 2 precursor [Homo sapiens]
Length = 540
Score = 35.4 bits (80), Expect = 0.082
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 15/194 (7%)
Query: 10 GIGFQWLSLATLVLICAGQGGRREDGGPACY----GGFDLYFILDKSGSVL-HHWNEIYY 64
G FQ +S +G + + G +C G DL ++D S SV ++ +
Sbjct: 266 GCEFQCVSEGLSYRCLCPEGRQLQADGKSCNRCREGHVDLVLLVDGSKSVRPQNFELVKR 325
Query: 65 FVEQLAHKF-ISPQ-LRMSFIVFSTRGTTLMKLTE--DREQIRQGLEELQKVLPGGDT-- 118
FV Q+ +SP+ R+ + FS+R T L +++Q + ++ + G T
Sbjct: 326 FVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMERGTMTGL 385
Query: 119 YMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCV 178
+ E + + + V + TDG +D+ + A R+++ G ++Y V
Sbjct: 386 ALRHMVEHSFSEAQGARPRALNVPRVGLVFTDGRSQDDISVW----AARAKEEGIVMYAV 441
Query: 179 GVKDFNETQLARIA 192
GV E +L IA
Sbjct: 442 GVGKAVEAELREIA 455
>gi|13699830 matrilin 4 isoform 1 precursor [Homo sapiens]
Length = 581
Score = 35.4 bits (80), Expect = 0.082
Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 15/194 (7%)
Query: 10 GIGFQWLSLATLVLICAGQGGRREDGGPACY----GGFDLYFILDKSGSVL-HHWNEIYY 64
G FQ +S +G + + G +C G DL ++D S SV ++ +
Sbjct: 307 GCEFQCVSEGLSYRCLCPEGRQLQADGKSCNRCREGHVDLVLLVDGSKSVRPQNFELVKR 366
Query: 65 FVEQLAHKF-ISPQ-LRMSFIVFSTRGTTLMKLTE--DREQIRQGLEELQKVLPGGDT-- 118
FV Q+ +SP+ R+ + FS+R T L +++Q + ++ + G T
Sbjct: 367 FVNQIVDFLDVSPEGTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAVLAVEYMERGTMTGL 426
Query: 119 YMHEGFERASEQIYYENRQGYRTASVIIALTDGELHEDLFFYSEREANRSRDLGAIVYCV 178
+ E + + + V + TDG +D+ + A R+++ G ++Y V
Sbjct: 427 ALRHMVEHSFSEAQGARPRALNVPRVGLVFTDGRSQDDISVW----AARAKEEGIVMYAV 482
Query: 179 GVKDFNETQLARIA 192
GV E +L IA
Sbjct: 483 GVGKAVEAELREIA 496
>gi|52485853 integrin, alpha 11 precursor [Homo sapiens]
Length = 1188
Score = 35.0 bits (79), Expect = 0.11
Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 38/203 (18%)
Query: 39 CYGGFDLYFILDKSGSVLHHWNEIYYFVEQLAHKF-ISP-QLRMSFIVFSTRGTTLMKLT 96
C D+ +LD S S+ + W E+ +F+ + KF I P Q+++ + + L
Sbjct: 159 CQTYMDIVIVLDGSNSI-YPWVEVQHFLINILKKFYIGPGQIQVGVVQYGEDVVHEFHLN 217
Query: 97 EDREQIRQGLEELQKVLPGGDTYMHEGFE---RASEQIYYENRQGYRTASVIIALTDGEL 153
+ R ++ +E + G T F SE R+G + V+I +TDGE
Sbjct: 218 DYRS-VKDVVEAASHIEQRGGTETRTAFGIEFARSEAFQKGGRKGAK--KVMIVITDGES 274
Query: 154 HED----------------------LFFYSEREANRSRDLGAIVYCVGVKD----FNETQ 187
H+ L +Y+ R N L I Y D FN T
Sbjct: 275 HDSPDLEKVIQQSERDNVTRYAVAVLGYYNRRGINPETFLNEIKYIASDPDDKHFFNVTD 334
Query: 188 LARIADSKDHVFPVNDGFQALQG 210
A + KD V + D +L+G
Sbjct: 335 EAAL---KDIVDALGDRIFSLEG 354
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 32.7 bits (73), Expect = 0.53
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 93 MKLTEDREQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGE 152
+KL + E+ R+ LQKV G +GF+ E G R I+LTD E
Sbjct: 853 IKLRVELEEKRKKALNLQKVSRRGKELRPKGFDALQESSLDSGMSG-RKRKASISLTDDE 911
Query: 153 LHEDLFFYSEREANRSRDLGAIVYCVGVKDFNETQLARIADSKDHVFPVNDGFQALQG 210
+ ++ E EAN GV D ++T+L+ +A K+ P+ D + +G
Sbjct: 912 VDDEEETIEEEEANE-----------GVVD-HQTELSNLA--KEAELPLLDLMKLYEG 955
>gi|150417981 glucocorticoid receptor DNA binding factor 1 [Homo
sapiens]
Length = 1499
Score = 30.0 bits (66), Expect = 3.4
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 256 LCSFKINDSVTLNEKPFSV--EDTYLLCPAPILKEVGMKAALQVSMNDGLSFISSS 309
