Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169212142
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169212142 PREDICTED: similar to NCOR [Homo sapiens]
(123 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169212142 PREDICTED: similar to NCOR [Homo sapiens] 252 6e-68
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 118 1e-27
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 58 2e-09
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 58 2e-09
gi|50053795 eukaryotic translation initiation factor 4B [Homo sa... 32 0.12
gi|239750460 PREDICTED: hypothetical protein [Homo sapiens] 32 0.16
gi|24308303 SH3-binding domain protein 5-like [Homo sapiens] 32 0.16
gi|253970506 Ewing sarcoma breakpoint region 1 isoform 5 [Homo s... 29 0.79
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 29 0.79
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 29 0.79
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 29 0.79
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 29 0.79
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho... 29 0.79
gi|169190542 PREDICTED: hypothetical protein [Homo sapiens] 29 1.0
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens] 29 1.0
gi|59814411 hypothetical protein LOC253725 [Homo sapiens] 29 1.0
gi|40807471 transcription termination factor, RNA polymerase II ... 29 1.0
gi|154090959 hypothetical protein LOC55747 [Homo sapiens] 29 1.0
gi|38569491 serine/threonine-protein kinase QSK [Homo sapiens] 28 1.3
gi|193082982 zinc finger protein 837 isoform 1 [Homo sapiens] 28 1.3
gi|193082980 zinc finger protein 837 isoform 2 [Homo sapiens] 28 1.3
gi|116089276 tetratricopeptide repeat domain 23-like [Homo sapiens] 28 1.3
gi|54124343 hypothetical protein LOC387680 [Homo sapiens] 28 1.3
gi|116517224 coiled-coil domain containing 144B [Homo sapiens] 28 1.3
gi|149363642 coiled-coil domain containing 144A [Homo sapiens] 28 1.3
gi|17986270 dopamine receptor D2 isoform short [Homo sapiens] 28 1.8
gi|4503385 dopamine receptor D2 isoform long [Homo sapiens] 28 1.8
gi|32528268 glutamate receptor, metabotropic 7 isoform b precurs... 28 1.8
gi|4504147 glutamate receptor, metabotropic 7 isoform a precurso... 28 1.8
gi|239754415 PREDICTED: hypothetical protein XP_002345991 [Homo ... 28 1.8
>gi|169212142 PREDICTED: similar to NCOR [Homo sapiens]
Length = 123
Score = 252 bits (643), Expect = 6e-68
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MSSSGYPPNQGAFSTEQSRYPPHSVKYTFPSTRHQQDPTFGGKHEAPSSPISRQPCGDDQ 60
MSSSGYPPNQGAFSTEQSRYPPHSVKYTFPSTRHQQDPTFGGKHEAPSSPISRQPCGDDQ
Sbjct: 1 MSSSGYPPNQGAFSTEQSRYPPHSVKYTFPSTRHQQDPTFGGKHEAPSSPISRQPCGDDQ 60
Query: 61 NASPSKLSKEELIQSMDRINREIAKVEQQILKLKKKQVKVFAYNILRMCVFLPTEDIFEF 120
NASPSKLSKEELIQSMDRINREIAKVEQQILKLKKKQVKVFAYNILRMCVFLPTEDIFEF
Sbjct: 61 NASPSKLSKEELIQSMDRINREIAKVEQQILKLKKKQVKVFAYNILRMCVFLPTEDIFEF 120
Query: 121 SIL 123
SIL
Sbjct: 121 SIL 123
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 118 bits (296), Expect = 1e-27
Identities = 57/63 (90%), Positives = 61/63 (96%)
Query: 35 QQDPTFGGKHEAPSSPISRQPCGDDQNASPSKLSKEELIQSMDRINREIAKVEQQILKLK 94
