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Search of human proteins with 169202389
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169202389 PREDICTED: similar to mCG50504 [Homo sapiens]
(189 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169202389 PREDICTED: similar to mCG50504 [Homo sapiens] 382 e-106
gi|4506691 ribosomal protein S16 [Homo sapiens] 95 4e-20
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 51 5e-07
gi|41352718 deltex homolog 1 [Homo sapiens] 50 2e-06
gi|39812378 RAN binding protein 9 [Homo sapiens] 49 3e-06
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 47 7e-06
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 47 7e-06
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 47 7e-06
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 47 1e-05
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 45 4e-05
gi|122937321 UNC homeobox [Homo sapiens] 45 4e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 45 5e-05
gi|163965366 nascent polypeptide-associated complex alpha subuni... 45 5e-05
gi|18079216 CASK interacting protein 1 [Homo sapiens] 44 8e-05
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 43 1e-04
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 43 1e-04
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 43 1e-04
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 43 2e-04
gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens] 42 2e-04
gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens] 42 2e-04
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 42 3e-04
gi|237757312 synaptojanin 1 isoform c [Homo sapiens] 42 3e-04
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 42 3e-04
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 42 3e-04
gi|237757326 synaptojanin 1 isoform d [Homo sapiens] 42 3e-04
gi|154146199 sal-like 3 [Homo sapiens] 42 3e-04
gi|55750053 atrophin-1 [Homo sapiens] 42 3e-04
gi|55750041 atrophin-1 [Homo sapiens] 42 3e-04
gi|112421108 capicua homolog [Homo sapiens] 42 3e-04
gi|148727370 immediate early response 5-like [Homo sapiens] 42 3e-04
>gi|169202389 PREDICTED: similar to mCG50504 [Homo sapiens]
Length = 189
Score = 382 bits (981), Expect = e-106
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MGNIVILIVPLAILLVVLTTDRLPMEWFAGVDICVYVKSSGHVAQICAIQQYVSKSLVAY 60
MGNIVILIVPLAILLVVLTTDRLPMEWFAGVDICVYVKSSGHVAQICAIQQYVSKSLVAY
Sbjct: 1 MGNIVILIVPLAILLVVLTTDRLPMEWFAGVDICVYVKSSGHVAQICAIQQYVSKSLVAY 60
Query: 61 CQKYVNEASKKQIKDILIQYDWILLIADPLAANSKTALISHRPPSTAKLHREEDRTDPSR 120
CQKYVNEASKKQIKDILIQYDWILLIADPLAANSKTALISHRPPSTAKLHREEDRTDPSR
Sbjct: 61 CQKYVNEASKKQIKDILIQYDWILLIADPLAANSKTALISHRPPSTAKLHREEDRTDPSR 120
Query: 121 PPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANR 180
PPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANR
Sbjct: 121 PPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANR 180
Query: 181 TAPATPPGR 189
TAPATPPGR
Sbjct: 181 TAPATPPGR 189
>gi|4506691 ribosomal protein S16 [Homo sapiens]
Length = 146
Score = 94.7 bits (234), Expect = 4e-20
Identities = 51/73 (69%), Positives = 57/73 (78%)
Query: 23 LPMEWFAGVDICVYVKSSGHVAQICAIQQYVSKSLVAYCQKYVNEASKKQIKDILIQYDW 82
L E FAGVDI V VK GHVAQI AI+Q +SK+LVAY QKYV+EASKK+IKDILIQYD
Sbjct: 58 LGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDR 117
Query: 83 ILLIADPLAANSK 95
LL+ADP SK
Sbjct: 118 TLLVADPRRCESK 130
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 51.2 bits (121), Expect = 5e-07
Identities = 35/77 (45%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 118 PSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPAS------AAPPPSPPPR 171
P+ PPP P + APAR RAAA AATA + Q GP + AAPPP+P
Sbjct: 131 PAPPPPPAPVAAA---APARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAP 187
Query: 172 SGTAPPAN-RTAPATPP 187
APPA R AP PP
Sbjct: 188 PAVAPPAGPRRAP--PP 202
Score = 44.7 bits (104), Expect = 5e-05
Identities = 30/65 (46%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 126 PTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAP---PANRTA 182
P RG+ PAP R R A AA AAAAP P + APPP P P + AP P A
Sbjct: 102 PRRGATPPAPPRAPRGAPAAA----AAAAP---PPTPAPPPPPAPVAAAAPARAPRAAAA 154
Query: 183 PATPP 187
AT P
Sbjct: 155 AATAP 159
Score = 43.1 bits (100), Expect = 1e-04
Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 97 ALISHRPPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQ 156
A ++ P+ A T P P P +P ++ AP AA A A A AP
Sbjct: 138 APVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPL----AAPPPAPAAPPAVAPP 193
Query: 157 CGPASAAP-------PPSPPPRSGTAPPANRTAPATPP 187
GP A P PP PPP APP + P P
Sbjct: 194 AGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQP 231
Score = 29.6 bits (65), Expect = 1.6
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 121 PPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANR 180
P P TR + + A + + TA+ AT GP S +P P PP + P A+
Sbjct: 395 PAPGSGTR--QVFSMAAMNKEGGTASVAT--------GPDSPSPVPLPPGKPAL-PGADG 443
Query: 181 TAPATPPGR 189
T PPGR
Sbjct: 444 TPFGCPPGR 452
>gi|41352718 deltex homolog 1 [Homo sapiens]
Length = 620
Score = 49.7 bits (117), Expect = 2e-06
Identities = 35/84 (41%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 100 SHRPPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAA--AAPQC 157
S R S A L + + P+ P P P G A A +AT T AA AAP
Sbjct: 210 STRAASNAILASQRRKAPPAPPLPPPPPPGGPPGA-----LAVRPSATFTGAALWAAPAA 264
Query: 158 GPASAAPPPSPPPRSGTAPPANRT 181
GPA APPP PPRS AP RT
Sbjct: 265 GPAEPAPPPGAPPRSPGAPGGART 288
Score = 28.9 bits (63), Expect = 2.8
Identities = 22/66 (33%), Positives = 24/66 (36%), Gaps = 20/66 (30%)
Query: 140 RAAATAATATTAAAAPQCGPASAAPPPSPP-----------------PRSGTAPPANRTA 182
RAA+ A A+ AP PA PPP PP AP A
Sbjct: 212 RAASNAILASQRRKAP---PAPPLPPPPPPGGPPGALAVRPSATFTGAALWAAPAAGPAE 268
Query: 183 PATPPG 188
PA PPG
Sbjct: 269 PAPPPG 274
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 48.5 bits (114), Expect = 3e-06
Identities = 31/100 (31%), Positives = 40/100 (40%), Gaps = 18/100 (18%)
Query: 103 PPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARL---------------GRAAATAAT 147
PP + +++ + P P P G PAP + G AA
Sbjct: 6 PPPPPQQQQQQQQLSPPPPAALAPVSGVVLPAPPAVSAGSSPAGSPGGGAGGEGLGAAAA 65
Query: 148 ATTAAAAPQCGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
A P PA+AAPPP PPP PPA+ APA+ P
Sbjct: 66 ALLLHPPPPPPPATAAPPPPPPP---PPPPASAAAPASGP 102
Score = 32.3 bits (72), Expect = 0.25
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 121 PPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQC----GPASAAPPPSPPPRSGTAP 176
PPP P + P P A+ AA A+ A P GPA AP P+ S A
Sbjct: 72 PPPPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPTPALVAGSSAAA 131
Query: 177 P 177
P
Sbjct: 132 P 132
Score = 29.3 bits (64), Expect = 2.1
Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 97 ALISHRPPSTAKLHREEDRTDPSRPPPKEPTR-GSKTPAPARLGRAAATAATATTAAAAP 155
AL+ H PP P PPP S PAP L A A T A
Sbjct: 66 ALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPTPALV- 124
Query: 156 QCGPASAAPPP 166
G ++AAP P
Sbjct: 125 -AGSSAAAPFP 134
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 47.4 bits (111), Expect = 7e-06
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 126 PTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAP------PPSPP-----PRSGT 174
PT + TPAP T A T +A Q P+S+AP PP+PP P S +
Sbjct: 170 PTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSS 229
Query: 175 APPANRTAPATP 186
APP AP TP
Sbjct: 230 APPETTAAPPTP 241
Score = 42.0 bits (97), Expect = 3e-04
Identities = 32/91 (35%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 100 SHRPPSTAKLHREEDRTDP---SRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQ 156
S PP T T P S P E T TP+ L ++A+A TTAA P
Sbjct: 228 SSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAP-PT 286
Query: 157 CGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
+ APP SP P+ TA P T P + P
Sbjct: 287 PSATTPAPPSSPAPQETTAAPI--TTPNSSP 315
Score = 40.8 bits (94), Expect = 7e-04
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 10/122 (8%)
Query: 73 IKDILIQYDWILLIADPLAANSKTAL--ISHRPPSTAKLHREEDRTDPSRPPPKEPTRGS 130
+ L+ I + P A+ T L ++ P + + E+ S P
Sbjct: 101 VNPTLVATTQIPSVTFPSASTKITTLPNVTFLPQNATTISSRENVNTSSSVATLAPVN-- 158
Query: 131 KTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSP-----PPRSGTAPPANRTAPAT 185
+PAP A T + T A + P + A PP+P P S +APP AP T
Sbjct: 159 -SPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPT 217
Query: 186 PP 187
PP
Sbjct: 218 PP 219
Score = 40.0 bits (92), Expect = 0.001
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 121 PPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANR 180
P P++ T TP+ +++A TTAA A P S PP + APP
Sbjct: 160 PAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPP--- 216
Query: 181 TAPATPP 187
T PAT P
Sbjct: 217 TPPATTP 223
