Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RPS16 Sequence: fasta or formatted (146aa) NCBI GI: 4506691
Description:

ribosomal protein S16

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         12           1
 C cysteine            1.4          2           1
 D aspartate           3.4          5           1
 E glutamate           4.8          7           1
 F phenylalanine       2.1          3           1
 G glycine             8.9         13           3
 H histidine           1.4          2           1
 I isoleucine          6.2          9           1
 K lysine             11.0         16           2
 L leucine             8.9         13           3
 M methionine          1.4          2           1
 N asparagine          1.4          2           1
 P proline             4.8          7           1
 Q glutamine           5.5          8           1
 R arginine            9.6         14           2
 S serine              4.8          7           1
 T threonine           2.7          4           1
 V valine              8.2         12           1
 W tryptophan          0.0          0           0
 Y tyrosine            5.5          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal protein S16 
LOC100129203          0.263   PREDICTED: similar to mCG50504 
MRPS9                 0.102   mitochondrial ribosomal protein S9 
NCKAP1L               0.026   NCK-associated protein 1-like 
SYCP2                 0.019   synaptonemal complex protein 2 
LOC100293337          0.008   PREDICTED: hypothetical protein 
LOC100290919          0.008   PREDICTED: hypothetical protein XP_002347810 
LOC100288369          0.008   PREDICTED: hypothetical protein XP_002343563 
C10orf76              0.008   hypothetical protein LOC79591 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press