Guide to the Human Genome
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Name: LOC650024 Sequence: fasta or formatted (224aa) NCBI GI: 169217256
Description:

PREDICTED: similar to chromosome X open reading frame 48

Not currently referenced in the text

Other entries for this name:
alt mRNA {224aa} PREDICTED: similar to chromosome X open reading frame 48
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1          7           1
 C cysteine            3.1          7           1
 D aspartate           7.1         16           2
 E glutamate           4.5         10           2
 F phenylalanine       5.4         12           2
 G glycine             8.5         19           2
 H histidine           2.7          6           1
 I isoleucine          9.8         22           2
 K lysine              5.4         12           1
 L leucine             4.0          9           1
 M methionine          1.3          3           1
 N asparagine          3.1          7           1
 P proline             4.0          9           1
 Q glutamine           2.2          5           1
 R arginine            4.0          9           2
 S serine              9.8         22           3
 T threonine           4.0          9           1
 V valine             12.5         28           3
 W tryptophan          0.9          2           1
 Y tyrosine            4.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to chromosome X open reading fra... 
LOC650024             1.000   PREDICTED: similar to chromosome X open reading fra...
CXorf48               0.866   hypothetical protein LOC54967 isoform 1 
CXorf48               0.765   hypothetical protein LOC54967 isoform 2 
LOC728470             0.714   PREDICTED: similar to hCG1736317 
LOC728470             0.714   PREDICTED: similar to hCG1736317 isoform 2 
LOC728470             0.714   PREDICTED: similar to hCG1736317 isoform 1 
MOV10L1               0.396   MOV10-like 1 
KIAA1967              0.014   p30 DBC protein 
KIAA1967              0.014   p30 DBC protein 
LOC100294468          0.012   PREDICTED: similar to HLA class II histocompatibili...
ENPEP                 0.012   glutamyl aminopeptidase 
DBC1                  0.007   deleted in bladder cancer 1 
LOC100294189          0.007   PREDICTED: similar to HLA class II histocompatibili...
LOC100294189          0.007   PREDICTED: similar to HLA class II histocompatibili...
LOC100294161          0.007   PREDICTED: similar to HLA class II histocompatibili...
LOC100294161          0.007   PREDICTED: similar to HLA class II histocompatibili...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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