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 118 PSRPPPKEPTRGSKTPAPARLGRAAATAATATTAA-----AAPQCGPASAAPP------- 165
PS P E T TP+ +++A TTAA A P+S+APP
Sbjct: 180 PSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPP 239
Query: 166 ----PSPPPRSGTAPPANRTAPATP 186
+P P S +APP P TP
Sbjct: 240 TPSATTPAPLSSSAPPETTAVPPTP 264
Score = 39.7 bits (91), Expect = 0.002
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 19/106 (17%)
Query: 100 SHRPPSTAKLHREEDRTDPSRP----PPKE----PTRGSKTPAPARLGRAAATAATATTA 151
S PP T T + P PP+ PT + TPAP T A T
Sbjct: 182 SSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTP 241
Query: 152 AAAPQCGPASAAP------PPSP-----PPRSGTAPPANRTAPATP 186
+A +S+AP PP+P P S +APP AP TP
Sbjct: 242 SATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTP 287
Score = 39.3 bits (90), Expect = 0.002
Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 21/117 (17%)
Query: 91 AANSKTALISHRPPSTAKLHREEDRTDPSRP----PPK----EPTRGSKTPAPARLGRAA 142
+A ++ S PP T T P+ P PP+ PT + TPAP
Sbjct: 196 SATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPP 255
Query: 143 ATAATATTAAAAPQCGPASAAPPP------------SPPPRSGTAPPANRTAPATPP 187
T A T +A P+SA+ PP +P P S AP AP T P
Sbjct: 256 ETTAVPPTPSAT-TLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTP 311
Score = 29.6 bits (65), Expect = 1.6
Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 18/105 (17%)
Query: 91 AANSKTALISHRPPSTAKLHREEDRT--DPSRP--PPKE----PTRGSKTPAPARLGRAA 142
+A + L S PP T + T DPS PP+ PT + TPAP +
Sbjct: 242 SATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAP-----PS 296
Query: 143 ATAATATTAA--AAPQCGPASAAPPPSPPPRSGTAPPANRTAPAT 185
+ A TTAA P P + AP S + AP T T
Sbjct: 297 SPAPQETTAAPITTPNSSPTTLAPDTS---ETSAAPTHQTTTSVT 338
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 47.4 bits (111), Expect = 7e-06
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 126 PTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAP------PPSPP-----PRSGT 174
PT + TPAP T A T +A Q P+S+AP PP+PP P S +
Sbjct: 170 PTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSS 229
Query: 175 APPANRTAPATP 186
APP AP TP
Sbjct: 230 APPETTAAPPTP 241
Score = 42.0 bits (97), Expect = 3e-04
Identities = 32/91 (35%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 100 SHRPPSTAKLHREEDRTDP---SRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQ 156
S PP T T P S P E T TP+ L ++A+A TTAA P
Sbjct: 228 SSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAP-PT 286
Query: 157 CGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
+ APP SP P+ TA P T P + P
Sbjct: 287 PSATTPAPPSSPAPQETTAAPI--TTPNSSP 315
Score = 40.8 bits (94), Expect = 7e-04
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 10/122 (8%)
Query: 73 IKDILIQYDWILLIADPLAANSKTAL--ISHRPPSTAKLHREEDRTDPSRPPPKEPTRGS 130
+ L+ I + P A+ T L ++ P + + E+ S P
Sbjct: 101 VNPTLVATTQIPSVTFPSASTKITTLPNVTFLPQNATTISSRENVNTSSSVATLAPVN-- 158
Query: 131 KTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSP-----PPRSGTAPPANRTAPAT 185
+PAP A T + T A + P + A PP+P P S +APP AP T
Sbjct: 159 -SPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPT 217
Query: 186 PP 187
PP
Sbjct: 218 PP 219
Score = 40.0 bits (92), Expect = 0.001
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 121 PPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANR 180
P P++ T TP+ +++A TTAA A P S PP + APP
Sbjct: 160 PAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPP--- 216
Query: 181 TAPATPP 187
T PAT P
Sbjct: 217 TPPATTP 223
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 118 PSRPPPKEPTRGSKTPAPARLGRAAATAATATTAA-----AAPQCGPASAAPP------- 165
PS P E T TP+ +++A TTAA A P+S+APP
Sbjct: 180 PSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPP 239
Query: 166 ----PSPPPRSGTAPPANRTAPATP 186
+P P S +APP P TP
Sbjct: 240 TPSATTPAPLSSSAPPETTAVPPTP 264
Score = 39.7 bits (91), Expect = 0.002
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 19/106 (17%)
Query: 100 SHRPPSTAKLHREEDRTDPSRP----PPKE----PTRGSKTPAPARLGRAAATAATATTA 151
S PP T T + P PP+ PT + TPAP T A T
Sbjct: 182 SSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTP 241
Query: 152 AAAPQCGPASAAP------PPSP-----PPRSGTAPPANRTAPATP 186
+A +S+AP PP+P P S +APP AP TP
Sbjct: 242 SATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTP 287
Score = 39.3 bits (90), Expect = 0.002
Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 21/117 (17%)
Query: 91 AANSKTALISHRPPSTAKLHREEDRTDPSRP----PPK----EPTRGSKTPAPARLGRAA 142
+A ++ S PP T T P+ P PP+ PT + TPAP
Sbjct: 196 SATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPP 255
Query: 143 ATAATATTAAAAPQCGPASAAPPP------------SPPPRSGTAPPANRTAPATPP 187
T A T +A P+SA+ PP +P P S AP AP T P
Sbjct: 256 ETTAVPPTPSAT-TLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTP 311
Score = 29.6 bits (65), Expect = 1.6
Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 18/105 (17%)
Query: 91 AANSKTALISHRPPSTAKLHREEDRT--DPSRP--PPKE----PTRGSKTPAPARLGRAA 142
+A + L S PP T + T DPS PP+ PT + TPAP +
Sbjct: 242 SATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAP-----PS 296
Query: 143 ATAATATTAA--AAPQCGPASAAPPPSPPPRSGTAPPANRTAPAT 185
+ A TTAA P P + AP S + AP T T
Sbjct: 297 SPAPQETTAAPITTPNSSPTTLAPDTS---ETSAAPTHQTTTSVT 338
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 47.4 bits (111), Expect = 7e-06
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 126 PTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAP------PPSPP-----PRSGT 174
PT + TPAP T A T +A Q P+S+AP PP+PP P S +
Sbjct: 170 PTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSS 229
Query: 175 APPANRTAPATP 186
APP AP TP
Sbjct: 230 APPETTAAPPTP 241
Score = 42.0 bits (97), Expect = 3e-04
Identities = 32/91 (35%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 100 SHRPPSTAKLHREEDRTDP---SRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQ 156
S PP T T P S P E T TP+ L ++A+A TTAA P
Sbjct: 228 SSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAP-PT 286
Query: 157 CGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
+ APP SP P+ TA P T P + P
Sbjct: 287 PSATTPAPPSSPAPQETTAAPI--TTPNSSP 315
Score = 40.8 bits (94), Expect = 7e-04
Identities = 32/122 (26%), Positives = 47/122 (38%), Gaps = 10/122 (8%)
Query: 73 IKDILIQYDWILLIADPLAANSKTAL--ISHRPPSTAKLHREEDRTDPSRPPPKEPTRGS 130
+ L+ I + P A+ T L ++ P + + E+ S P
Sbjct: 101 VNPTLVATTQIPSVTFPSASTKITTLPNVTFLPQNATTISSRENVNTSSSVATLAPVN-- 158
Query: 131 KTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSP-----PPRSGTAPPANRTAPAT 185
+PAP A T + T A + P + A PP+P P S +APP AP T
Sbjct: 159 -SPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPT 217
Query: 186 PP 187
PP
Sbjct: 218 PP 219
Score = 40.0 bits (92), Expect = 0.001
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 121 PPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANR 180
P P++ T TP+ +++A TTAA A P S PP + APP
Sbjct: 160 PAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPP--- 216
Query: 181 TAPATPP 187
T PAT P
Sbjct: 217 TPPATTP 223
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 118 PSRPPPKEPTRGSKTPAPARLGRAAATAATATTAA-----AAPQCGPASAAPP------- 165
PS P E T TP+ +++A TTAA A P+S+APP
Sbjct: 180 PSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPP 239
Query: 166 ----PSPPPRSGTAPPANRTAPATP 186
+P P S +APP P TP
Sbjct: 240 TPSATTPAPLSSSAPPETTAVPPTP 264
Score = 39.7 bits (91), Expect = 0.002
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 19/106 (17%)
Query: 100 SHRPPSTAKLHREEDRTDPSRP----PPKE----PTRGSKTPAPARLGRAAATAATATTA 151
S PP T T + P PP+ PT + TPAP T A T
Sbjct: 182 SSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTP 241
Query: 152 AAAPQCGPASAAP------PPSP-----PPRSGTAPPANRTAPATP 186
+A +S+AP PP+P P S +APP AP TP
Sbjct: 242 SATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTP 287
Score = 39.3 bits (90), Expect = 0.002
Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 21/117 (17%)
Query: 91 AANSKTALISHRPPSTAKLHREEDRTDPSRP----PPK----EPTRGSKTPAPARLGRAA 142
+A ++ S PP T T P+ P PP+ PT + TPAP
Sbjct: 196 SATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPP 255
Query: 143 ATAATATTAAAAPQCGPASAAPPP------------SPPPRSGTAPPANRTAPATPP 187
T A T +A P+SA+ PP +P P S AP AP T P
Sbjct: 256 ETTAVPPTPSAT-TLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTP 311
Score = 29.6 bits (65), Expect = 1.6
Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 18/105 (17%)
Query: 91 AANSKTALISHRPPSTAKLHREEDRT--DPSRP--PPKE----PTRGSKTPAPARLGRAA 142
+A + L S PP T + T DPS PP+ PT + TPAP +
Sbjct: 242 SATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAP-----PS 296
Query: 143 ATAATATTAA--AAPQCGPASAAPPPSPPPRSGTAPPANRTAPAT 185
+ A TTAA P P + AP S + AP T T
Sbjct: 297 SPAPQETTAAPITTPNSSPTTLAPDTS---ETSAAPTHQTTTSVT 338
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 47.0 bits (110), Expect = 1e-05