++DP FGGKHEAPSSPIS QPCGDDQNASPSKLSKEELIQSMDR++REIAKVEQQILKLK
Sbjct: 144 KKDPAFGGKHEAPSSPISGQPCGDDQNASPSKLSKEELIQSMDRVDREIAKVEQQILKLK 203
Query: 95 KKQ 97
KKQ
Sbjct: 204 KKQ 206
Score = 80.5 bits (197), Expect = 3e-16
Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 5/74 (6%)
Query: 1 MSSSGYPPNQGAFSTEQSRYPPHSVKYTFPSTRHQQD---PTFGGKH--EAPSSPISRQP 55
MSSSGYPPNQGAFSTEQSRYPPHSV+YTFP+TRHQQ+ P + H + +S + +Q
Sbjct: 1 MSSSGYPPNQGAFSTEQSRYPPHSVQYTFPNTRHQQEFAVPDYRSSHLEVSQASQLLQQQ 60
Query: 56 CGDDQNASPSKLSK 69
PS LS+
Sbjct: 61 QQQQLRRRPSLLSE 74
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 58.2 bits (139), Expect = 2e-09
Identities = 34/62 (54%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 36 QDPTFGGKHEAPSSPISRQPCGDDQNASPSKLSKEELIQSMDRINREIAKVEQQILKLKK 95
+D + GK E P SP S + P +LSKEELIQ+MDR++REI VEQQI KLKK
Sbjct: 137 KDRSLTGKLE-PVSPPSPPHTDPELELVPPRLSKEELIQNMDRVDREITMVEQQISKLKK 195
Query: 96 KQ 97
KQ
Sbjct: 196 KQ 197
Score = 28.5 bits (62), Expect = 1.3
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 14/127 (11%)
Query: 1 MSSSGYPPNQGAFSTEQSRYPPHSVKYTFPSTR---------HQQDPTFGGKHEAPSS-- 49
MS S P Q +TE RYPPHS+ Y R +Q H +P S
Sbjct: 1 MSGSTQPVAQTWRATEP-RYPPHSLSYPVQIARTHTDVGLLEYQHHSRDYASHLSPGSII 59
Query: 50 -PISRQPCGDDQNASPSKLSKE-ELIQSMDRINREIAKVEQQILKLKKKQVKVFAYNILR 107
P R+P + ++ S+E L E+ K E + ++ K+ ++++ +LR
Sbjct: 60 QPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEFIESKRPRLELLPDPLLR 119
Query: 108 MCVFLPT 114
L T
Sbjct: 120 PSPLLAT 126
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 58.2 bits (139), Expect = 2e-09
Identities = 34/62 (54%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 36 QDPTFGGKHEAPSSPISRQPCGDDQNASPSKLSKEELIQSMDRINREIAKVEQQILKLKK 95
+D + GK E P SP S + P +LSKEELIQ+MDR++REI VEQQI KLKK
Sbjct: 137 KDRSLTGKLE-PVSPPSPPHTDPELELVPPRLSKEELIQNMDRVDREITMVEQQISKLKK 195
Query: 96 KQ 97
KQ
Sbjct: 196 KQ 197
Score = 28.5 bits (62), Expect = 1.3
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 14/127 (11%)
Query: 1 MSSSGYPPNQGAFSTEQSRYPPHSVKYTFPSTR---------HQQDPTFGGKHEAPSS-- 49
MS S P Q +TE RYPPHS+ Y R +Q H +P S
Sbjct: 1 MSGSTQPVAQTWRATEP-RYPPHSLSYPVQIARTHTDVGLLEYQHHSRDYASHLSPGSII 59
Query: 50 -PISRQPCGDDQNASPSKLSKE-ELIQSMDRINREIAKVEQQILKLKKKQVKVFAYNILR 107
P R+P + ++ S+E L E+ K E + ++ K+ ++++ +LR
Sbjct: 60 QPQRRRPSLLSEFQPGNERSQELHLRPESHSYLPELGKSEMEFIESKRPRLELLPDPLLR 119
Query: 108 MCVFLPT 114
L T
Sbjct: 120 PSPLLAT 126
>gi|50053795 eukaryotic translation initiation factor 4B [Homo
sapiens]
Length = 611
Score = 32.0 bits (71), Expect = 0.12
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 7 PPNQGAFSTEQSRYPPHSVKYTFPSTRHQQDPTFGGKHEAPSSPISRQPCGDDQN 61
PP + A+ S P S S QQ PT GG AP+ P P D+N
Sbjct: 478 PPKENAWVKRSSNPPARSQS----SDTEQQSPTSGGGKVAPAQPSEEGPGRKDEN 528
>gi|239750460 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 31.6 bits (70), Expect = 0.16
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 23 HSVKYTFPSTRHQQDPTFGGKHEAPSSPISRQPCGDDQNASPSKLSKEE 71
H + +FP+ +Q+ P H PS+ I R +DQ + P L+K++
Sbjct: 11 HFLARSFPTFLNQRLPKTKASHSKPSTHIKRASLCEDQVSGPQTLTKQK 59
>gi|24308303 SH3-binding domain protein 5-like [Homo sapiens]
Length = 393
