Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100129103 Sequence: fasta or formatted (915aa) NCBI GI: 169201839
Description:

PREDICTED: similar to hCG2038970

Not currently referenced in the text

Other entries for this name:
alt prot {821aa} PREDICTED: similar to hCG2038970
alt prot {904aa} PREDICTED: similar to hCG2038970
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         88           4
 C cysteine            3.4         31           1
 D aspartate           2.1         19           1
 E glutamate           3.9         36           2
 F phenylalanine       2.7         25           1
 G glycine             9.9         91           3
 H histidine           2.8         26           1
 I isoleucine          1.9         17           1
 K lysine              3.4         31           2
 L leucine            10.1         92           3
 M methionine          1.4         13           1
 N asparagine          1.6         15           1
 P proline            10.1         92           3
 Q glutamine           5.9         54           2
 R arginine            7.9         72           2
 S serine              9.3         85           2
 T threonine           5.5         50           2
 V valine              5.7         52           2
 W tryptophan          2.1         19           2
 Y tyrosine            0.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2038970 
LOC100129103          0.827   PREDICTED: similar to hCG2038970 
LOC100129103          0.668   PREDICTED: similar to hCG2038970 
CXorf67               0.006   hypothetical protein LOC340602 
SRRM2                 0.006   splicing coactivator subunit SRm300 
MUC17                 0.006   mucin 17 
LOC100291991          0.006   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC100290472          0.006   PREDICTED: hypothetical protein XP_002346905 
LOC100287825          0.006   PREDICTED: similar to golgi autoantigen, golgin sub...
WDR33                 0.006   WD repeat domain 33 isoform 1 
RERE                  0.005   atrophin-1 like protein isoform b 
RERE                  0.005   atrophin-1 like protein isoform a 
RERE                  0.005   atrophin-1 like protein isoform a 
RADIL                 0.005   Rap GTPase interactor 
CHRD                  0.005   chordin 
LOC100293375          0.005   PREDICTED: hypothetical protein 
LOC100130311          0.005   hypothetical protein LOC100130311 
LOC100287825          0.005   PREDICTED: hypothetical protein XP_002342738 
C10orf91              0.005   hypothetical protein LOC170393 
MUC12                 0.004   PREDICTED: mucin 12 
LOC100132249          0.004   PREDICTED: hypothetical protein 
KIAA1602              0.004   hypothetical protein LOC57701 
GRRP1                 0.004   glycine/arginine rich protein 1 
C17orf63              0.004   hypothetical protein LOC55731 
C17orf63              0.004   hypothetical protein LOC55731 
GRID2IP               0.004   glutamate receptor, ionotropic, delta 2 (Grid2) int...
OBSCN                 0.004   obscurin, cytoskeletal calmodulin and titin-interac...
BSN                   0.004   bassoon protein 
ETV3                  0.004   ets variant gene 3 isoform 1 
LOC730130             0.004   hypothetical protein LOC730130 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press