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 101 HRPPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAP----ARLGRAAATAATATTAAAAPQ 156
H+PP + H+++ P + K PAP A ++A AT T+ A P
Sbjct: 85 HQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGAPPG 144
Query: 157 CGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
GP P P+PPP +APP P TPP
Sbjct: 145 SGP---GPTPTPPPAVTSAPPG--APPPTPP 170
Score = 43.9 bits (102), Expect = 8e-05
Identities = 22/79 (27%), Positives = 33/79 (41%)
Query: 110 HREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPP 169
H+++ + P +PPP++P P P + ++ GP A S P
Sbjct: 66 HQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAP 125
Query: 170 PRSGTAPPANRTAPATPPG 188
P S +APPA PPG
Sbjct: 126 PASSSAPPATPPTSGAPPG 144
Score = 41.6 bits (96), Expect = 4e-04
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 103 PPSTAKLHREEDRTDPSRPPPKEPT------RGSKTPAPARLGRAAATAATATTAAAAPQ 156
PP + + P +PPP +P + + P P + A A
Sbjct: 64 PPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGS 123
Query: 157 CGPASAAPPPSPPPRSGTAPPANRTAPA-TPP 187
PAS++ PP+ PP SG APP + P TPP
Sbjct: 124 APPASSSAPPATPPTSG-APPGSGPGPTPTPP 154
Score = 33.1 bits (74), Expect = 0.15
Identities = 22/80 (27%), Positives = 26/80 (32%), Gaps = 10/80 (12%)
Query: 119 SRPPPKEPTRGSK---------TPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPP 169
S PP PT G+ TP PA ++ P P + PPP P
Sbjct: 130 SAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPA 189
Query: 170 PRSGTAP-PANRTAPATPPG 188
G P P P P G
Sbjct: 190 AVPGPGPGPKQGPGPGGPKG 209
Score = 29.3 bits (64), Expect = 2.1
Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 118 PSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPP 177
P PPP P+ G T P + G A P+ GP P P G P
Sbjct: 162 PGAPPPTPPSSGVPT-TPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMP--GGPKP 218
Query: 178 ANRTAPATPPG 188
+TP G
Sbjct: 219 GGGPGLSTPGG 229
Score = 28.5 bits (62), Expect = 3.6
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 156 QCGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
Q GP PPP PP + PP + P PP
Sbjct: 53 QSGPKPPIPPP-PPHQQQQQPPPQQPPPQQPP 83
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 45.1 bits (105), Expect = 4e-05
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 96 TALISHRPPS---TAKLHREE-DRTDPSRPPPKEPTRGSKTPAPARL---GRAAATAATA 148
TA ++ +PP T L R + D + P + P R S T P R G + + T
Sbjct: 400 TASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTPPRASPTGTPSRASPTG 459
Query: 149 TTAAAAPQCGPASAAPPPSPPPRSGTAPPANRTAPATP 186
T + A+P P++A+P SP S T P+ + TP
Sbjct: 460 TQSTASPTGSPSTASPTGSPSTASPTGSPSRASLTRTP 497
Score = 43.5 bits (101), Expect = 1e-04
Identities = 33/89 (37%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 102 RPPSTAKLHREEDRTDPSRPPPKEPTRGSKT--PAPARLGRAAATAA-TATTAAAAPQCG 158
R PST L R PS P P+R S T P+ A L + +TA+ T T A+P
Sbjct: 575 RTPSTVLL----TRMPPSASPTGMPSRTSPTGMPSSALLTKMDSTASITRTPPRASPTET 630
Query: 159 PASAAPPPSPPPRSGTAPPANRTAPATPP 187
P A+P +PP S T P + TPP
Sbjct: 631 PPRASPTGTPPRASPTGTPPRASPTGTPP 659
Score = 43.1 bits (100), Expect = 1e-04
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 104 PSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAA-TATTAAAAPQCGPASA 162
PSTA L R R P+ P + G P+ A L + +TA+ T T + A+P P A
Sbjct: 170 PSTASLTRTPPRASPTGMPSRTSPTGM--PSTASLTKMDSTASITRTLSRASPTGTPPRA 227
Query: 163 APPPSPPPRSGTAPPANRTAPATPP 187
+P SPP S + P+ TPP
Sbjct: 228 SPTGSPPRASLSMMPSTALLIRTPP 252
Score = 38.9 bits (89), Expect = 0.003
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 104 PSTAKLHREEDRTDPSRPPPKEPTRGS--------KTPAPARLGRAAATAATATTAAAAP 155
PSTA L P+ PP+ G+ K P + G + T+ T + A+P
Sbjct: 371 PSTASLTGLSSTASPTGTPPRASPTGTPSTASLTRKPPRASPTGMLSRTSITKMDSTASP 430
Query: 156 QCGPASAAPPPSPPPRSGTAPPANRTAPAT 185
P A+P +PP S T P+ + T
Sbjct: 431 TRTPPRASPTGTPPRASPTGTPSRASPTGT 460
Score = 37.0 bits (84), Expect = 0.010
Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 20/100 (20%)
Query: 102 RPPSTAKLHREEDRTDPSRPPPK--------------EPTRGSKTPAPARLGRAAATAAT 147
R PS A L R R +R P+ P+R S T P+R A+ + T
Sbjct: 87 RTPSMASLKRMPPRASRTRTLPRASLMRRPSTASLTRSPSRASLTTTPSR----ASLSMT 142
Query: 148 ATTAAAAPQCGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
+TAAA P+ A+ +PP S T P+ + TPP
Sbjct: 143 PSTAAALTM--PSRASLTRTPPRASLTMTPSTASLTRTPP 180
Score = 36.2 bits (82), Expect = 0.017
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 87 ADPLAANSKTALISHRPPSTAKLHREEDRTDPSRPPPK-----EPTRGSKTPAPARLGRA 141
A P S+T+L + STA + R R +R P + +P+ S T P+R
Sbjct: 311 ASPTGMLSRTSLT--KMDSTASISRTPPRASITRTPSRASPTGKPSTASPTGTPSRASPT 368
Query: 142 AATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
+ + + T ++ +A+P +PP S T P+ + PP
Sbjct: 369 GSPSTASLTGLSS------TASPTGTPPRASPTGTPSTASLTRKPP 408
Score = 36.2 bits (82), Expect = 0.017
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 84 LLIADPLAANSKTALISHRPPSTAKLHREEDRTDP-----SRPPPKEPTRGSKT--PAPA 136
+L L TA IS PP A + R R P + P P+R S T P+ A
Sbjct: 316 MLSRTSLTKMDSTASISRTPP-RASITRTPSRASPTGKPSTASPTGTPSRASPTGSPSTA 374
Query: 137 RLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANRTA 182
L ++TA+ T A G S A PPR+ +RT+
Sbjct: 375 SLTGLSSTASPTGTPPRASPTGTPSTASLTRKPPRASPTGMLSRTS 420
Score = 32.3 bits (72), Expect = 0.25
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 104 PSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAA-TATTAAAAPQCGPASA 162
PSTA P+ P + ++TP+ A L + +TA+ T T + A+P P++A
Sbjct: 470 PSTASPTGSPSTASPTGSPSRASL--TRTPSRASLTKMESTASITRTPSRASPTWTPSTA 527
Query: 163 APPPSP--------PPRSGTAPPANRTAPATPPGR 189
+P SP P R+ +R + P R
Sbjct: 528 SPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSR 562
Score = 31.6 bits (70), Expect = 0.43
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 17/99 (17%)
Query: 105 STAKLHREEDRTDPSRPPPKEPTRGS----------------KTPAPARLGRAAATAATA 148
STA + R R P+ P GS +TP+ A L R + A+
Sbjct: 507 STASITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSRASLT 566
Query: 149 TTAAAAPQCGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
T + A+ P++ PP S T P +RT+P P
Sbjct: 567 TPSRASLTRTPSTVLLTRMPPSASPTGMP-SRTSPTGMP 604
Score = 31.6 bits (70), Expect = 0.43
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 104 PSTAKLHREED-----RTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCG 158
PS+A L + + RT P P + P R S T P R + T T A+P
Sbjct: 604 PSSALLTKMDSTASITRTPPRASPTETPPRASPTGTPPR------ASPTGTPPRASPTGT 657
Query: 159 PASAAPPPSPPPRSGT 174
P A+P +P S T
Sbjct: 658 PPRASPTGTPSRASPT 673
Score = 31.2 bits (69), Expect = 0.56
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 121 PPPKEPTRGS--KTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPA 178
PP + P+R S +TP+ A L + A+ T + A G S A PPR+
Sbjct: 3 PPTRTPSRASPTRTPSTASLTGTPSRASLTGTPSTASLMGTPSRASLTGTPPRASLKGTT 62
Query: 179 NRTAPATPPGR 189
+ + P R
Sbjct: 63 SMASLMVSPSR 73
Score = 31.2 bits (69), Expect = 0.56
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 102 RPPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPAS 161
R PSTA L R R + P + S TP+ A + A+ T A S
Sbjct: 114 RRPSTASLTRSPSRASLTTTPSRASL--SMTPSTAAALTMPSRASLTRTPPRASLTMTPS 171
Query: 162 AAPPPSPPPRSGTAPPANRTAPATPP 187
A PPR+ +RT+P P
Sbjct: 172 TASLTRTPPRASPTGMPSRTSPTGMP 197
Score = 28.9 bits (63), Expect = 2.8
Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 13/107 (12%)
Query: 87 ADPLAANSKTALISHRPPSTAKLHREEDRTDPSRPPPKEPTRG------SKTPAPARLGR 140
A P S+T+L + STA + R PSRP PT S TP+ A L R
Sbjct: 254 ASPTGMLSRTSLT--KMDSTASITRT-----PSRPSTASPTGTPSRASLSMTPSTASLMR 306
Query: 141 AAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
A+ + S A PPR+ +R +P P
Sbjct: 307 MLPRASPTGMLSRTSLTKMDSTASISRTPPRASITRTPSRASPTGKP 353
Score = 28.5 bits (62), Expect = 3.6
Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 90 LAANSKTALISHRPPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATAT 149
L TA I+ PP + T P P P R S T P R + T T
Sbjct: 609 LTKMDSTASITRTPPRAS-----PTETPPRASPTGTPPRASPTGTPPR------ASPTGT 657
Query: 150 TAAAAPQCGPASAAP 164
A+P P+ A+P
Sbjct: 658 PPRASPTGTPSRASP 672
Score = 27.3 bits (59), Expect = 8.0
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 104 PSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAA 163
PSTA R +R P + ++TP+ A L + + T T + P SA+
Sbjct: 533 PSTALAMGSPSRAALTRTPSRASL--TRTPSRASLTTPSRASLTRTPSTVLLTRMPPSAS 590
Query: 164 PPPSPPPRSGTAPPAN 179
P P S T P++
Sbjct: 591 PTGMPSRTSPTGMPSS 606
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 45.1 bits (105), Expect = 4e-05
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 120 RPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPAS-AAPPPSPPPRSGTAPPA 178
R P + G+ PAPA A+ AAT G A A PPP+P PR G PP+
Sbjct: 442 RSPDAVASPGAPAPAPAPFRDLASAAATEGGGGDCADAGTAGPAPPPPAPSPRPGPRPPS 501
Query: 179 NRTAPAT 185
PAT
Sbjct: 502 PAEEPAT 508
Score = 31.2 bits (69), Expect = 0.56
Identities = 25/75 (33%), Positives = 27/75 (36%), Gaps = 23/75 (30%)