Score = 31.6 bits (70), Expect = 0.16
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 45 EAPSSPISRQPCGDDQNASPSKLSKEELIQSMDRINREIAKVEQQILKLKKKQVKV 100
E P SP++ +P G ++S +KLS E + RI E+ + Q ++ + ++++
Sbjct: 26 EVPRSPVAEEPGGGGSSSSEAKLSPREEEELDPRIQEELEHLNQASEEINQVELQL 81
>gi|253970506 Ewing sarcoma breakpoint region 1 isoform 5 [Homo
sapiens]
Length = 354
Score = 29.3 bits (64), Expect = 0.79
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 4 SGYPPNQGAFSTEQSRYPPHSVKYTFPSTRHQQDPTFGGKHEAPSSPISRQPCGDDQNAS 63
+ YPP G++S S+Y S Y S+ Q P+ G + S S G +N S
Sbjct: 238 TSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFS----GPGENRS 293
Query: 64 PS 65
S
Sbjct: 294 MS 295
>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
sapiens]
Length = 600
Score = 29.3 bits (64), Expect = 0.79
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 4 SGYPPNQGAFSTEQSRYPPHSVKYTFPSTRHQQDPTFGGKHEAPSSPISRQPCGDDQNAS 63
+ YPP G++S S+Y S Y S+ Q P+ G + S S G +N S
Sbjct: 182 TSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFS----GPGENRS 237
Query: 64 PS 65
S
Sbjct: 238 MS 239
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 29.3 bits (64), Expect = 0.79
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 4 SGYPPNQGAFSTEQSRYPPHSVKYTFPSTRHQQDPTFGGKHEAPSSPISRQPCGDDQNAS 63
+ YPP G++S S+Y S Y S+ Q P+ G + S S G +N S
Sbjct: 238 TSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFS----GPGENRS 293
Query: 64 PS 65
S
Sbjct: 294 MS 295
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 29.3 bits (64), Expect = 0.79
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 4 SGYPPNQGAFSTEQSRYPPHSVKYTFPSTRHQQDPTFGGKHEAPSSPISRQPCGDDQNAS 63
+ YPP G++S S+Y S Y S+ Q P+ G + S S G +N S
Sbjct: 244 TSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFS----GPGENRS 299
Query: 64 PS 65
S
Sbjct: 300 MS 301
>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
sapiens]
Length = 656
Score = 29.3 bits (64), Expect = 0.79
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 4 SGYPPNQGAFSTEQSRYPPHSVKYTFPSTRHQQDPTFGGKHEAPSSPISRQPCGDDQNAS 63
+ YPP G++S S+Y S Y S+ Q P+ G + S S G +N S
Sbjct: 238 TSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFS----GPGENRS 293
Query: 64 PS 65
S
Sbjct: 294 MS 295
>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
sapiens]
Length = 1484
Score = 29.3 bits (64), Expect = 0.79
Identities = 19/64 (29%), Positives = 25/64 (39%)
Query: 7 PPNQGAFSTEQSRYPPHSVKYTFPSTRHQQDPTFGGKHEAPSSPISRQPCGDDQNASPSK 66
PP S +PPHSV Q P + A SSP++ P P+
Sbjct: 1343 PPLSSGMGFGSSAFPPHSVMLQTGPPYTPQRPASHFQPRAYSSPVAALPPHHPGATQPNG 1402
Query: 67 LSKE 70
LS+E
Sbjct: 1403 LSQE 1406
>gi|169190542 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 28.9 bits (63), Expect = 1.0
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 21/108 (19%)
Query: 24 SVKYTFPSTRHQQDPT---FGGKHEAPSSPISRQPCGDD---QNASPSKLSKEE---LIQ 74
SV+ T P + ++P GGK ++P P + DD Q+A P K L++
Sbjct: 111 SVERTKPKAKIAENPANPPVGGKAKSPMFPALGEASSDDDLFQSAKPKPAKKTNPFPLLE 170
Query: 75 SMDRINREIAKVEQQILKLKKKQVKVFAYNILRMCVFLPTEDIFEFSI 122
D + + K+KK + K + + V L T+DIFE I
Sbjct: 171 DEDDLFTD--------QKVKKNETK----SSSQQDVILTTQDIFEDDI 206
