Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM21D Sequence: fasta or formatted (308aa) NCBI GI: 169190542
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         35           5
 C cysteine            0.0          0           0
 D aspartate           9.4         29           3
 E glutamate           7.5         23           2
 F phenylalanine       5.2         16           1
 G glycine             6.2         19           2
 H histidine           1.0          3           1
 I isoleucine          4.5         14           1
 K lysine              9.7         30           3
 L leucine             4.9         15           2
 M methionine          1.3          4           1
 N asparagine          2.9          9           1
 P proline             8.1         25           2
 Q glutamine           4.5         14           2
 R arginine            4.5         14           2
 S serine              9.1         28           3
 T threonine           5.8         18           2
 V valine              3.2         10           1
 W tryptophan          0.6          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
FAM21C                1.000   hypothetical protein LOC253725 
FAM21A                0.990   hypothetical protein LOC387680 
FAM21B                0.985   hypothetical protein LOC55747 
SYN1                  0.026   synapsin I isoform Ia 
VSX1                  0.022   visual system homeobox 1 isoform a 
MCM10                 0.020   minichromosome maintenance complex component 10 isof...
MCM10                 0.020   minichromosome maintenance complex component 10 isof...
EIF2AK4               0.020   eukaryotic translation initiation factor 2 alpha kin...
RBM26                 0.020   RNA binding motif protein 26 
CHD7                  0.019   chromodomain helicase DNA binding protein 7 
VSX1                  0.019   visual system homeobox 1 isoform b 
NOLC1                 0.019   nucleolar and coiled-body phosphoprotein 1 
RTN4                  0.017   reticulon 4 isoform E 
RTN4                  0.017   reticulon 4 isoform A 
EIF5B                 0.017   eukaryotic translation initiation factor 5B 
ANKRD24               0.017   ankyrin repeat domain 24 
AHI1                  0.017   Abelson helper integration site 1 isoform b 
AHI1                  0.017   Abelson helper integration site 1 isoform a 
AHI1                  0.017   Abelson helper integration site 1 isoform a 
AHI1                  0.017   Abelson helper integration site 1 isoform a 
IGDCC3                0.015   putative neuronal cell adhesion molecule 
CDC2L5                0.014   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.014   cell division cycle 2-like 5 isoform 2 
IRS4                  0.014   insulin receptor substrate 4 
ABCF1                 0.014   ATP-binding cassette, sub-family F, member 1 isoform...
INADL                 0.014   InaD-like 
HOXA13                0.012   homeobox A13 
PDS5B                 0.012   PDS5, regulator of cohesion maintenance, homolog B [H...
EPN2                  0.012   epsin 2 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press