Query: 121 PPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPA-- 178
P P EP P PA G A + A TA A PP PP GT PA
Sbjct: 244 PEPPEP------PPPAAKGPGAHASGAAGTAPA-----------PPGEPPAPGTCDPAFY 286
Query: 179 ----NRTAPATPPGR 189
+ P PGR
Sbjct: 287 PSQRSGAGPQPRPGR 301
Score = 30.8 bits (68), Expect = 0.73
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 119 SRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPA---SAAPPPSPPPRSGTA 175
S PP+ P +K P G A A A C PA S P PR G
Sbjct: 243 SPEPPEPPPPAAKGPGAHASGAAGTAPAPPGEPPAPGTCDPAFYPSQRSGAGPQPRPGR- 301
Query: 176 PPANRTAPATPPG 188
PA++ A + PG
Sbjct: 302 -PADKDAASCGPG 313
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 44.7 bits (104), Expect = 5e-05
Identities = 28/73 (38%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 121 PPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPP-PRSGTAPPAN 179
P PK G+ P +G AA A A + AAP +AAPPP PP P + PP +
Sbjct: 227 PLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGH 286
Query: 180 -----RTAPATPP 187
APA PP
Sbjct: 287 PAGPPTAAPAVPP 299
Score = 38.1 bits (87), Expect = 0.005
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 103 PPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAP-----QC 157
PP+ A L R P+ PP P PA A+ G +A A AA P Q
Sbjct: 274 PPAPATLARPPGH--PAGPPTAAP--AVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQP 329
Query: 158 GPASAAPPPSPPPRSGT-------APPANRTAPATPP 187
GP +AA P+P ++ + APPA +T A+ P
Sbjct: 330 GPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGP 366
Score = 37.0 bits (84), Expect = 0.010
Identities = 32/79 (40%), Positives = 34/79 (43%), Gaps = 15/79 (18%)
Query: 120 RPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQ--CGPASAA--------PPPSPP 169
RPPP E + GS P PA AAA AA A A P GPA+ A P P P
Sbjct: 127 RPPP-EGSAGSCAPVPA----AAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPG 181
Query: 170 PRSGTAPPANRTAPATPPG 188
P G PA A T G
Sbjct: 182 PGPGPGKPAGPGAAQTLNG 200
Score = 35.0 bits (79), Expect = 0.038
Identities = 23/82 (28%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 118 PSRPPPKEPTR-----------GSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPP 166
P RP P P R P P + A A AA P+ PA A P
Sbjct: 102 PQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPA 161
Query: 167 SPPPRSGTAPPANRTAPATPPG 188
P + A P P PG
Sbjct: 162 GPAALAARAGPGPGPGPGPGPG 183
Score = 33.9 bits (76), Expect = 0.086
Identities = 30/82 (36%), Positives = 33/82 (40%), Gaps = 17/82 (20%)
Query: 118 PSRPPPKEPTRGSKTPAPARLGRAAATAATATTA-------AAAPQCGPASAAPPPSPP- 169
P+ PP P PAPA L R A TA AAA G A AAP P+P
Sbjct: 266 PAAAPPPPP------PAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAA 319
Query: 170 --PRSGTAPPANRTAPATP-PG 188
P + P A A P PG
Sbjct: 320 GGPAGVSGQPGPGAAAAAPAPG 341
Score = 33.5 bits (75), Expect = 0.11
Identities = 19/53 (35%), Positives = 22/53 (41%)
Query: 135 PARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
PA L AA T P G A+ P +P P + AP A AP PP
Sbjct: 222 PAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPP 274
Score = 32.3 bits (72), Expect = 0.25
Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 104 PSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAA 163
P AKL + + S P + P PA G A A A A P GP
Sbjct: 121 PPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGP-GPG 179
Query: 164 PPPSPPPRSGTAPPANRT 181
P P P P P A +T
Sbjct: 180 PGPGPGPGKPAGPGAAQT 197
Score = 30.0 bits (66), Expect = 1.2
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 19/111 (17%)
Query: 91 AANSKTALISHRPPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATT 150
AA +L+++ P + L + + PP + PAPA AA A A
Sbjct: 210 AAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPF--VGAAAPPAPAAPSPPAAPAPAAPA 267
Query: 151 AAAAPQ--------------CGPASAAP---PPSPPPRSGTAPPANRTAPA 184
AA P GP +AAP PP+ G+A A APA
Sbjct: 268 AAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPA 318
Score = 28.9 bits (63), Expect = 2.8
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 131 KTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANRTAP 183
+ A LG + + A A A P PA AP +P P PPA R P
Sbjct: 51 RAAAAGALGNHVVSGSPAGAAGAGP-AAPAEGAPGAAPEP-----PPAGRARP 97
Score = 28.1 bits (61), Expect = 4.7
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 15/67 (22%)
Query: 134 APARLGRAAATAATATTAAAAPQCGPASAAPP-------PSPP-PR-----SGTAPPANR 180
+PA A A AAP+ PA A P P PP PR +G APPA +
Sbjct: 66 SPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAK 125
Query: 181 TAPATPP 187
P PP
Sbjct: 126 LRP--PP 130
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 44.7 bits (104), Expect = 5e-05
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 104 PSTAKLHREEDRTDPSRPPPK-EPTRGSKTPAPARLGRAAATAATATTAAA----APQCG 158
P+T + P+ PPPK PT + TP + G A A A +P+ G
Sbjct: 1241 PTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGG 1300
Query: 159 PASAAPPPSPPPRSGTAPPANRTAPATPP 187
PA++ P +P P + T PP+ + +P TPP
Sbjct: 1301 PATSPPKGAPTPPAAT-PPSPKGSPGTPP 1328
Score = 41.2 bits (95), Expect = 5e-04
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 14/78 (17%)
Query: 122 PPKE-----------PTRGSKTPAPARLGRAAATAATATTAAA--APQCGPASAAPPPSP 168
PPKE P G TPAP + + T+++ A A AP+ PAS +P +P
Sbjct: 881 PPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAP 940
Query: 169 PPRSGTAPPANRTAPATP 186
P + T PP+ + PATP
Sbjct: 941 TPPAAT-PPSPKGGPATP 957
Score = 40.8 bits (94), Expect = 7e-04
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 116 TDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTA 175
T P+ PP P G TP+P + A T AT +P+ GPA+ +P +P P + T
Sbjct: 941 TPPAATPPS-PKGGPATPSP----KWAPTPPAAT--PPSPKGGPATPSPKGAPTPPAAT- 992
Query: 176 PPANRTAPATP 186
PP+ + PATP
Sbjct: 993 PPSPKGGPATP 1003
Score = 40.0 bits (92), Expect = 0.001
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Query: 118 PSRPPPK-EPTRGSKTPAPARLGRAAATAATATTAAAA----PQCGPASAAPP--PSPP- 169
P+ P PK PT + TP + G A + A T AA P+ GPA+ +P P+PP
Sbjct: 931 PASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPA 990
Query: 170 -----PRSGTAPPANRTAPATPP 187
P+ G A P+ + AP TPP
Sbjct: 991 ATPPSPKGGPATPSPKGAP-TPP 1012
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 118 PSRPPPK-EPTRGSKTPAPARLGRAAATAATATTAAAA----PQCGPASAAPPPSPPPRS 172
P+ P PK PT + TP + G A + A T AA P+ GPA+ +P +P P +
Sbjct: 954 PATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPA 1013
Query: 173 GTAPPANRTAPATPP 187
T PP+ + +PA P
Sbjct: 1014 VT-PPSPKGSPAATP 1027
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 116 TDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTA 175
T P+ PP P G TP+P + A T AT + P+ GPA+ P +P P + T
Sbjct: 1219 TTPAATPPS-PKGGLATPSP----KGAPTTPAATPPS--PKGGPATPPPKGAPTPPAAT- 1270
Query: 176 PPANRTAPATPP 187
PP+ + ATPP
Sbjct: 1271 PPSLKGGLATPP 1282
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 116 TDPSRPPPKEPTRGSKTPAPARLGRAAATAATATT-----AAAAPQCGPASAAPPPSPPP 170
T P+ PP P G TP+P G AAT + A +P+ P + A P P P
Sbjct: 1173 TTPAATPPS-PKGGLATPSPK--GAPTTPAATPPSPKGGLATPSPKGAPTTPAATP-PSP 1228
Query: 171 RSGTAPPANRTAPATP 186
+ G A P+ + AP TP
Sbjct: 1229 KGGLATPSPKGAPTTP 1244
Score = 38.9 bits (89), Expect = 0.003
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 121 PPPK-EPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSP---PPRSGTAP 176
P PK PT + TP + G A + A T AA P PSP P P
Sbjct: 1189 PSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATP 1248
Query: 177 PANRTAPATPP 187
P+ + PATPP
Sbjct: 1249 PSPKGGPATPP 1259
Score = 38.1 bits (87), Expect = 0.005
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 116 TDPSRPPPKEPTRGSKTPAPARLGRAAATAATATT-----AAAAPQCGPASAAPPPSPPP 170
T P+ PP P G TP P G AAT + A +P+ P + A P P P
Sbjct: 1150 TTPAATPPS-PKGGLATPPPK--GAPTTPAATPPSPKGGLATPSPKGAPTTPAATP-PSP 1205
Query: 171 RSGTAPPANRTAPATP 186
+ G A P+ + AP TP
Sbjct: 1206 KGGLATPSPKGAPTTP 1221
Score = 37.4 bits (85), Expect = 0.008
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 116 TDPSRPPPKEPTRGSKTPAPARLGRA-AATAATATTAAAAPQCGPASAAPPPSPP-PRSG 173
T P+ PP P G TP+P AAT + A P A P +PP P+ G
Sbjct: 1081 TPPAATPPS-PKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGG 1139
Query: 174 TAPPANRTAPATP 186
A P + AP TP
Sbjct: 1140 LATPPPKGAPTTP 1152
Score = 37.4 bits (85), Expect = 0.008
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 116 TDPSRPPPKEPTRGSKTPAPARLGRA-AATAATATTAAAAPQCGPASAAPPPSPP-PRSG 173
T P+ PP P G TP P AAT + A P A P +PP P+ G
Sbjct: 1127 TTPAATPPS-PKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGG 1185
Query: 174 TAPPANRTAPATP 186
A P+ + AP TP
Sbjct: 1186 LATPSPKGAPTTP 1198
Score = 36.6 bits (83), Expect = 0.013
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 116 TDPSRPPPKEPTRGSKTPAPARLGRAAATAATATT-----AAAAPQCGPASAAPPPSPPP 170
T P+ PP P G TP+P G AAT + A +P+ P + A P P P
Sbjct: 1196 TTPAATPPS-PKGGLATPSPK--GAPTTPAATPPSPKGGLATPSPKGAPTTPAATP-PSP 1251