>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
Length = 1780
Score = 28.9 bits (63), Expect = 1.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 65 SKLSKEELIQSMDRINREIAKVEQQILKLKKKQV 98
S + K+ I+ + RI E +K+E QI+ +K K++
Sbjct: 1499 SNVQKDNEIEQLKRIISETSKIETQIMDIKPKRI 1532
>gi|59814411 hypothetical protein LOC253725 [Homo sapiens]
Length = 1318
Score = 28.9 bits (63), Expect = 1.0
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 21/108 (19%)
Query: 24 SVKYTFPSTRHQQDPT---FGGKHEAPSSPISRQPCGDD---QNASPSKLSKEE---LIQ 74
SV+ T P + ++P GGK ++P P + DD Q+A P K L++
Sbjct: 1121 SVERTKPKAKIAENPANPPVGGKAKSPMFPALGEASSDDDLFQSAKPKPAKKTNPFPLLE 1180
Query: 75 SMDRINREIAKVEQQILKLKKKQVKVFAYNILRMCVFLPTEDIFEFSI 122
D + + K+KK + K + + V L T+DIFE I
Sbjct: 1181 DEDDLFTD--------QKVKKNETK----SSSQQDVILTTQDIFEDDI 1216
>gi|40807471 transcription termination factor, RNA polymerase II
[Homo sapiens]
Length = 1162
Score = 28.9 bits (63), Expect = 1.0
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 41 GGKHEAPSSPISRQPCGDDQNASPSKLSKEELIQSMDRINREIAKVEQQILKLKKKQV 98
GG H+ S I Q C ++ PS S+E+ + RE + +++ +L + V
Sbjct: 209 GGTHKRDFSEIKSQQCQGNELTRPSASSQEKSSGKSQDVQRESEPLREKVTQLLPQNV 266
>gi|154090959 hypothetical protein LOC55747 [Homo sapiens]
Length = 1253
Score = 28.9 bits (63), Expect = 1.0
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 15/105 (14%)
Query: 24 SVKYTFPSTRHQQDPT---FGGKHEAPSSPISRQPCGDD---QNASPSKLSKEELIQSMD 77
SV+ T P + ++P GGK ++P P + DD Q+A P K ++
Sbjct: 1056 SVERTKPKAKIAENPANPPVGGKAKSPMFPALGEASSDDDLFQSAKPKPAKKTNTFPLLE 1115
Query: 78 RINREIAKVEQQILKLKKKQVKVFAYNILRMCVFLPTEDIFEFSI 122
+ + +Q K+KK + K + + V L T+DIFE I
Sbjct: 1116 --DEDDLFTDQ---KVKKNETK----SNSQQDVILTTQDIFEDDI 1151
>gi|38569491 serine/threonine-protein kinase QSK [Homo sapiens]
Length = 1263
Score = 28.5 bits (62), Expect = 1.3
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 2 SSSGYPPNQGA-FSTEQS-RYPPHSVKYTFPSTRHQQDPTF 40
S S Y P+ G FS Q+ + PP TFP + HQQ P +
Sbjct: 844 SPSSYSPSTGVGFSPTQALKVPPLDQFPTFPPSAHQQPPHY 884
>gi|193082982 zinc finger protein 837 isoform 1 [Homo sapiens]
Length = 531
Score = 28.5 bits (62), Expect = 1.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 38 PTFGGKHEAPSSPISRQPCGDDQNASPSKLSKEEL 72
P G +H A + P+ R+PCG + +P + E L
Sbjct: 74 PGPGTRHSAGTRPLVREPCGPTSSQNPELVIPEGL 108
>gi|193082980 zinc finger protein 837 isoform 2 [Homo sapiens]
Length = 531
Score = 28.5 bits (62), Expect = 1.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 38 PTFGGKHEAPSSPISRQPCGDDQNASPSKLSKEEL 72
P G +H A + P+ R+PCG + +P + E L
Sbjct: 74 PGPGTRHSAGTRPLVREPCGPTSSQNPELVIPEGL 108
>gi|116089276 tetratricopeptide repeat domain 23-like [Homo sapiens]
Length = 361
Score = 28.5 bits (62), Expect = 1.3
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 56 CGDDQNASPSKLSKEELIQSMDRINREIAKVEQQILKLKKKQVKVFAYNILRMCVFL 112
CG+ + + +K KE+ I M ++A+ ++++ +L K+++ A L CV L
Sbjct: 44 CGESEEETKAK-EKEKAIDCMSHPKEKLAQSQKKVAQLIKEKMNTQANKELIRCVIL 99
>gi|54124343 hypothetical protein LOC387680 [Homo sapiens]
Length = 1341
Score = 28.5 bits (62), Expect = 1.3
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 21/108 (19%)
