Guide to the Human Genome
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Name: LPCAT2 Sequence: fasta or formatted (544aa) NCBI GI: 47086907
Description:

lysophosphatidylcholine acyltransferase 2

Referenced in:

Calmodulin and Calcium
Lipid Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         40           2
 C cysteine            2.0         11           2
 D aspartate           4.6         25           2
 E glutamate           6.1         33           3
 F phenylalanine       5.9         32           2
 G glycine             5.9         32           2
 H histidine           1.5          8           1
 I isoleucine          6.4         35           2
 K lysine              5.3         29           2
 L leucine             9.9         54           3
 M methionine          1.8         10           1
 N asparagine          2.9         16           1
 P proline             7.2         39           3
 Q glutamine           4.0         22           2
 R arginine            4.6         25           2
 S serine              6.2         34           3
 T threonine           6.2         34           2
 V valine              9.0         49           2
 W tryptophan          1.1          6           1
 Y tyrosine            1.8         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lysophosphatidylcholine acyltransferase 2 
LPCAT1                0.391   lysophosphatidylcholine acyltransferase 1 
LPCAT4                0.329   lysophosphatidylcholine acyltransferase 4 
AGPAT9                0.040   1-acylglycerol-3-phosphate O-acyltransferase 9 [Homo...
PPP3R2                0.039   protein phosphatase 3 regulatory subunit B, beta iso...
HPCAL4                0.036   hippocalcin-like protein 4 
AGPAT6                0.035   lysophosphatidic acid acyltransferase zeta precursor...
PPP3R1                0.035   protein phosphatase 3, regulatory subunit B, alpha is...
VSNL1                 0.034   visinin-like 1 
GUCA1A                0.032   guanylate cyclase activator 1A (retina) 
HPCA                  0.032   hippocalcin 
NCALD                 0.032   neurocalcin delta 
NCALD                 0.032   neurocalcin delta 
NCALD                 0.032   neurocalcin delta 
NCALD                 0.032   neurocalcin delta 
NCALD                 0.032   neurocalcin delta 
NCALD                 0.032   neurocalcin delta 
NCALD                 0.032   neurocalcin delta 
NCALD                 0.032   neurocalcin delta 
HPCAL1                0.030   hippocalcin-like 1 
HPCAL1                0.030   hippocalcin-like 1 
LOC100294407          0.030   PREDICTED: similar to hCG2039376 
USP32                 0.030   ubiquitin specific protease 32 
KCNIP2                0.028   Kv channel interacting protein 2 isoform 5 
KCNIP2                0.028   Kv channel interacting protein 2 isoform 6 
KCNIP2                0.028   Kv channel interacting protein 2 isoform 3 
KCNIP2                0.028   Kv channel interacting protein 2 isoform 4 
KCNIP2                0.028   Kv channel interacting protein 2 isoform 1 
KCNIP2                0.028   Kv channel interacting protein 2 isoform 2 
KCNIP4                0.028   Kv channel interacting protein 4 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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