Query: 171 RSGTAPPANRTAP----ATPP 187
+ G A P + AP ATPP
Sbjct: 1252 KGGPATPPPKGAPTPPAATPP 1272
Score = 35.8 bits (81), Expect = 0.023
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 119 SRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPA--SAAPPPSPPPRSGTAP 176
S PP P +PA L + A T AT + P+ GPA S P+PP + P
Sbjct: 1033 STPPAATPPSPKGSPAATPLPKGAPTTPAATLPS--PKGGPATPSLKGAPTPPAAT---P 1087
Query: 177 PANRTAPATP 186
P+ + PATP
Sbjct: 1088 PSPKGGPATP 1097
Score = 35.4 bits (80), Expect = 0.029
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 118 PSRPPPK-EPTRGSKTPAPARLGRAAAT--AATATTAAAAPQCGPASAAPPPS------- 167
P+ P PK P + TP + G A A T AA P A PPP
Sbjct: 1094 PATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPA 1153
Query: 168 ---PPPRSGTAPPANRTAPATP 186
P P+ G A P + AP TP
Sbjct: 1154 ATPPSPKGGLATPPPKGAPTTP 1175
Score = 35.0 bits (79), Expect = 0.038
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 116 TDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGP----ASAAPPPSPPPR 171
T P+ PP P G TP+P G A T + +P P AS P +PP
Sbjct: 987 TPPAATPPS-PKGGPATPSPK--GAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSP 1043
Query: 172 SGT--APPANRTAPATP 186
G+ A P + AP TP
Sbjct: 1044 KGSPAATPLPKGAPTTP 1060
Score = 35.0 bits (79), Expect = 0.038
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 118 PSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAP-----PPS---PP 169
P+ P P+ P+ G AAT + P+ GPA+ +P PP+ P
Sbjct: 1057 PTTPAATLPSPKGGPATPSLKGAPTPPAATPPS----PKGGPATPSPKGAPMPPAATPPS 1112
Query: 170 PRSGTAPPANRTAPATP 186
P+ G A P ++ AP TP
Sbjct: 1113 PKGGLATPPHKGAPTTP 1129
Score = 34.7 bits (78), Expect = 0.050
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 121 PPPK-EPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSP---PPRSGTAP 176
PPPK PT + TP + G A A T AA P PSP P P
Sbjct: 1143 PPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATP 1202
Query: 177 PANRTAPATP 186
P+ + ATP
Sbjct: 1203 PSPKGGLATP 1212
Score = 34.7 bits (78), Expect = 0.050
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 25/121 (20%)
Query: 88 DPLAANSKTALISHRPPSTAKLHREEDRTDPSR--PPPKE----PTRGSKTPAPARLGRA 141
DP+A + L+S + P+T L +E P+ P PK+ PT P+ +
Sbjct: 1525 DPIAPTA--TLLSKKTPAT--LAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEAS 1580
Query: 142 AATAATATTAAAAPQC------------GPASAAPPPS---PPPRSGTAPPANRTAPATP 186
+ A T +T AP P A PP+ P P G A PA + P +P
Sbjct: 1581 SPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSP 1640
Query: 187 P 187
P
Sbjct: 1641 P 1641
Score = 34.3 bits (77), Expect = 0.066
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 122 PPKEPTRGSKTPAPARLGRAAATAATATTAAAA----PQCGPASAAPPPSPPPRSGTAPP 177
P PT + T + G A + A T AA P+ GPA+ +P +P P + T PP
Sbjct: 1053 PKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAAT-PP 1111
Query: 178 ANRTAPATPP 187
+ + ATPP
Sbjct: 1112 SPKGGLATPP 1121
Score = 33.5 bits (75), Expect = 0.11
Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 21/90 (23%)
Query: 118 PSRPPPK-EPTRGSKTPAPARLGRAAAT-----AATATTAAAAPQCGPASAAPPPS---- 167
P+ P PK PT + TP P+ G AAT A+T A G +A P P
Sbjct: 1000 PATPSPKGAPTPPAVTP-PSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPT 1058
Query: 168 ------PPPRSGTAPPANRTAP----ATPP 187
P P+ G A P+ + AP ATPP
Sbjct: 1059 TPAATLPSPKGGPATPSLKGAPTPPAATPP 1088
Score = 32.7 bits (73), Expect = 0.19
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 12/90 (13%)
Query: 103 PPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASA 162
PP A P P P +G+ TP A T + P P+S
Sbjct: 1305 PPKGAPTPPAATPPSPKGSPGTPPPKGAPTPP-------AVTPPSPKGTPTLPATTPSSK 1357
Query: 163 APPPSPPPRSGTAPPA----NRTAPA-TPP 187
P +P + G PPA ++ PA TPP
Sbjct: 1358 GGPTTPSSKEGPTPPAATPSHKGGPAMTPP 1387
Score = 32.3 bits (72), Expect = 0.25
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 117 DPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPP---SPPPRSG 173
+P+ P P G T P G AAT + +P P AP P +PP G
Sbjct: 1288 NPAVVTPPSPKGGPATSPPK--GAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKG 1345
Query: 174 T-----APPANRTAPATPPGR 189
T P+++ P TP +
Sbjct: 1346 TPTLPATTPSSKGGPTTPSSK 1366
Score = 32.0 bits (71), Expect = 0.33
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 118 PSRPPPK-EPTRGSKTP-APARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTA 175
P PPPK PT + TP +P AT ++ P P +P + G A
Sbjct: 1324 PGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPA 1383
Query: 176 --PPANRTAPATP 186
PP+ + PA P
Sbjct: 1384 MTPPSPKRGPAIP 1396
Score = 31.2 bits (69), Expect = 0.56
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 17/84 (20%)
Query: 118 PSRPPPKE----PTRGSKTP---APARLGRAAATAAT----ATTAAAA----PQCGPASA 162
P+ P +E P++G TP P L +A AT+A AT ++ P P S
Sbjct: 1416 PATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSP 1475
Query: 163 APPPSPPPRSGTAPPANRTAPATP 186
PP+P + ++ P + APATP
Sbjct: 1476 KEPPAPKQVATSSSP--KKAPATP 1497
Score = 30.4 bits (67), Expect = 0.95
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 118 PSRPPPK-EPTRGSKTPAPARLGRAAATAATATTAAAA---PQCGPASAAPPPSP----- 168
P+ P PK PT + TP + G T T + P+ GPA+ AP +P
Sbjct: 856 PTPPSPKGAPTPSAVTPLSPK-GVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMT 914
Query: 169 --PPRSGTAPPANRTAPATP 186
P+ A PA + PA+P
Sbjct: 915 SSSPKKARATPAPKGIPASP 934
Score = 30.0 bits (66), Expect = 1.2
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 123 PKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPS---PPPRSGTAPPAN 179
P P TP+ R A AT + P A PP+ P P+ A P
Sbjct: 1510 PSSPKEVPATPSSRR--DPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTP 1567
Query: 180 RTAPATPPGR 189
+ APATP +
Sbjct: 1568 KEAPATPSSK 1577
Score = 28.9 bits (63), Expect = 2.8
Identities = 16/64 (25%), Positives = 22/64 (34%)
Query: 123 PKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANRTA 182
P PT P A AT A P+ P+ + PP PP + + T+
Sbjct: 699 PLVPTASENCPVAPSPQNTCAPLATLVLAPEIPKSVPSPSLPPAGTPPGTKKVDGISHTS 758
Query: 183 PATP 186
P
Sbjct: 759 ALAP 762
Score = 28.9 bits (63), Expect = 2.8
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 16/105 (15%)
Query: 88 DPLAAN-SKTALISHRPPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAA 146
DP A N SK L + P + ++ +T + P +G P ++ A+
Sbjct: 1719 DPSAKNGSKGPLSTVAPAPLLPVQKDSSKTAKGKDASHSP-KGPLAPPESK-------AS 1770
Query: 147 TATTAAA----APQCGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
T TAAA P+ AS + PSPP + P A P PP
Sbjct: 1771 TPLTAAAFEKVLPKPESASVSAAPSPPV---SLPLAPSPVPTLPP 1812
Score = 27.7 bits (60), Expect = 6.1
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 118 PSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPP 177
P P + P P ++ + AA Q GP + PP SP P+
Sbjct: 2 PGEATETVPATEQELPQPQAETAVLPMSSALSVTAALGQPGP-TLPPPCSPAPQQCPLSA 60
Query: 178 ANRTAPATPP 187
AN+ +P P
Sbjct: 61 ANQASPFPSP 70
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 43.9 bits (102), Expect = 8e-05
Identities = 33/122 (27%), Positives = 40/122 (32%), Gaps = 19/122 (15%)
Query: 85 LIADPLAANSKTALISHRPPSTAKLHREEDRTDPSRPPPKEPTR----------GSKTPA 134
L P + K L P + H P PPP + GS P+
Sbjct: 1239 LQGSPTPTSKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPS 1298
Query: 135 PARLGRAAATAATATTAAAAPQCGPASAAPP---------PSPPPRSGTAPPANRTAPAT 185
PA AA A P G + A PP P+ PPR+ A A AP
Sbjct: 1299 PAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAAAAAAAAAAPPA 1358
Query: 186 PP 187
PP
Sbjct: 1359 PP 1360
Score = 34.3 bits (77), Expect = 0.066
Identities = 32/114 (28%), Positives = 38/114 (33%), Gaps = 17/114 (14%)
Query: 89 PLAANSKTALISHR------PPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAA 142
PLA +A + R K E T RP KE G + P P +
Sbjct: 1114 PLAKVEASATLKRRIRAKQNQQENVKFILTESDTVKRRPKAKEREAGPEPPPPLSVYHNG 1173
Query: 143 ATAATATTAAAAPQCGPASAAPPPSP--PPRSGTA-------PPANRTAPATPP 187
T A+ Q GP PPP P PP + A P PA PP
Sbjct: 1174 T--GTVRRRPASEQAGPPELPPPPPPAEPPPTDLAHLPPLPPPEGEARKPAKPP 1225
Score = 30.4 bits (67), Expect = 0.95
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 104 PSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAA 163
PS A + ++PP P+ G+ P G A AAA A+AA
Sbjct: 1297 PSPAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAA--AAAAAAA 1354
Query: 164 PPPSPPPRSGTAP 176
PP+PP G +P
Sbjct: 1355 APPAPP--EGASP 1365
Score = 30.0 bits (66), Expect = 1.2
Identities = 31/118 (26%), Positives = 41/118 (34%), Gaps = 34/118 (28%)
Query: 99 ISHRPPSTAKLHREEDRTDPSRPP---------PKEPTRGSKTPAPARL-----GRAAAT 144
++H PP E + P++PP P +GS TP ++ G
Sbjct: 1205 LAHLPPLPPP---EGEARKPAKPPVSPKPVLTQPVPKLQGSPTPTSKKVPLPGPGSPEVK 1261
Query: 145 AATATTAAAAPQCGPASAAPP--------------PSPPPRSGTAPPANRTAPATPPG 188
A T +P+ P AP PSP P PPA A A PPG
Sbjct: 1262 RAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPA---ALAKPPG 1316
Score = 30.0 bits (66), Expect = 1.2
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 122 PPKEPTRGSKT-PAPARLGRAAATAATATTAAAAPQCGPASAAPPPS 167