Query: 24 SVKYTFPSTRHQQDPT---FGGKHEAPSSPISRQPCGDD---QNASPSKLSKEE---LIQ 74
SV+ T P + ++P GGK ++P P + DD Q+A P K L++
Sbjct: 1144 SVERTKPKAKIAENPANPPVGGKAKSPMFPALGEASSDDDLFQSAKPKPAKKTNPFPLLE 1203
Query: 75 SMDRINREIAKVEQQILKLKKKQVKVFAYNILRMCVFLPTEDIFEFSI 122
D + + K+KK + K + + V L T+DIFE I
Sbjct: 1204 DEDDLFTD--------QKVKKNETK----SNSQQDVILTTQDIFEDDI 1239
>gi|116517224 coiled-coil domain containing 144B [Homo sapiens]
Length = 725
Score = 28.5 bits (62), Expect = 1.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 70 EELIQSMDRINREIAKVEQQILKLKKKQVKV 100
EEL Q M + E+ +E++ L LKK+ V++
Sbjct: 493 EELQQDMQKFKNEVNTLEEEFLALKKENVQL 523
>gi|149363642 coiled-coil domain containing 144A [Homo sapiens]
Length = 1427
Score = 28.5 bits (62), Expect = 1.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 70 EELIQSMDRINREIAKVEQQILKLKKKQVKV 100
EEL Q M + E+ +E++ L LKK+ V++
Sbjct: 493 EELQQDMQKFKNEVNTLEEEFLALKKEDVQL 523
>gi|17986270 dopamine receptor D2 isoform short [Homo sapiens]
Length = 414
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 18 SRYPPHSVKYT-FPSTRHQ---QDPTFGGKHEAPSSPISRQPCGDDQNASPSKLSKEELI 73
S PP +Y+ P + HQ DP+ G H P SP + G ++ K++K I
Sbjct: 257 STSPPERTRYSPIPPSHHQLTLPDPSHHGLHSTPDSPAKPEKNGHAKD--HPKIAKIFEI 314
Query: 74 QSM 76
Q+M
Sbjct: 315 QTM 317
>gi|4503385 dopamine receptor D2 isoform long [Homo sapiens]
Length = 443
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 18 SRYPPHSVKYT-FPSTRHQ---QDPTFGGKHEAPSSPISRQPCGDDQNASPSKLSKEELI 73
S PP +Y+ P + HQ DP+ G H P SP + G ++ K++K I
Sbjct: 286 STSPPERTRYSPIPPSHHQLTLPDPSHHGLHSTPDSPAKPEKNGHAKD--HPKIAKIFEI 343
Query: 74 QSM 76
Q+M
Sbjct: 344 QTM 346
>gi|32528268 glutamate receptor, metabotropic 7 isoform b
precursor [Homo sapiens]
Length = 922
Score = 28.1 bits (61), Expect = 1.8
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 17 QSRYPPHSVKYTFPSTRHQQDPTFGGKHEAPSSPISRQPCGDDQNASPSKLSKEELIQSM 76
Q Y PHS+ R + D T GG + S PCGD + + E ++ ++
Sbjct: 35 QEMYAPHSI-------RIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIH-RLEAMLYAL 86
Query: 77 DRINRE 82
D+IN +
Sbjct: 87 DQINSD 92
>gi|4504147 glutamate receptor, metabotropic 7 isoform a precursor
[Homo sapiens]
Length = 915
Score = 28.1 bits (61), Expect = 1.8
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 17 QSRYPPHSVKYTFPSTRHQQDPTFGGKHEAPSSPISRQPCGDDQNASPSKLSKEELIQSM 76
Q Y PHS+ R + D T GG + S PCGD + + E ++ ++
Sbjct: 35 QEMYAPHSI-------RIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIH-RLEAMLYAL 86
Query: 77 DRINRE 82
D+IN +
Sbjct: 87 DQINSD 92
>gi|239754415 PREDICTED: hypothetical protein XP_002345991 [Homo
sapiens]
Length = 205
Score = 28.1 bits (61), Expect = 1.8
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 14 STEQSRYPPHSVKYTFPSTRHQQDPTFG----GKHEAPSSPISRQPCGDDQNASP 64
+T+ R P + S + DPT G G H P S + Q G+D+ A+P
Sbjct: 14 ATQPRRVKPRPQGPSRKSRLGRPDPTHGMRSPGSHRVPGSVLGVQGGGEDRKAAP 68
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,433,140
Number of Sequences: 37866
Number of extensions: 247231
Number of successful extensions: 1122
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 142
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.