Guide to the Human Genome
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Name: LOC100131102 Sequence: fasta or formatted (285aa) NCBI GI: 239743620
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {195aa} PREDICTED: hypothetical protein
alt prot {159aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.1         43           3
 C cysteine            1.1          3           1
 D aspartate           1.8          5           1
 E glutamate           3.2          9           1
 F phenylalanine       2.1          6           1
 G glycine            12.6         36           5
 H histidine           1.1          3           1
 I isoleucine          2.5          7           2
 K lysine              1.1          3           1
 L leucine             9.1         26           4
 M methionine          1.8          5           1
 N asparagine          2.5          7           1
 P proline            16.1         46           3
 Q glutamine           3.9         11           1
 R arginine           10.9         31           3
 S serine              6.0         17           2
 T threonine           3.2          9           2
 V valine              5.3         15           2
 W tryptophan          0.7          2           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131102          0.631   PREDICTED: hypothetical protein 
LOC100131102          0.444   PREDICTED: hypothetical protein 
SAMD1                 0.074   sterile alpha motif domain containing 1 
NACA                  0.074   nascent polypeptide-associated complex alpha subuni...
WBP11                 0.067   WW domain binding protein 11 
CPSF6                 0.063   cleavage and polyadenylation specific factor 6, 68 ...
MEX3D                 0.059   ring finger and KH domain containing 1 
WAS                   0.058   Wiskott-Aldrich syndrome protein 
LOC100292723          0.058   PREDICTED: hypothetical protein 
DIAPH1                0.058   diaphanous 1 isoform 2 
DIAPH1                0.058   diaphanous 1 isoform 1 
FMNL1                 0.058   formin-like 1 
ENAH                  0.058   enabled homolog isoform a 
ENAH                  0.058   enabled homolog isoform b 
COL22A1               0.058   collagen, type XXII, alpha 1 
TBKBP1                0.056   TBK1 binding protein 1 
FLJ22184              0.054   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.054   PREDICTED: hypothetical protein LOC80164 
TAF4                  0.054   TBP-associated factor 4 
PDCD7                 0.052   programmed cell death 7 
GGN                   0.052   gametogenetin 
LMTK3                 0.052   lemur tyrosine kinase 3 
OGFR                  0.052   opioid growth factor receptor 
WASF2                 0.052   WAS protein family, member 2 
ATN1                  0.052   atrophin-1 
ATN1                  0.052   atrophin-1 
FMN1                  0.050   formin 1 
FMN2                  0.050   formin 2 
PRR12                 0.050   proline rich 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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