P K P+ G+ PA+ RAAA AA AAAAP P A+P S
Sbjct: 1325 PAKPPSPGAPALHVPAKPPRAAAAAA---AAAAAPPAPPEGASPGDS 1368
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 43.1 bits (100), Expect = 1e-04
Identities = 30/71 (42%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 118 PSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAP- 176
P+ PP P + PAPA AA AA A AP PA A P P+P P + AP
Sbjct: 133 PASTPPPVPVL-APAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPA-PAPAPAPVAAPAPA 190
Query: 177 PANRTAPATPP 187
PA APA P
Sbjct: 191 PAPAPAPAPAP 201
Score = 37.4 bits (85), Expect = 0.008
Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 119 SRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASA-------APPPSPPPR 171
S PPP + PAPA + A A AP PA A AP P+P P
Sbjct: 135 STPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPA 194
Query: 172 SGTAP---PANRTAP 183
AP PA AP
Sbjct: 195 PAPAPAPAPAPDAAP 209
Score = 33.1 bits (74), Expect = 0.15
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 133 PAPARLGRAAATAATATTAAAAPQCGPASA-------APPPSPPPRSGTAP-PANRTAPA 184
PAPA A A A AP P +A AP P+P P AP P APA
Sbjct: 131 PAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPA 190
Query: 185 TPP 187
P
Sbjct: 191 PAP 193
Score = 29.6 bits (65), Expect = 1.6
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 134 APARLGRAAATAATATTAAAAPQCGPASA-APPPSPPPRSGTAPPANRTA 182
APA A A A AA AP PA A AP P+P P + A + A
Sbjct: 168 APAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGA 217
Score = 29.6 bits (65), Expect = 1.6
Identities = 17/40 (42%), Positives = 18/40 (45%)
Query: 133 PAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRS 172
PAPA A AA A A AP PA A P + P S
Sbjct: 173 PAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQES 212
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 43.1 bits (100), Expect = 1e-04
Identities = 30/71 (42%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 118 PSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAP- 176
P+ PP P + PAPA AA AA A AP PA A P P+P P + AP
Sbjct: 133 PASTPPPVPVL-APAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPA-PAPAPAPVAAPAPA 190
Query: 177 PANRTAPATPP 187
PA APA P
Sbjct: 191 PAPAPAPAPAP 201
Score = 37.4 bits (85), Expect = 0.008
Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 119 SRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASA-------APPPSPPPR 171
S PPP + PAPA + A A AP PA A AP P+P P
Sbjct: 135 STPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPA 194
Query: 172 SGTAP---PANRTAP 183
AP PA AP
Sbjct: 195 PAPAPAPAPAPDAAP 209
Score = 33.1 bits (74), Expect = 0.15
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 133 PAPARLGRAAATAATATTAAAAPQCGPASA-------APPPSPPPRSGTAP-PANRTAPA 184
PAPA A A A AP P +A AP P+P P AP P APA
Sbjct: 131 PAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPA 190
Query: 185 TPP 187
P
Sbjct: 191 PAP 193
Score = 29.6 bits (65), Expect = 1.6
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 134 APARLGRAAATAATATTAAAAPQCGPASA-APPPSPPPRSGTAPPANRTA 182
APA A A A AA AP PA A AP P+P P + A + A
Sbjct: 168 APAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGA 217
Score = 29.6 bits (65), Expect = 1.6
Identities = 17/40 (42%), Positives = 18/40 (45%)
Query: 133 PAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRS 172
PAPA A AA A A AP PA A P + P S
Sbjct: 173 PAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQES 212
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 43.1 bits (100), Expect = 1e-04
Identities = 30/71 (42%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 118 PSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAP- 176
P+ PP P + PAPA AA AA A AP PA A P P+P P + AP
Sbjct: 144 PASTPPPVPVL-APAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPA-PAPAPAPVAAPAPA 201
Query: 177 PANRTAPATPP 187
PA APA P
Sbjct: 202 PAPAPAPAPAP 212
Score = 37.4 bits (85), Expect = 0.008
Identities = 26/75 (34%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 119 SRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASA-------APPPSPPPR 171
S PPP + PAPA + A A AP PA A AP P+P P
Sbjct: 146 STPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPA 205
Query: 172 SGTAP---PANRTAP 183
AP PA AP
Sbjct: 206 PAPAPAPAPAPDAAP 220
Score = 33.1 bits (74), Expect = 0.15
Identities = 23/63 (36%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 133 PAPARLGRAAATAATATTAAAAPQCGPASA-------APPPSPPPRSGTAP-PANRTAPA 184
PAPA A A A AP P +A AP P+P P AP P APA
Sbjct: 142 PAPASTPPPVPVLAPAPAPAPAPVAAPVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPA 201
Query: 185 TPP 187
P
Sbjct: 202 PAP 204
Score = 29.6 bits (65), Expect = 1.6
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 134 APARLGRAAATAATATTAAAAPQCGPASA-APPPSPPPRSGTAPPANRTA 182
APA A A A AA AP PA A AP P+P P + A + A
Sbjct: 179 APAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQESAEQGA 228
Score = 29.6 bits (65), Expect = 1.6
Identities = 17/40 (42%), Positives = 18/40 (45%)
Query: 133 PAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRS 172
PAPA A AA A A AP PA A P + P S
Sbjct: 184 PAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPDAAPQES 223
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 42.7 bits (99), Expect = 2e-04
Identities = 32/108 (29%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
Query: 94 SKTALISHRPPSTAKLHREEDRTDPSRPP--------PKEPTRGSKTPAPARLGRAAATA 145
S++A S R R R PS PP P P R +TP P R +
Sbjct: 526 SRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPP 585
Query: 146 ATATTAAAAPQCGPASAAPPPSPPPRSGTA----PPANRTAPATPPGR 189
+ + P PSPPP+ TA PP R +P+ PP R
Sbjct: 586 PRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKR 633
Score = 41.6 bits (96), Expect = 4e-04
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 102 RPPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPAS 161
R PS + RT P R PP R S++P R +A+ + ++++++++ S
Sbjct: 313 RRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSS-----RS 367
Query: 162 AAPPPSPPPRSGTAPPANR--TAPATPPGR 189
+PP PP R+ + P R + A+PP R
Sbjct: 368 RSPPKKPPKRTSSPPRKTRRLSPSASPPRR 397
Score = 37.7 bits (86), Expect = 0.006
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Query: 100 SHRPPSTAKLHREEDRTDPSR--PPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQC 157
S PP T + P R P P R + +P P R + + +P
Sbjct: 549 SPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSP 608
Query: 158 GPA--SAAPPPSPPPRSGTAPPANRTAPATPP 187
P +A+PPP P R+ +PP R +PP
Sbjct: 609 PPKRRTASPPPPPKRRASPSPPPKRRVSHSPP 640
Score = 36.6 bits (83), Expect = 0.013
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 121 PPPKE---PTRGSKTPAPARLGRAAATAATATTAAAAPQCGPA-SAAPPPSPPPRSGTAP 176
PPPK+ P ++P+ + R ++ + +T A +PQ S +P P P S + P
Sbjct: 639 PPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPP 698
Query: 177 PANRTAPATPPGR 189
P R A ++P R
Sbjct: 699 PVRRGASSSPQRR 711
Score = 35.4 bits (80), Expect = 0.029
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 100 SHRPPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGP 159
S PP R P + R S+TP P ++ +AA+ + + ++ +
Sbjct: 695 SSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVS 754
Query: 160 ASAAP----PPSPPPRSGTAPPANRTAPATP 186
S P PP+PP + P+ +PA P
Sbjct: 755 GSPEPAAKKPPAPPSPVQSQSPSTNWSPAVP 785
Score = 34.3 bits (77), Expect = 0.066
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 102 RPPSTAKLHREEDRTDPSRPP----PKEPTRGSKTPAPAR----LGRAAATAATATTAAA 153
R PS A R R P+ PP P P R ++P+P R + R + + A
Sbjct: 559 RSPSPAPPPRR--RRTPTPPPRRRTPSPPPR-RRSPSPRRYSPPIQRRYSPSPPPKRRTA 615
Query: 154 APQCGPASAAPPPSPPPR--SGTAPPANRTAPAT 185
+P P A P PP R S + PP R++P T
Sbjct: 616 SPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVT 649
Score = 32.0 bits (71), Expect = 0.33
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 19/100 (19%)
Query: 99 ISHRPPSTAKLHREEDRTDPSR---PPPKEPTRGSKTPAPARLGRAAATAATATTAAAAP 155
+ R S+A L + SR PP K P R S P R + +A+P
Sbjct: 345 VRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTR----------RLSPSASP 394
Query: 156 QCGPASAAPPPSPPPR---SGTAPPANRTAP---ATPPGR 189
+PP +PPP+ S T +NRT + PGR
Sbjct: 395 PRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGR 434
Score = 32.0 bits (71), Expect = 0.33
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 12/77 (15%)
Query: 115 RTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGT 174
R PSR P + K +P GR + + T +P P+PPPR
Sbjct: 522 RHSPSRSASPSPRKRQKETSPR--GRRRRSPSPPPTRRRR--------SPSPAPPPRRRR 571
Query: 175 AP--PANRTAPATPPGR 189
P P R P+ PP R
Sbjct: 572 TPTPPPRRRTPSPPPRR 588
>gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens]
Length = 755
Score = 42.4 bits (98), Expect = 2e-04
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 112 EEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPR 171
+E P PPP E R + P + A +AAAAPQ GP P P+ PP