LC+ + DS E +S+ EDT L P L + K ++++ NDGLSFI S+
Sbjct: 977 LCNSNLQDSEEDIEPSYSLFREDTSL----PSLSKDHSKLSMELEGNDGLSFIMSN 1028
>gi|67763814 death-inducing-protein [Homo sapiens]
Length = 578
Score = 29.6 bits (65), Expect = 4.5
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 161 SEREANRSRDL---GAIVYCVGVKDFNETQLARIADSKDHV 198
S R++ RD G ++ GV+DFN T+ R+ + K H+
Sbjct: 44 SPRDSEELRDPAGPGTLIMATGVQDFNRTEFDRLNEIKGHL 84
>gi|71773480 aldehyde oxidase 1 [Homo sapiens]
Length = 1338
Score = 29.3 bits (64), Expect = 5.9
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 201 VNDGFQALQGIIHSILKKSCIEILAAEPSTICAGESFQVVVRGNGFRHARNVDRVLCSFK 260
VN G + G I+++ CI P+TICA S Q ++ G + + C
Sbjct: 441 VNSGMRVFFGEGDGIIRELCISYGGVGPATICAKNSCQKLI---GRHWNEQMLDIACRLI 497
Query: 261 INDSVTLNEKP 271
+N+ L P
Sbjct: 498 LNEVSLLGSAP 508
>gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens]
Length = 1805
Score = 28.9 bits (63), Expect = 7.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 301 DGLSFISSSVII-TTTHCSDGS---ILAIALLILFLLLALALLWWFWPLCCTVIIKEVP 355
DG +S+V++ C GS ++ + LL+L LL L LL W + CC + +P
Sbjct: 689 DGAPGPNSTVLVHKKKDCPPGSFWWLIPLLLLLLPLLALLLLLCWKYCACCKACLALLP 747
>gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens]
Length = 1822
Score = 28.9 bits (63), Expect = 7.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 301 DGLSFISSSVII-TTTHCSDGS---ILAIALLILFLLLALALLWWFWPLCCTVIIKEVP 355
DG +S+V++ C GS ++ + LL+L LL L LL W + CC + +P
Sbjct: 689 DGAPGPNSTVLVHKKKDCPPGSFWWLIPLLLLLLPLLALLLLLCWKYCACCKACLALLP 747
>gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens]
Length = 1752
Score = 28.9 bits (63), Expect = 7.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 301 DGLSFISSSVII-TTTHCSDGS---ILAIALLILFLLLALALLWWFWPLCCTVIIKEVP 355
DG +S+V++ C GS ++ + LL+L LL L LL W + CC + +P
Sbjct: 689 DGAPGPNSTVLVHKKKDCPPGSFWWLIPLLLLLLPLLALLLLLCWKYCACCKACLALLP 747
>gi|4502209 ADP-ribosylation factor 5 [Homo sapiens]
Length = 180
Score = 28.9 bits (63), Expect = 7.7
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 86 STRGTTLMKLTEDREQIRQGLEELQKVLPGGDTYMHEGFERASEQIYYENRQGYRTASVI 145
+T+G + + DRE++++ +ELQK+L E R + + + N+Q A +
Sbjct: 84 NTQGLIFVVDSNDRERVQESADELQKML-------QEDELRDAVLLVFANKQDMPNAMPV 136
Query: 146 IALTD 150
LTD
Sbjct: 137 SELTD 141
>gi|61563742 hect domain and RLD 6 [Homo sapiens]
Length = 1022
Score = 28.9 bits (63), Expect = 7.7
Identities = 18/78 (23%), Positives = 36/78 (46%)
Query: 230 TICAGESFQVVVRGNGFRHARNVDRVLCSFKINDSVTLNEKPFSVEDTYLLCPAPILKEV 289
T+ + F + G HAR + ++ F+ ++ + + P S+ +L
Sbjct: 939 TLDEKKKFLFFLTGRDRLHARGIQKMEIVFRCPETFSERDHPTSITCHNILSLPKYSTME 998
Query: 290 GMKAALQVSMNDGLSFIS 307
M+ ALQV++N+ F+S
Sbjct: 999 RMEEALQVAINNNRGFVS 1016
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,013,944
Number of Sequences: 37866
Number of extensions: 589397
Number of successful extensions: 1557
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1538
Number of HSP's gapped (non-prelim): 36
length of query: 368
length of database: 18,247,518
effective HSP length: 104
effective length of query: 264
effective length of database: 14,309,454
effective search space: 3777695856
effective search space used: 3777695856
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.