Guide to the Human Genome
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Name: LOC100127946 Sequence: fasta or formatted (91aa) NCBI GI: 169203550
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {164aa} PREDICTED: hypothetical protein
alt prot {252aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5          5           1
 C cysteine            3.3          3           1
 D aspartate           3.3          3           1
 E glutamate           7.7          7           1
 F phenylalanine       1.1          1           1
 G glycine            13.2         12           1
 H histidine           2.2          2           1
 I isoleucine          5.5          5           1
 K lysine              3.3          3           1
 L leucine             9.9          9           2
 M methionine          2.2          2           1
 N asparagine          1.1          1           1
 P proline             8.8          8           2
 Q glutamine           5.5          5           1
 R arginine            5.5          5           2
 S serine              8.8          8           2
 T threonine           3.3          3           1
 V valine              4.4          4           1
 W tryptophan          3.3          3           1
 Y tyrosine            2.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100127946          0.760   PREDICTED: hypothetical protein 
SLC6A3                0.047   solute carrier family 6 (neurotransmitter transporter...
SLC6A4                0.047   solute carrier family 6 member 4 
GLI3                  0.029   GLI-Kruppel family member GLI3 
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.018   calcium channel, voltage-dependent, L type, alpha 1...
LPCAT2                0.018   lysophosphatidylcholine acyltransferase 2 
COL5A2                0.018   alpha 2 type V collagen preproprotein 
LOC100291878          0.012   PREDICTED: similar to RIKEN cDNA C230030N03 
IGSF1                 0.012   immunoglobulin superfamily, member 1 isoform 1 [Homo...
PCDHA13               0.012   protocadherin alpha 13 isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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