Sbjct: 64 DEPPLPPPPPPPGELARSPEAVGPELEAEEKLSVRVAESAAAAPQGGP-ELPPSPASPPE 122
Query: 172 SGTAPPANRTAPATPP 187
AP P P
Sbjct: 123 QPPAPEEREEPPLPQP 138
Score = 30.8 bits (68), Expect = 0.73
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 142 AATAATATTAAAAPQCGPASAAPP---PSPPPRSGTAP-PANRTAPATPPG 188
AA AA A AA+P G A A P P P +GT P P T + P G
Sbjct: 2 AAVAAEAAATAASPGEGGAGEAEPEMEPIPGSEAGTDPLPVTATEASVPDG 52
Score = 30.4 bits (67), Expect = 0.95
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 122 PPKEPTRGSKT---PAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPA 178
P EP GS+ P P A+ +APQ PPP PP +P A
Sbjct: 25 PEMEPIPGSEAGTDPLPVTATEASVPDGETDGQQSAPQADEPPLPPPPPPPGELARSPEA 84
>gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens]
Length = 560
Score = 42.4 bits (98), Expect = 2e-04
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 112 EEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPR 171
+E P PPP E R + P + A +AAAAPQ GP P P+ PP
Sbjct: 64 DEPPLPPPPPPPGELARSPEAVGPELEAEEKLSVRVAESAAAAPQGGP-ELPPSPASPPE 122
Query: 172 SGTAPPANRTAPATPP 187
AP P P
Sbjct: 123 QPPAPEEREEPPLPQP 138
Score = 30.8 bits (68), Expect = 0.73
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 142 AATAATATTAAAAPQCGPASAAPP---PSPPPRSGTAP-PANRTAPATPPG 188
AA AA A AA+P G A A P P P +GT P P T + P G
Sbjct: 2 AAVAAEAAATAASPGEGGAGEAEPEMEPIPGSEAGTDPLPVTATEASVPDG 52
Score = 30.4 bits (67), Expect = 0.95
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 122 PPKEPTRGSKT---PAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPA 178
P EP GS+ P P A+ +APQ PPP PP +P A
Sbjct: 25 PEMEPIPGSEAGTDPLPVTATEASVPDGETDGQQSAPQADEPPLPPPPPPPGELARSPEA 84
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 42.0 bits (97), Expect = 3e-04
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 103 PPSTAKLHREEDRTDPSRPPPKEPTRGSKTPA-PARLGRAAATAATATTAAAAPQCGPAS 161
PP A + + P R P P K PA PA +A A A + A+AA P
Sbjct: 433 PPGLAPPQKAPAASAPPRKAPAVPAPSQKAPAVPAPSQKAPAIPAPSRKASAA-SASPRK 491
Query: 162 AAPPPSPPPRSGTAPPANRTAPATP 186
A+ P+PP ++ PP ++ AP+ P
Sbjct: 492 ASAVPAPPQKT---PPPSQKAPSVP 513
Score = 38.5 bits (88), Expect = 0.003
Identities = 28/90 (31%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 103 PPSTAKLHREEDRTDPSRPPPKE-----PTRGSKTPA-PARLGRAAATAATATTAAAAPQ 156
PP A R P+ P P + P K PA PA +A+A +A+ A+A P
Sbjct: 438 PPQKAPAASAPPRKAPAVPAPSQKAPAVPAPSQKAPAIPAPSRKASAASASPRKASAVP- 496
Query: 157 CGPASAAPPPSPPPRSGTAPPANRTAPATP 186
P PPPS S P +P P
Sbjct: 497 -APPQKTPPPSQKAPSVPTIPQKAVSPTAP 525
Score = 30.4 bits (67), Expect = 0.95
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 120 RPPP--KEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPP 177
+PPP P + AP R A + A AP A A P PS + +A P
Sbjct: 431 KPPPGLAPPQKAPAASAPPRKAPAVPAPSQKAPAVPAPS-QKAPAIPAPSRKASAASASP 489
Query: 178 ANRTAPATPP 187
+A PP
Sbjct: 490 RKASAVPAPP 499
>gi|237757312 synaptojanin 1 isoform c [Homo sapiens]
Length = 1295
Score = 42.0 bits (97), Expect = 3e-04
Identities = 34/115 (29%), Positives = 43/115 (37%), Gaps = 18/115 (15%)
Query: 88 DPLAANSKTALISHRPPSTAK----LHREEDRTDPSRPP----------PKEPTRG-SKT 132
D +A + L H PS++ RT P + P P P+R S+T
Sbjct: 1016 DDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRT 1075
Query: 133 PAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
P P A ++ A A PQ PA P PPP APP P PP
Sbjct: 1076 PGPPS---AQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPP 1127
Score = 35.0 bits (79), Expect = 0.038
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 102 RPPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATAT------TAAAAP 155
RPP + P RPPP G+++PAP R A + T + +P
Sbjct: 1107 RPPPPRPVAPPTRPAPPQRPPPPS---GARSPAPTRKEFGAPKSPGTTRKDNIGRSQPSP 1163
Query: 156 QCGPASAAPP------PSPPPRSG--TAPPANRTAPA 184
Q G A P P+ PPR+G +AP ++ A A
Sbjct: 1164 QAGLAGPGPAGYSTARPTIPPRAGVISAPQSHARASA 1200
Score = 32.0 bits (71), Expect = 0.33
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 117 DPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPA-SAAPPPSPPPRSGTA 175
+P +P P + S P RL A A PQ GP + PP PPPRS ++
Sbjct: 1223 EPLKPQAAFPPQSSLPPPAQRLQEPLVPVA-----APMPQSGPQPNLETPPQPPPRSRSS 1277
Query: 176 PPANRTAPATP 186
A + P
Sbjct: 1278 HSLPSEASSQP 1288
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 42.0 bits (97), Expect = 3e-04
Identities = 34/115 (29%), Positives = 43/115 (37%), Gaps = 18/115 (15%)
Query: 88 DPLAANSKTALISHRPPSTAK----LHREEDRTDPSRPP----------PKEPTRG-SKT 132
D +A + L H PS++ RT P + P P P+R S+T
Sbjct: 1055 DDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRT 1114
Query: 133 PAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
P P A ++ A A PQ PA P PPP APP P PP
Sbjct: 1115 PGPPS---AQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPP 1166
Score = 32.0 bits (71), Expect = 0.33
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 117 DPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPA-SAAPPPSPPPRSGTA 175
+P +P P + S P RL A A PQ GP + PP PPPRS ++
Sbjct: 1278 EPLKPQAAFPPQSSLPPPAQRLQEPLVPVA-----APMPQSGPQPNLETPPQPPPRSRSS 1332
Query: 176 PPANRTAPATP 186
A + P
Sbjct: 1333 HSLPSEASSQP 1343
Score = 29.3 bits (64), Expect = 2.1
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 14/97 (14%)
Query: 102 RPPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPAS 161
RPP + P RPPP G+++PAP R A + A P S
Sbjct: 1146 RPPPPRPVAPPTRPAPPQRPPPPS---GARSPAPTRKEFGGIGAPPSPGVARREMEAPKS 1202
Query: 162 AAPP-------PSPPPRSGTAPPA----NRTAPATPP 187
P P++G A P + P PP
Sbjct: 1203 PGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARPTIPP 1239
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 42.0 bits (97), Expect = 3e-04
Identities = 34/115 (29%), Positives = 43/115 (37%), Gaps = 18/115 (15%)
Query: 88 DPLAANSKTALISHRPPSTAK----LHREEDRTDPSRPP----------PKEPTRG-SKT 132
D +A + L H PS++ RT P + P P P+R S+T
Sbjct: 1055 DDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRT 1114
Query: 133 PAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
P P A ++ A A PQ PA P PPP APP P PP
Sbjct: 1115 PGPPS---AQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPP 1166
Score = 32.0 bits (71), Expect = 0.33
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 117 DPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPA-SAAPPPSPPPRSGTA 175
+P +P P + S P RL A A PQ GP + PP PPPRS ++
Sbjct: 1278 EPLKPQAAFPPQSSLPPPAQRLQEPLVPVA-----APMPQSGPQPNLETPPQPPPRSRSS 1332
Query: 176 PPANRTAPATP 186
A + P
Sbjct: 1333 HSLPSEASSQP 1343
Score = 29.3 bits (64), Expect = 2.1
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 14/97 (14%)
Query: 102 RPPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPAS 161
RPP + P RPPP G+++PAP R A + A P S
Sbjct: 1146 RPPPPRPVAPPTRPAPPQRPPPPS---GARSPAPTRKEFGGIGAPPSPGVARREMEAPKS 1202
Query: 162 AAPP-------PSPPPRSGTAPPA----NRTAPATPP 187
P P++G A P + P PP
Sbjct: 1203 PGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARPTIPP 1239
>gi|237757326 synaptojanin 1 isoform d [Homo sapiens]
Length = 1526
Score = 42.0 bits (97), Expect = 3e-04
Identities = 34/115 (29%), Positives = 43/115 (37%), Gaps = 18/115 (15%)
Query: 88 DPLAANSKTALISHRPPSTAK----LHREEDRTDPSRPP----------PKEPTRG-SKT 132
D +A + L H PS++ RT P + P P P+R S+T
Sbjct: 1011 DDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSPCQSPTISEGPVPSLPIRPSRAPSRT 1070
Query: 133 PAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
P P A ++ A A PQ PA P PPP APP P PP
Sbjct: 1071 PGPPS---AQSSPIDAQPATPLPQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPP 1122
Score = 34.3 bits (77), Expect = 0.066
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 117 DPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPAS-AAPPPSPPPRSG-- 173
+P RPPP P PAP + + + + A GPA + P+ PPR+G
Sbjct: 1099 EPKRPPPPRPVAPPTRPAPPQRPPPPSGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVI 1158
Query: 174 TAPPANRTAPA 184
+AP ++ A A
Sbjct: 1159 SAPQSHARASA 1169
Score = 32.0 bits (71), Expect = 0.33
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 117 DPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPA-SAAPPPSPPPRSGTA 175
+P +P P + S P RL A A PQ GP + PP PPPRS ++
Sbjct: 1192 EPLKPQAAFPPQSSLPPPAQRLQEPLVPVA-----APMPQSGPQPNLETPPQPPPRSRSS 1246
Query: 176 PPANRTAPATP 186
A + P
Sbjct: 1247 HSLPSEASSQP 1257
Score = 30.0 bits (66), Expect = 1.2
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 102 RPPSTAKLHREEDRTDPSRPPPKE------PTRGSKTPAPARLGRAAATAATATTAAAAP 155
RPP + P RPPP P G P PA A T +AP
Sbjct: 1102 RPPPPRPVAPPTRPAPPQRPPPPSGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVISAP 1161
Query: 156 QCGPASAAPPPSPPPRSGTA 175
Q ++A +P +S T+
Sbjct: 1162 QSHARASAGRLTPESQSKTS 1181
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 42.0 bits (97), Expect = 3e-04
Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 19/106 (17%)
Query: 85 LIADPLAANSKTALISHRPPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAAT 144
L A PL+A + A I+ P+ P P G+ TP
Sbjct: 261 LAALPLSAGAPAAAIAGSGPAAPAAFE-------GAQPLSRPESGASTPG---------- 303
Query: 145 AATATTAAAAPQCGPASAAPPPSPPPRSGTA--PPANRTAPATPPG 188
+A AAP PA AAP P+P P+S + P + T PA PG
Sbjct: 304 GPAEPSAPAAPSAAPAPAAPAPAPAPQSAASSQPQSASTPPALAPG 349
Score = 34.3 bits (77), Expect = 0.066
Identities = 28/80 (35%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 120 RPPPKE---PTRGSKTPAPARL---GRAAATAATATTAAAAPQCGPAS-----AAPPPSP 168
RPPP+ P P PA G AA + AAA GPA+ A P S
Sbjct: 235 RPPPRPSLSPAAAPSAPGPAPSQLPGLAALPLSAGAPAAAIAGSGPAAPAAFEGAQPLSR 294
Query: 169 PPRSGTAP--PANRTAPATP 186
P + P PA +APA P
Sbjct: 295 PESGASTPGGPAEPSAPAAP 314
Score = 27.3 bits (59), Expect = 8.0
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 113 EDRTDPSRPPPKEPTRGSKTPAPARLGRAAAT--AATATTAAAAPQCGPASAAPPPSPPP 170
ED +PS P P+ +++ A G A A A PA P PPP
Sbjct: 92 EDFPEPS--PASSPSERAESEAAEEAGAEGAEGEARPVEKEAEPMDAEPAGDTRAPRPPP 149
Query: 171 RSGTAPPANRTAPAT 185
+ P AP+T
Sbjct: 150 AAPAPPTPAYGAPST 164
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 42.0 bits (97), Expect = 3e-04
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 119 SRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPAS--AAPPPSPPPRSGTAP 176
S P P + +G+ P P + ++AT +T A PA A PP PPP AP
Sbjct: 586 SHPSPSQGPQGAPYPFPP-VPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAP 644
Query: 177 PANRTAPATPPG 188
ATPPG
Sbjct: 645 SPGAYKTATPPG 656
Score = 28.1 bits (61), Expect = 4.7
Identities = 23/92 (25%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
Query: 98 LISHRPPSTAKLHREED---RTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAA 154
L R K+ RE + R + R +E + + L R+ A
Sbjct: 792 LAKKRADLVEKVRREAEQRAREEKEREREREREKEREREKERELERSVKLAQEGRAPVEC 851
Query: 155 PQCGPASAAPPPSPPPRSGTAPPANRTAPATP 186
P GP PP P T PP P TP
Sbjct: 852 PSLGPVPHRPPFEPGSAVATVPP--YLGPDTP 881
Score = 27.7 bits (60), Expect = 6.1
Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Query: 118 PSRPPPK----------EPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPS 167
P+ PPP P P P L A P+ GP A P S
Sbjct: 299 PNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHS 358
Query: 168 PPPRSGTAP 176
PP S +AP
Sbjct: 359 LPPASSSAP 367
Score = 27.3 bits (59), Expect = 8.0
Identities = 30/114 (26%), Positives = 39/114 (34%), Gaps = 18/114 (15%)
Query: 89 PLAANSKTALISHRPPSTAKLHREEDRTDPSRPPPKE-PTRGSKTPAPARLGRAAATAAT 147
P++ +S A S PP+ PS PPP P P P L +A+
Sbjct: 259 PISVSSSGA--SGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASAS 316
Query: 148 ATTAAAAP---------QCGPASAAPPPSPP------PRSGTAPPANRTAPATP 186
A P G PP P P + PPA+ +APA P
Sbjct: 317 PPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPPASSSAPAPP 370
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 42.0 bits (97), Expect = 3e-04
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 119 SRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPAS--AAPPPSPPPRSGTAP 176
S P P + +G+ P P + ++AT +T A PA A PP PPP AP
Sbjct: 586 SHPSPSQGPQGAPYPFPP-VPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAP 644
Query: 177 PANRTAPATPPG 188
ATPPG
Sbjct: 645 SPGAYKTATPPG 656
Score = 28.1 bits (61), Expect = 4.7
Identities = 23/92 (25%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
Query: 98 LISHRPPSTAKLHREED---RTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAA 154
L R K+ RE + R + R +E + + L R+ A
Sbjct: 792 LAKKRADLVEKVRREAEQRAREEKEREREREREKEREREKERELERSVKLAQEGRAPVEC 851
Query: 155 PQCGPASAAPPPSPPPRSGTAPPANRTAPATP 186
P GP PP P T PP P TP
Sbjct: 852 PSLGPVPHRPPFEPGSAVATVPP--YLGPDTP 881
Score = 27.7 bits (60), Expect = 6.1
Identities = 20/69 (28%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Query: 118 PSRPPPK----------EPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPS 167
P+ PPP P P P L A P+ GP A P S
Sbjct: 299 PNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHS 358
Query: 168 PPPRSGTAP 176
PP S +AP
Sbjct: 359 LPPASSSAP 367
Score = 27.3 bits (59), Expect = 8.0
Identities = 30/114 (26%), Positives = 39/114 (34%), Gaps = 18/114 (15%)
Query: 89 PLAANSKTALISHRPPSTAKLHREEDRTDPSRPPPKE-PTRGSKTPAPARLGRAAATAAT 147
P++ +S A S PP+ PS PPP P P P L +A+
Sbjct: 259 PISVSSSGA--SGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASAS 316
Query: 148 ATTAAAAP---------QCGPASAAPPPSPP------PRSGTAPPANRTAPATP 186
A P G PP P P + PPA+ +APA P
Sbjct: 317 PPGLGAQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHSLPPASSSAPAPP 370
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 42.0 bits (97), Expect = 3e-04
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 121 PPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPAS------AAPPPSPPPRSGT 174
P + P + P P G AAA A T + A P+S AAPP PPP SG
Sbjct: 1524 PTEQPPGAEAPLPVPPPTGTAAAPAPTPSPAGGPDPTSPSSDSGTAQAAPPLPPPPESGP 1583
Query: 175 APPANRTAPATPP 187
P AP P
Sbjct: 1584 GQPGWEGAPQPSP 1596
Score = 32.3 bits (72), Expect = 0.25
Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 13/81 (16%)
Query: 120 RPPPKEPTRGSKTPAPARLGRAAATAATATTAA-------------AAPQCGPASAAPPP 166
RP PK P + A +G A A+ A AP+ PP
Sbjct: 1171 RPSPKAPQKVKAAIASIPVGSFEAGASGRPGPAPRQPLEPGPVREPTAPESELEGQPTPP 1230
Query: 167 SPPPRSGTAPPANRTAPATPP 187
+PPP T P R++P PP
Sbjct: 1231 APPPLPETWTPTARSSPPLPP 1251
Score = 30.8 bits (68), Expect = 0.73
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 119 SRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQC--GPASAAPPPSPPPRSGT-- 174
S P + AP L AT+ T A P+ PA+A P P+ P S T
Sbjct: 1099 SPAPTSSAPLAQPSQAPPSLVYTVATSTTPPAATILPKGPPAPATATPAPTSPFPSATAG 1158
Query: 175 -------APPANRTAPATP 186
AP A R +P P
Sbjct: 1159 SMTYSLVAPKAQRPSPKAP 1177
Score = 30.0 bits (66), Expect = 1.2
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 13/86 (15%)
Query: 103 PPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASA 162
PP + R+ P PPP E +K P A+ ++++ P G +
Sbjct: 1232 PPPLPETWTPTARSSPPLPPPAEERTSAKGPE-----TMASKFPSSSSDWRVPGQGLENR 1286
Query: 163 APPPSPPPRSGTAPPANRTAPATPPG 188
PP+PP AP APA PG
Sbjct: 1287 GEPPTPP---SPAP-----APAVAPG 1304
Score = 30.0 bits (66), Expect = 1.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 151 AAAAPQCGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
AA + P + AP P PPP A PA +PA P
Sbjct: 1521 AATPTEQPPGAEAPLPVPPPTGTAAAPAPTPSPAGGP 1557
Score = 29.3 bits (64), Expect = 2.1
Identities = 26/106 (24%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 102 RPPSTAKLHREEDRTDPSRPPPKE---PTRGSKTPAPARLGRAAATAATATTAAAAPQCG 158
R P+ + E T P+ PP E PT S P P + T A+ P
Sbjct: 1214 REPTAPESELEGQPTPPAPPPLPETWTPTARSSPPLPPPAEERTSAKGPETMASKFPSSS 1273
Query: 159 ------------------PASAAPPPSPPPRSGTAPPANRTAPATP 186
P S AP P+ P + + R A TP
Sbjct: 1274 SDWRVPGQGLENRGEPPTPPSPAPAPAVAPGGSSESSSGRAAGDTP 1319
Score = 28.5 bits (62), Expect = 3.6
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 130 SKTPAPARLGRAAATAATATTAAAAPQCGPASAAP---PPSPPP------RSGTAPPANR 180
S P+P AA TA + P S+AP P PP + T PPA
Sbjct: 1073 SPVPSPQLPPACAAPGGPVITAFYSGSPAPTSSAPLAQPSQAPPSLVYTVATSTTPPAAT 1132
Query: 181 TAPATPP 187
P PP
Sbjct: 1133 ILPKGPP 1139
Score = 28.1 bits (61), Expect = 4.7
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 122 PPKEPTRGSKT-----PAPARLGRAAATAATATT----AAAAPQCG-PASAAPPPSPPPR 171
P P G+K PAP R T+T AA AP G P + P +PPP+
Sbjct: 840 PAPAPAPGTKAAAPSGPAPTTSIRFTLPPGTSTNGKVLAATAPTPGIPILQSVPSAPPPK 899
Query: 172 SGT-----APPANRTAPATP 186
+ + APP +A P
Sbjct: 900 AQSVSPVQAPPPGGSAQLLP 919
Score = 27.7 bits (60), Expect = 6.1
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 117 DPSRP-PPKEPTRGSKTPAPARLGRAAATAATATTAAA----------APQCGPASAAPP 165
DP P PP P K A A++ A+++ +AA A + G S A P
Sbjct: 511 DPEPPGPPDPPVAFGKGYGSAPSSSASSPASSSASAATSFSLGSGTFKAQESGQGSTAGP 570
Query: 166 PSPPPRSGTAPPA 178
PPP G PA
Sbjct: 571 LRPPP-PGAGGPA 582
>gi|148727370 immediate early response 5-like [Homo sapiens]
Length = 404
Score = 42.0 bits (97), Expect = 3e-04
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 118 PSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPP 177
P R P EP + P PA L A A P+ A +APP + PP + +PP
Sbjct: 169 PHRGQPLEPLQ----PGPAPLPLPLPPPAPAALCPRDPRAPAACSAPPGAAPPAAAASPP 224
Query: 178 ANRTAPATPPG 188
A+ APA+ PG
Sbjct: 225 AS-PAPASSPG 234
Score = 27.7 bits (60), Expect = 6.1
Identities = 18/55 (32%), Positives = 21/55 (38%)
Query: 133 PAPARLGRAAATAATATTAAAAPQCGPASAAPPPSPPPRSGTAPPANRTAPATPP 187
PAP AAA A A A A + +A PP P G + PA P
Sbjct: 132 PAPRGCAAAAAAGAPAGGAGALSELPGCAALQPPHGAPHRGQPLEPLQPGPAPLP 186
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,468,856
Number of Sequences: 37866
Number of extensions: 558750
Number of successful extensions: 22861
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 1195
Number of HSP's that attempted gapping in prelim test: 9687
Number of HSP's gapped (non-prelim): 9432
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.